View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20574_low_14 (Length: 253)

Name: NF20574_low_14
Description: NF20574
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20574_low_14
NF20574_low_14
[»] chr4 (16 HSPs)
chr4 (15-197)||(47606411-47606596)
chr4 (89-175)||(29833514-29833601)
chr4 (121-171)||(1273353-1273403)
chr4 (97-198)||(4373495-4373599)
chr4 (12-171)||(15446479-15446636)
chr4 (121-174)||(37559141-37559194)
chr4 (13-166)||(23153062-23153226)
chr4 (89-175)||(29834319-29834406)
chr4 (127-189)||(53757908-53757971)
chr4 (121-171)||(5688557-5688607)
chr4 (121-171)||(26788668-26788718)
chr4 (121-171)||(33377284-33377334)
chr4 (121-171)||(55953772-55953822)
chr4 (121-189)||(53757503-53757571)
chr4 (121-156)||(44128254-44128289)
chr4 (123-171)||(3217532-3217580)
[»] scaffold0012 (2 HSPs)
scaffold0012 (15-197)||(243399-243584)
scaffold0012 (12-197)||(242564-242752)
[»] chr1 (14 HSPs)
chr1 (12-197)||(6709789-6709977)
chr1 (15-178)||(6710636-6710801)
chr1 (121-170)||(25786115-25786164)
chr1 (89-171)||(2971846-2971929)
chr1 (89-175)||(25889379-25889466)
chr1 (89-161)||(14391163-14391236)
chr1 (121-174)||(47411368-47411421)
chr1 (121-166)||(52181225-52181270)
chr1 (126-170)||(25787089-25787133)
chr1 (89-171)||(48973345-48973428)
chr1 (121-171)||(16217586-16217636)
chr1 (89-166)||(34531815-34531893)
chr1 (12-57)||(14391265-14391310)
chr1 (12-57)||(20953548-20953593)
[»] chr3 (22 HSPs)
chr3 (15-196)||(9769313-9769500)
chr3 (13-197)||(33149602-33149798)
chr3 (30-197)||(9776976-9777148)
chr3 (27-197)||(29822575-29822751)
chr3 (121-198)||(29821434-29821511)
chr3 (121-197)||(382891-382967)
chr3 (25-173)||(382099-382252)
chr3 (89-171)||(29536859-29536942)
chr3 (126-174)||(42632849-42632897)
chr3 (121-171)||(47808027-47808077)
chr3 (121-171)||(51825541-51825591)
chr3 (12-57)||(7820647-7820692)
chr3 (121-174)||(42633806-42633859)
chr3 (121-197)||(33150600-33150676)
chr3 (122-174)||(41387354-41387406)
chr3 (29-171)||(52293352-52293492)
chr3 (89-171)||(12060785-12060868)
chr3 (89-171)||(47854633-47854716)
chr3 (89-171)||(48825959-48826042)
chr3 (121-175)||(2124171-2124225)
chr3 (125-170)||(47806964-47807009)
chr3 (89-156)||(39287611-39287679)
[»] chr6 (8 HSPs)
chr6 (13-197)||(9754126-9754316)
chr6 (13-197)||(28930920-28931109)
chr6 (121-197)||(28928475-28928551)
chr6 (121-198)||(4030266-4030343)
chr6 (124-197)||(4030786-4030859)
chr6 (27-197)||(24546886-24547062)
chr6 (120-171)||(16269536-16269587)
chr6 (94-136)||(17358980-17359023)
[»] chr5 (3 HSPs)
chr5 (121-197)||(11431385-11431461)
chr5 (121-171)||(1663334-1663384)
chr5 (89-148)||(4567120-4567180)
[»] chr8 (8 HSPs)
chr8 (195-253)||(3171047-3171105)
chr8 (121-170)||(27750541-27750590)
chr8 (121-171)||(3237563-3237613)
chr8 (121-170)||(38589967-38590016)
chr8 (89-166)||(8096451-8096529)
chr8 (121-171)||(31624052-31624102)
chr8 (12-57)||(38665667-38665712)
chr8 (12-57)||(45385608-45385653)
[»] chr2 (10 HSPs)
chr2 (121-197)||(15269012-15269088)
chr2 (94-193)||(18342863-18342965)
chr2 (89-171)||(41312647-41312730)
chr2 (135-197)||(18343824-18343886)
chr2 (89-171)||(3665371-3665454)
chr2 (120-171)||(6208984-6209035)
chr2 (89-167)||(14510415-14510494)
chr2 (89-171)||(33836916-33836999)
chr2 (89-171)||(42246737-42246820)
chr2 (25-174)||(15268524-15268683)
[»] chr7 (11 HSPs)
