View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20574_high_9 (Length: 357)
Name: NF20574_high_9
Description: NF20574
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20574_high_9 |
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Alignment Details
Target: chr2 (Bit Score: 320; Significance: 1e-180; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 1 - 340
Target Start/End: Original strand, 27474847 - 27475186
Alignment:
| Q |
1 |
tatttttgaaagattctctggaagaaccataattttgtttccctgtcatagtcctttatgggtaaaggaggtctaacttgatgtattttaaatgaattct |
100 |
Q |
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| T |
27474847 |
tatttttgaaagattctttggaagaaccataatttggtttccctgtcatagtcctttatgggtaaaggaggtctaacttgatgtattttaaatgaattct |
27474946 |
T |
|
| Q |
101 |
actttataaatttaggtgattaaagaatggaagaaactagagttagttgattatagatttctaagtggatagagttcactgtaatgaaacaaaaactaaa |
200 |
Q |
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| T |
27474947 |
actttataaatttaggtgattaaagaatggaagaaattagagttagttgattatagatttctaagtggatagagttcactgtaatgaaacaaaaactaaa |
27475046 |
T |
|
| Q |
201 |
tatgtttcaagtttattttgtcacactttcttaagagacaaactagagttcaactatatgtatgaaggggcatactaaaattgtaataagatgcaatatt |
300 |
Q |
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| T |
27475047 |
tatgtttcaagtctattttgtcacactttcttaagagacaaacaagagttcaactatatgtatgaaggggcatactaaaattgtaataagatgcaatatt |
27475146 |
T |
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| Q |
301 |
tcgaggaacttagtttatttggtcccttttatgatggttt |
340 |
Q |
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| T |
27475147 |
tcgaggaacttagtttatttggtcccttttatgatggttt |
27475186 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 48 - 296
Target Start/End: Original strand, 26058062 - 26058314
Alignment:
| Q |
48 |
atagtcctttatgggtaaaggaggtctaacttgatgtattttaaatgaatt---ctactttataaatttaggtgattaaagaatggaagaaactagagtt |
144 |
Q |
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| T |
26058062 |
ataggcctgtatggataaaggaggtctaacttaatgtgttttaaataaacttaacaacattatacttttgggtgattaatgtagggaagaaactagaatt |
26058161 |
T |
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| Q |
145 |
ag-ttgattatagatttctaagtggatagagttcactgtaatgaaacaaaaactaaatatgtttcaagtttattttgtcacactttcttaagagacaaac |
243 |
Q |
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| T |
26058162 |
gggttaattatagattttaaagtggataaagttcactataatgaaacaaaaactaattgtgtttcaagtctcttttgctgcaatttcttaagggacagac |
26058261 |
T |
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| Q |
244 |
tagagttcaactatatgtatgaaggggcatactaaaattgtaataagatgcaa |
296 |
Q |
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||||||||| ||||||| | | |||| ||| |||||||||||||||||| |
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| T |
26058262 |
aagagttcaagactatgtataaggtggcaaactggaattgtaataagatgcaa |
26058314 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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