View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20574_low_11 (Length: 299)
Name: NF20574_low_11
Description: NF20574
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20574_low_11 |
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Alignment Details
Target: chr7 (Bit Score: 240; Significance: 1e-133; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 12 - 280
Target Start/End: Complemental strand, 37417633 - 37417369
Alignment:
| Q |
12 |
atgaatggagatgtaagtgcatttgattttaagcttcacatagttttctatattatgtccacagattagtcttaagtgtttgttaggaaccaaagaattg |
111 |
Q |
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| T |
37417633 |
atgaatggagatgtaagtgcatttgattttaagcttcacatagttttctatattatgtccacatattagtcttaagtgtttgttaggaaccaaagaattg |
37417534 |
T |
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| Q |
112 |
aatggaaaagaataaacaattttattgaaagattgcgaacagacaaaagagaataggagagaaatctaattaagggtttcctcttcacagttttagaatg |
211 |
Q |
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| T |
37417533 |
aatggaaaagaataaacaattttattgaaagattgcgaacggacaaaagagaataggagagaaatc----aaagggtttcctcttcacagttttagaatg |
37417438 |
T |
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| Q |
212 |
ttttctcatactccaccccgtcaattgaacttggactccttctatggtcttgagttagatgcagttcgt |
280 |
Q |
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| T |
37417437 |
ttttctcatactccaccccgtcaattgaacttggactccttctatggtcttgagttagatgcagttcgt |
37417369 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 12 - 280
Target Start/End: Complemental strand, 37425165 - 37424901
Alignment:
| Q |
12 |
atgaatggagatgtaagtgcatttgattttaagcttcacatagttttctatattatgtccacagattagtcttaagtgtttgttaggaaccaaagaattg |
111 |
Q |
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| T |
37425165 |
atgaatggagatgtaagtgcatttgattttaagcttcacatagttttctatattatgtccacatattagtcttaagtgtttgttaggaaccaaagaattg |
37425066 |
T |
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| Q |
112 |
aatggaaaagaataaacaattttattgaaagattgcgaacagacaaaagagaataggagagaaatctaattaagggtttcctcttcacagttttagaatg |
211 |
Q |
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| T |
37425065 |
aatggaaaagaataaacaattttattgaaagattgagaacggacaaaagagaataggagagaaatc----aaagggtttcctcttcacagttttagaatg |
37424970 |
T |
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| Q |
212 |
ttttctcatactccaccccgtcaattgaacttggactccttctatggtcttgagttagatgcagttcgt |
280 |
Q |
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| T |
37424969 |
ttttctcaaactccacccagtcaattgaacttggactccttctatggtcttgagttagatgcagttcgt |
37424901 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 91 - 178
Target Start/End: Complemental strand, 34317906 - 34317819
Alignment:
| Q |
91 |
ttgttaggaaccaaagaattgaatggaaaagaataaacaattttattgaaagattgcgaacagacaaaagagaataggagagaaatct |
178 |
Q |
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| T |
34317906 |
ttgttaggaacctaagaattgaattgaaaataatgaactattttattgaaagattgagaaaggataaaggagaataggagagaaatct |
34317819 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 92 - 143
Target Start/End: Complemental strand, 43672464 - 43672413
Alignment:
| Q |
92 |
tgttaggaaccaaagaattgaatggaaaagaataaacaattttattgaaaga |
143 |
Q |
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| T |
43672464 |
tgttaggaacccaagaattgaatggaaaagaatggacaattttattgaaaga |
43672413 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 91 - 173
Target Start/End: Complemental strand, 10057440 - 10057358
Alignment:
| Q |
91 |
ttgttaggaaccaaagaattgaatggaaaagaataaacaattttattgaaagattgcgaacagacaaaagagaataggagaga |
173 |
Q |
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| T |
10057440 |
ttgttaggaaccaaaaaattgatatgaaaggaacgaacaattttattgaaagattgagaaaggacaaacgagaataggagaga |
10057358 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 94 - 178
Target Start/End: Complemental strand, 7872146 - 7872062
Alignment:
| Q |
94 |
ttaggaaccaaagaattgaatggaaaagaataaacaattttattgaaagattgcgaacagacaaaagagaataggagagaaatct |
178 |
Q |
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||||||||| ||| ||||||| ||||||||| |||||||||||||||| |||| || || ||| ||||||| ||||||||||| |
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| T |
7872146 |
ttaggaacccaagtattgaattgaaaagaatgaacaattttattgaaatattgataaaggataaatgagaatatgagagaaatct |
7872062 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.000000007; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 94 - 141
Target Start/End: Original strand, 52127667 - 52127714
Alignment:
| Q |
94 |
ttaggaaccaaagaattgaatggaaaagaataaacaattttattgaaa |
141 |
Q |
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||||||||| || |||||||| ||||||||| |||||||||||||||| |
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| T |
52127667 |
ttaggaacccaataattgaattgaaaagaatcaacaattttattgaaa |
52127714 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 90 - 171
Target Start/End: Complemental strand, 50891122 - 50891041
Alignment:
| Q |
90 |
tttgttaggaaccaaagaattgaatggaaaagaataaacaattttattgaaagattgcgaacagacaaaagagaataggaga |
171 |
Q |
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| T |
50891122 |
tttgttaggaacccaagagttaaattgaaaaaaatgagcaattttattgaaagattgagaaaggataaaggagaatgggaga |
50891041 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 84 - 129
Target Start/End: Complemental strand, 53504789 - 53504744
Alignment:
| Q |
84 |
taagtgtttgttaggaaccaaagaattgaatggaaaagaataaaca |
129 |
Q |
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|||| ||||||||||||||||| |||||||||||| |||| ||||| |
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| T |
53504789 |
taagcgtttgttaggaaccaaataattgaatggaatagaaaaaaca |
53504744 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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