chr7 (89-175)||(30223863-30223950)
chr7 (121-175)||(22061715-22061769)
chr7 (121-171)||(35128112-35128162)
chr7 (89-175)||(30222788-30222875)
chr7 (89-171)||(41126386-41126469)
chr7 (121-171)||(22060609-22060659)
chr7 (128-197)||(48754116-48754185)
chr7 (89-156)||(41618385-41618453)
chr7 (94-171)||(33458456-33458534)
chr7 (86-171)||(36673719-36673805)
chr7 (12-57)||(48754253-48754298)
[»] scaffold0178 (1 HSPs)
scaffold0178 (89-171)||(2151-2234)


Alignment Details
Target: chr4 (Bit Score: 147; Significance: 1e-77; HSPs: 16)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 15 - 197
Target Start/End: Original strand, 47606411 - 47606596
Alignment:
Q  15 atgaagagggaagaagatgaagattgttggtgatttttaattt-aggaagttcaagacaaacaaggaaagattataaatgatcatatgttgtgagtctat 113  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||  |||||||||||||||||||||||||||||||| |||    
T  47606411 atgaagagggaagaagatgaagattgttggtgatttttaattttaggaaattcaagacaaacggggaaagattataaatgatcatatgttgtgagtttat 47606510  T
Q  114 tgtaaatt--gtgtgctttttaaatccaacccttgatcaccaatcctaagtgacacgtggcaagacttaacggttttagcaaaaaa 197  Q
    ||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  47606511 tgtaaattttgtgtgctttttaaatccaacccttgatcaccaatcctaagtgacacgtggcaagatttaacggttttagcaaaaaa 47606596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 89 - 175
Target Start/End: Complemental strand, 29833601 - 29833514
Alignment:
Q  89 aaatgatcatatgttgtgagtctattgtaaa-ttgtgtgctttttaaatccaacccttgatcaccaatcctaagtgacacgtggcaag 175  Q
    ||||||| |||||||||||||| |||||| | |||||| ||||| ||||| | |||||||||||||||| ||| ||||| ||||||||    
T  29833601 aaatgattatatgttgtgagtccattgtatacttgtgtacttttcaaatctagcccttgatcaccaatcttaattgacatgtggcaag 29833514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 121 - 171
Target Start/End: Original strand, 1273353 - 1273403
Alignment:
Q  121 tgtgtgctttttaaatccaacccttgatcaccaatcctaagtgacacgtgg 171  Q
    |||||||||||||||||||||| ||||||||||||| ||| ||||||||||    
T  1273353 tgtgtgctttttaaatccaaccgttgatcaccaatcttaaatgacacgtgg 1273403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 97 - 198
Target Start/End: Complemental strand, 4373599 - 4373495
Alignment:
Q  97 atatgttgtgagtctattgtaaat--tgtgtgctttttaaatccaacccttgatcaccaatcctaagtgacacgtggcaaga-cttaacggttttagcaa 193  Q
    |||||||||||||| |||||| |   ||||||||||| ||||||| || || |||||||||||||| |||||||||| ||||  ||||||| ||| ||||    
T  4373599 atatgttgtgagtccattgtataccatgtgtgcttttcaaatccagccattaatcaccaatcctaaatgacacgtggaaagaggttaacggattttgcaa 4373500  T
Q  194 aaaac 198  Q
    |||||    
T  4373499 aaaac 4373495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 12 - 171
Target Start/End: Original strand, 15446479 - 15446636
Alignment:
Q  12 gagatgaagagggaagaagatgaagattgttggtgatttttaatttaggaagttcaagacaaacaaggaaagattataaatgatcatatgttgtgagtct 111  Q
    |||||||||||||||||||||||||||||  ||||| ||| |||||   |  || |||| || |||| |||   || |||||||||||||||||||| |     
T  15446479 gagatgaagagggaagaagatgaagattgaaggtgactttaaattttt-atttttaagaaaatcaagaaaaa--tagaaatgatcatatgttgtgagccc 15446575  T
Q  112 attgtaaa-ttgtgtgctttttaaatccaacccttgatcaccaatcctaagtgacacgtgg 171  Q
    ||||||   |||||| ||||| ||||| |||||||||||||||||| ||| ||||| ||||    
T  15446576 attgtatggttgtgtacttttaaaatcaaacccttgatcaccaatcttaaatgacatgtgg 15446636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 121 - 174
