View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20574_high_2 (Length: 512)
Name: NF20574_high_2
Description: NF20574
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20574_high_2 |
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Alignment Details
Target: chr4 (Bit Score: 280; Significance: 1e-156; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 280; E-Value: 1e-156
Query Start/End: Original strand, 11 - 426
Target Start/End: Original strand, 30506182 - 30506595
Alignment:
| Q |
11 |
cataggtctagcaatgctcaagtaatttcacattttcaaggtgctcctttcaatccttgattcaagtggtggacaagctatatagaggattaaatcgaag |
110 |
Q |
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| T |
30506182 |
cataggtctagcaatgctcaagtaatttcacattttcaaggtgctccttttaacccttgattcaagtggtggacaagctata--gagga----------g |
30506269 |
T |
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| Q |
111 |
gatatataattattaagaggccccgaattgaaaaggatacgaacaaattatatattaatactgagccagcattaca---atatatattgcaaaaataatc |
207 |
Q |
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| T |
30506270 |
gatatataattattaagaggccaagaattgaaaaggttatgaacaaagtatatattaatactgaggcagcattacatatatatatattgcaaaaataatc |
30506369 |
T |
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| Q |
208 |
aaaataagttaataacctatatactctagttaggagggaaaatggttggcaagtaagagagattttgttgaagaccgaagtgagaggaacacttttattt |
307 |
Q |
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| T |
30506370 |
aaaataagttaataacctatatactctagttaggagggaaaatggttggcaagtaagagagattttgttgaagactgaagtgagaggaacacttttattt |
30506469 |
T |
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| Q |
308 |
gtaacattattcccatctaagatact-------gatcaaaggcatcatatttgtgcccatgcatggtaaagactaacatattaaatagtcaaaaacataa |
400 |
Q |
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| T |
30506470 |
gtaacattattcccatctaaaatactttagtagtgtcaaaggcatcatatttgtgcccatgcttggtaaagactaacatattaaatagtcaaaaacataa |
30506569 |
T |
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| Q |
401 |
ttttaccttaaacaatcttgaactac |
426 |
Q |
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| T |
30506570 |
gtttaccataaacaatcttgaactac |
30506595 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 348 - 435
Target Start/End: Original strand, 30513286 - 30513373
Alignment:
| Q |
348 |
tatttgtgcccatgcatggtaaagactaacatattaaatagtcaaaaacataatttt-accttaaacaatcttgaactactgaattcac |
435 |
Q |
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| T |
30513286 |
tatttgtccccatgcttggtaaagactgacatat-aaatagtagaaagcatgatttttacctcaagcaatcttgaactactgaattcac |
30513373 |
T |
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