View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20574_low_12 (Length: 263)
Name: NF20574_low_12
Description: NF20574
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20574_low_12 |
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Alignment Details
Target: chr3 (Bit Score: 226; Significance: 1e-124; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 16 - 245
Target Start/End: Original strand, 52385925 - 52386154
Alignment:
| Q |
16 |
agatgaagcgggaaaggcatatgtgaacagcaacatacagagtatgaataattcattgatggtgcaaggttcaataaatggaagagaccccggcgttcat |
115 |
Q |
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| T |
52385925 |
agatgaagcgggaaaggcatatgtgaacagcaacatacagagtatgaataattcattgatggtgcaaggttcaataaatggaagagaccccggcgttcat |
52386024 |
T |
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| Q |
116 |
gtcattcttcccgaaaagcctgagcctcaagttaaacaaggtttggaaaaccgcaaagctgaagttaaaacagttagccgggtagagaggttaacttacc |
215 |
Q |
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| T |
52386025 |
gtcattcttcccgaaaagcctgagcctcaagttaaacaaggtttggaaaaccgcgaagctgaagttaaaacagttagccgggtagagaggttaacttacc |
52386124 |
T |
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| Q |
216 |
aaccaatggttcgaagacgatgcctgagag |
245 |
Q |
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| T |
52386125 |
aaccaatggttcgaagacgatgcctgagag |
52386154 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 32 - 114
Target Start/End: Original strand, 7087813 - 7087895
Alignment:
| Q |
32 |
gcatatgtgaacagcaacatacagagtatgaataattcattgatggtgcaaggttcaataaatggaagagaccccggcgttca |
114 |
Q |
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| T |
7087813 |
gcatatgttaacagcaacatacaaagtatcaataattcactcatgtttcatggttcaatcaatgaaagagaccctggagttca |
7087895 |
T |
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