Target Start/End: Complemental strand, 37559194 - 37559141
Alignment:
Q  121 tgtgtgctttttaaatccaacccttgatcaccaatcctaagtgacacgtggcaa 174  Q
    |||||||||||||||||||||| ||||||||||||  ||||||||| |||||||    
T  37559194 tgtgtgctttttaaatccaaccgttgatcaccaattttaagtgacatgtggcaa 37559141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 13 - 166
Target Start/End: Original strand, 23153062 - 23153226
Alignment:
Q  13 agatgaagagggaagaagatgaagattgttggtgatttttaattt--------aggaagttcaagacaaacaaggaaagattata--aatgatcatatgt 102  Q
    ||||||||||| | ||||||||||||||||  |||||||||||||        ||||| ||||||| ||| |  ||||||  |||  ||| || ||||||    
T  23153062 agatgaagaggaaggaagatgaagattgttactgatttttaatttttatttttaggaaattcaagagaaatagagaaagacaatagaaattattatatgt 23153161  T
Q  103 tgtgagtctattgta-aattgtgtgctttttaaatccaacccttgatcaccaatcctaagtgaca 166  Q
    |||||||  |||||| ||||||||| |||| ||||||||||||||||||  |||||||| |||||    
T  23153162 tgtgagttcattgtataattgtgtgtttttcaaatccaacccttgatcattaatcctaaatgaca 23153226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 89 - 175
Target Start/End: Original strand, 29834319 - 29834406
Alignment:
Q  89 aaatgatcatatgttgtgagtctattgtaaa-ttgtgtgctttttaaatccaacccttgatcaccaatcctaagtgacacgtggcaag 175  Q
    ||||||| |||||||||||||| |||||| | |||||| ||||| ||||  | |||||||||||||||| ||| ||||| ||||||||    
T  29834319 aaatgattatatgttgtgagtccattgtatacttgtgtacttttcaaatatagcccttgatcaccaatcttaaatgacatgtggcaag 29834406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 127 - 189
Target Start/End: Original strand, 53757908 - 53757971
Alignment:
Q  127 ctttttaaatccaaccctt-gatcaccaatcctaagtgacacgtggcaagacttaacggtttta 189  Q
    ||||||||||||||||||| ||||| ||||| ||| ||||||||| ||||| ||||||||||||    
T  53757908 ctttttaaatccaaccctttgatcatcaatcttaaatgacacgtgccaagagttaacggtttta 53757971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 121 - 171
Target Start/End: Original strand, 5688557 - 5688607
Alignment:
Q  121 tgtgtgctttttaaatccaacccttgatcaccaatcctaagtgacacgtgg 171  Q
    |||||||||| ||||||||||| ||||||| ||||| ||||||||||||||    
T  5688557 tgtgtgctttataaatccaaccgttgatcatcaatcttaagtgacacgtgg 5688607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 121 - 171
Target Start/End: Complemental strand, 26788718 - 26788668
Alignment:
Q  121 tgtgtgctttttaaatccaacccttgatcaccaatcctaagtgacacgtgg 171  Q
    |||||||||||||||| ||||| ||||||||||||| ||| ||||||||||    
T  26788718 tgtgtgctttttaaattcaaccgttgatcaccaatcttaactgacacgtgg 26788668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 121 - 171
Target Start/End: Original strand, 33377284 - 33377334
Alignment:
Q  121 tgtgtgctttttaaatccaacccttgatcaccaatcctaagtgacacgtgg 171  Q
    |||||||||||||||||||||| ||||||||||||| |||  |||||||||    
T  33377284 tgtgtgctttttaaatccaaccgttgatcaccaatcttaaacgacacgtgg 33377334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 121 - 171
Target Start/End: Original strand, 55953772 - 55953822
Alignment:
Q  121 tgtgtgctttttaaatccaacccttgatcaccaatcctaagtgacacgtgg 171  Q
    |||||||||||||||| ||||| ||||||||||||| ||| ||||||||||    
T  55953772 tgtgtgctttttaaattcaaccgttgatcaccaatcttaaatgacacgtgg 55953822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 121 - 189
Target Start/End: Complemental strand, 53757571 - 53757503
Alignment:
Q  121 tgtgtgctttttaaatccaacccttgatcaccaatcctaagtgacacgtggcaagacttaacggtttta 189  Q
    ||||||||||||| |||||||| ||||| | ||||| ||| ||||  ||||||||||||||||| ||||    
T  53757571 tgtgtgctttttagatccaacctttgattatcaatcttaaatgacttgtggcaagacttaacggattta 53757503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 121 - 156
Target Start/End: Original strand, 44128254 - 44128289
Alignment:
Q  121 tgtgtgctttttaaatccaacccttgatcaccaatc 156  Q
    |||||||||||||||||||||| |||||||||||||    
T  44128254 tgtgtgctttttaaatccaaccgttgatcaccaatc 44128289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 123 - 171
Target Start/End: Original strand, 3217532 - 3217580
Alignment:
Q  123 tgtgctttttaaatccaacccttgatcaccaatcctaagtgacacgtgg 171  Q
    |||||||||||||||||||| ||||||| ||||  ||| ||||||||||    
T  3217532 tgtgctttttaaatccaaccgttgatcatcaattttaactgacacgtgg 3217580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0012 (Bit Score: 139; Significance: 8e-73; HSPs: 2)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 139; E-Value: 8e-73
Query Start/End: Original strand, 15 - 197
Target Start/End: Original strand, 243399 - 243584
Alignment:
Q  15 atgaagagggaagaagatgaagattgttggtgatttttaattt-aggaagttcaagacaaacaaggaaagattataaatgatcatatgttgtgagtctat 113  Q
    ||||||||||||||||||||||||||||||| ||||||||||| ||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  243399 atgaagagggaagaagatgaagattgttggtaatttttaattttaggaaattcaagacaaacagggaaagattataaatgatcatatgttgtgagtctat 243498  T
Q  114 tgtaaatt--gtgtgctttttaaatccaacccttgatcaccaatcctaagtgacacgtggcaagacttaacggttttagcaaaaaa 197  Q
     |||||||  ||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||| |||||||||||||    
T  243499 cgtaaattttgtgtgctttttaaatccaatccttgatcactaatcctaagtgacacgtggcaagacttaacgattttagcaaaaaa 243584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0012; HSP #2
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 12 - 197
Target Start/End: Complemental strand, 242752 - 242564
Alignment:
Q  12 gagatgaagagggaagaagatgaagattgttggtgatttttaattt-aggaagttcaagacaaacaaggaaagattataaatgatcatatgttgtgagtc 110  Q
    ||||||||||||||| |||||||||||||||||||||||||||||| || || ||||||||||| | |||||||||||||||||||||||||||||||||    
T  242752 gagatgaagagggaaaaagatgaagattgttggtgatttttaattttagaaaattcaagacaaatagggaaagattataaatgatcatatgttgtgagtc 242653  T
Q  111 tattgtaaatt--gtgtgctttttaaatccaacccttgatcaccaatcctaagtgacacgtggcaagacttaacggttttagcaaaaaa 197  Q
     ||||||||||  |||||||||| ||||| ||||||||||||||||| ||||||||||| |||||||||||||| ||||||||||||||    
T  242652 cattgtaaattttgtgtgcttttcaaatcaaacccttgatcaccaattctaagtgacacatggcaagacttaacagttttagcaaaaaa 242564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 134; Significance: 7e-70; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 134; E-Value: 7e-70
Query Start/End: Original strand, 12 - 197
Target Start/End: Complemental strand, 6709977 - 6709789
Alignment:
Q  12 gagatgaagagggaagaagatgaagattgttggtgatttttaattt-aggaagttcaagacaaacaaggaaagattataaatgatcatatgttgtgagtc 110  Q
    |||||||||||||||||||||||||||||||||||||||||||||| || || ||||||||||| | |||||||||||||||||||||||||||||||||    
T  6709977 gagatgaagagggaagaagatgaagattgttggtgatttttaattttagaaaattcaagacaaatagggaaagattataaatgatcatatgttgtgagtc 6709878  T
Q  111 tattgtaaatt--gtgtgctttttaaatccaacccttgatcaccaatcctaagtgacacgtggcaagacttaacggttttagcaaaaaa 197  Q
     ||||||||||  ||||| |||| ||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  6709877 cattgtaaattttgtgtgtttttcaaatcaaacccttgatcaccaatcctaagtgacacgtggcaagacttaacagttttagcaaaaaa 6709789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 15 - 178
Target Start/End: Original strand, 6710636 - 6710801
Alignment:
Q  15 atgaagagggaagaagatgaagattgttggtgatttttaattt-aggaagttcaagacaaacaaggaaagattataaatgatcatatgttgtgagtctat 113  Q
    ||||||||||||||||||||||||||||||| ||||||||||| ||||| ||||||||||||| | ||||||||||||||||||||||||||||||||||    
T  6710636 atgaagagggaagaagatgaagattgttggtaatttttaattttaggaaattcaagacaaacacg-aaagattataaatgatcatatgttgtgagtctat 6710734  T
Q  114 tgtaaatt--gtgtgctttttaaatccaacccttgatcaccaatcctaagtgacacgtggcaagact 178  Q
     |||||||  ||||||||||||||| |||||||||||||||||| |||||||||| |||||||||||    
T  6710735 cgtaaattttgtgtgctttttaaattcaacccttgatcaccaattctaagtgacatgtggcaagact 6710801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 121 - 170
Target Start/End: Complemental strand, 25786164 - 25786115
Alignment:
Q  121 tgtgtgctttttaaatccaacccttgatcaccaatcctaagtgacacgtg 170  Q
    |||||||||||||||||||||| ||||||||||||| ||| |||||||||    
T  25786164 tgtgtgctttttaaatccaaccgttgatcaccaatcttaaatgacacgtg 25786115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 89 - 171
Target Start/End: Complemental strand, 2971929 - 2971846
Alignment:
Q  89 aaatgatcatatgttgtgagtctattgtaaatt-gtgtgctttttaaatccaacccttgatcaccaatcctaagtgacacgtgg 171  Q
    |||| ||||||||||||||||  ||| || ||| ||||||||| |||||||| ||||||||| |||||| ||| ||||||||||    
T  2971929 aaataatcatatgttgtgagttcattttatatttgtgtgctttctaaatccagcccttgatcgccaatcttaaatgacacgtgg 2971846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 89 - 175
Target Start/End: Original strand, 25889379 - 25889466
Alignment:
Q  89 aaatgatcatatgttgtgagtctattgtaaa-ttgtgtgctttttaaatccaacccttgatcaccaatcctaagtgacacgtggcaag 175  Q
    ||||||| |||||||||||||| |||||| | ||||||  |||| ||||| | |||||||||||||||| ||| ||||| ||||||||    
T  25889379 aaatgattatatgttgtgagtccattgtatacttgtgtatttttcaaatctagcccttgatcaccaatcttaaatgacatgtggcaag 25889466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 89 - 161
Target Start/End: Complemental strand, 14391236 - 14391163
Alignment:
Q  89 aaatgatcatatgttgtgagtctattgtaaa-ttgtgtgctttttaaatccaacccttgatcaccaatcctaag 161  Q
    |||||||||||||||||||| | |||||| | |||||| ||||| ||||| |||||||||||| ||||| ||||    
T  14391236 aaatgatcatatgttgtgagcccattgtatacttgtgtacttttcaaatcaaacccttgatcatcaatcttaag 14391163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 121 - 174
Target Start/End: Original strand, 47411368 - 47411421
Alignment:
Q  121 tgtgtgctttttaaatccaacccttgatcaccaatcctaagtgacacgtggcaa 174  Q
    |||||||||||||||| ||||| ||||||||||||| ||| ||||| |||||||    
T  47411368 tgtgtgctttttaaattcaaccgttgatcaccaatcttaaatgacatgtggcaa 47411421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 121 - 166
Target Start/End: Original strand, 52181225 - 52181270
Alignment:
Q  121 tgtgtgctttttaaatccaacccttgatcaccaatcctaagtgaca 166  Q
    |||||||||||||||||||||| ||||||||||||| ||| |||||    
T  52181225 tgtgtgctttttaaatccaaccgttgatcaccaatcttaaatgaca 52181270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 126 - 170
Target Start/End: Original strand, 25787089 - 25787133
Alignment:
Q  126 gctttttaaatccaacccttgatcaccaatcctaagtgacacgtg 170  Q
    ||||||||||||||||| ||||||||||||| ||| |||||||||    
T  25787089 gctttttaaatccaaccgttgatcaccaatcttaaatgacacgtg 25787133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 89 - 171
Target Start/End: Complemental strand, 48973428 - 48973345
Alignment:
Q  89 aaatgatcatatgttgtgagtctattgtaaa-ttgtgtgctttttaaatccaacccttgatcaccaatcctaagtgacacgtgg 171  Q
    ||||||| |||||||||||| | |||||| | |||||| ||||| ||||| | |||||||||||||||| ||| ||||| ||||    
T  48973428 aaatgattatatgttgtgagcccattgtatacttgtgtacttttcaaatctagcccttgatcaccaatcttaaatgacatgtgg 48973345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 121 - 171
Target Start/End: Complemental strand, 16217636 - 16217586
Alignment:
Q  121 tgtgtgctttttaaatccaacccttgatcaccaatcctaagtgacacgtgg 171  Q
    ||||||||||||||||| |||| |||||| |||||| ||| ||||||||||    
T  16217636 tgtgtgctttttaaatctaaccgttgatcgccaatcttaaatgacacgtgg 16217586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 89 - 166
Target Start/End: Complemental strand, 34531893 - 34531815
Alignment:
Q  89 aaatgatcatatgttgtgagtctattgtaaatt-gtgtgctttttaaatccaacccttgatcaccaatcctaagtgaca 166  Q
    ||||||| |||||||||||| | |||||| ||| |||| ||||| ||||| | |||||||||||||||| ||| |||||    
T  34531893 aaatgattatatgttgtgagcccattgtatatttgtgtacttttcaaatctagcccttgatcaccaatcttaaatgaca 34531815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 12 - 57
Target Start/End: Complemental strand, 14391310 - 14391265
Alignment:
Q  12 gagatgaagagggaagaagatgaagattgttggtgatttttaattt 57  Q
    ||||| ||||||||||||||||||||||| |||||| ||| |||||    
T  14391310 gagattaagagggaagaagatgaagattgatggtgaatttcaattt 14391265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 12 - 57
Target Start/End: Complemental strand, 20953593 - 20953548
Alignment:
Q  12 gagatgaagagggaagaagatgaagattgttggtgatttttaattt 57  Q
    |||||||||||| |||||||||||||||  | ||||||||||||||    
T  20953593 gagatgaagaggaaagaagatgaagatttatagtgatttttaattt 20953548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 79; Significance: 5e-37; HSPs: 22)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 15 - 196
Target Start/End: Original strand, 9769313 - 9769500
Alignment:
Q  15 atgaagagggaagaagatgaagattgttggtgatttttaattt-aggaagttcaagacaaacaaggaaagat--tataaatgatcatatgttgtgagtct 111  Q
    |||||||||||||||||||||| |||||||| ||||||||||| | ||| ||||||| ||| || |||||||  ||||||| |||||||||||||||||     
T  9769313 atgaagagggaagaagatgaagtttgttggtaatttttaattttaagaaattcaagataaataaagaaagataatataaattatcatatgttgtgagtca 9769412  T
Q  112 attgtaaatt---gtgtgctttttaaatccaacccttgatcaccaatcctaagtgacacgtggcaagacttaacggttttagcaaaaa 196  Q
    ||||||||||   || || |||| ||||||||||  | |||||||||||||||||||||||||| ||  ||||| |||||||||||||    
T  9769413 attgtaaatttttgtctggttttcaaatccaacctctcatcaccaatcctaagtgacacgtggcgagtgttaacagttttagcaaaaa 9769500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 13 - 197
Target Start/End: Complemental strand, 33149798 - 33149602
Alignment:
Q  13 agatgaagagggaagaagatgaagattgttggtgatttttaattt--------aggaagttcaagacaaacaaggaaagattat-aaatgatcatatgtt 103  Q
    ||||||||||||||||||||||||||| ||||| |||||||||||        ||||| || |||||||| |||||||||| || |||| ||||||||||    
T  33149798 agatgaagagggaagaagatgaagattattggtaatttttaatttgtagttttaggaaatttaagacaaataaggaaagataattaaattatcatatgtt 33149699  T
Q  104 gtgagtctattgtaaat---tgtgtgctttttaaatccaacccttgatcaccaatcctaagtgacacgtggcaagacttaacggttttagcaaaaaa 197  Q
    |  |||| ||| || ||   |||| |||||||||||| ||||||||||||| |||| ||||||||||||||||||  |||||||||||| |||||||    
T  33149698 gctagtccattatatatgtgtgtgcgctttttaaatctaacccttgatcacaaatcttaagtgacacgtggcaagggttaacggttttaacaaaaaa 33149602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 30 - 197
Target Start/End: Complemental strand, 9777148 - 9776976
Alignment:
Q  30 gatgaagattgttggtgatttttaa-tttaggaagttcaagacaaacaaggaaagat--tataaatgatcatatgttgtgagtctattgtaaat---tgt 123  Q
    ||||||||||||||||||||||||| |||||||| || ||||||||||  |||||||  ||||||| |||||||||||||| || |||||||||   |||    
T  9777148 gatgaagattgttggtgatttttaattttaggaaatttaagacaaacagagaaagataatataaattatcatatgttgtgaatccattgtaaatttgtgt 9777049  T
Q  124 gtgctttttaaatccaacccttgatcaccaatcctaagtgacacgtggcaagacttaacggttttagcaaaaaa 197  Q
    |||| ||| |||||||||| ||||||| ||||||||| ||||| ||||||||  ||||| | | ||||||||||    
T  9777048 gtgc-tttcaaatccaacctttgatcaacaatcctaaatgacatgtggcaagggttaacagatgtagcaaaaaa 9776976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 27 - 197
Target Start/End: Original strand, 29822575 - 29822751
Alignment:
Q  27 gaagatgaagattgttggtgatttttaattt-aggaagttcaagacaaacaaggaaagat--tataaatgatcatatgttgtgagtctattgtaaatt-- 121  Q
    ||||||||||||| || |||||||||||||| | ||| || |||||||| ||| ||| ||  ||||||| |||||||    ||||||||||||| |||      
T  29822575 gaagatgaagattatttgtgatttttaattttaagaaattaaagacaaataagtaaatataatataaattatcatatacattgagtctattgtatatttg 29822674  T
Q  122 -gtgtgctttttaaatccaacccttgatcaccaatcctaagtgacacgtggcaagacttaacggttttagcaaaaaa 197  Q
     | ||||||||||||||||||| || || | ||||| ||||||||| ||||||||| |||||||||||| |||||||    
T  29822675 tgagtgctttttaaatccaaccattcataatcaatcttaagtgacatgtggcaagagttaacggttttaacaaaaaa 29822751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 121 - 198
Target Start/End: Complemental strand, 29821511 - 29821434
Alignment:
Q  121 tgtgtgctttttaaatccaacccttgatcaccaatcctaagtgacacgtggcaagacttaacggttttagcaaaaaac 198  Q
    ||||||||||||||||| || | ||||| | ||||| |||||||||||| |||||| |||||||||||| ||||||||    
T  29821511 tgtgtgctttttaaatctaatcattgattatcaatcttaagtgacacgtagcaagagttaacggttttaacaaaaaac 29821434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 121 - 197
Target Start/End: Original strand, 382891 - 382967
Alignment:
Q  121 tgtgtgctttttaaatccaacccttgatcaccaatcctaagtgacacgtggcaagacttaacggttttagcaaaaaa 197  Q
    ||||||||||| ||||  |||||||||||||||||| ||| ||||||||||||||  ||||||||||| | ||||||    
T  382891 tgtgtgcttttcaaatttaacccttgatcaccaatcataaatgacacgtggcaagtgttaacggtttttgtaaaaaa 382967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 25 - 173
Target Start/End: Complemental strand, 382252 - 382099
Alignment:
Q  25 aagaagatgaagattgttggtgatttttaa-tttaggaagttcaagacaaacaaggaaa-gat--tataaatgatcatatgttgtgagtctattgta--- 117  Q
    ||||||||||||||||||| |||||||||| |||| ||| ||||||||||  ||||||| |||  || |||| ||||||||||| ||||||||||||       
T  382252 aagaagatgaagattgttgatgatttttaattttaagaaattcaagacaa--aaggaaatgataataaaaattatcatatgttgcgagtctattgtatcc 382155  T
Q  118 aattgtgtgctttttaaatccaacccttgatcaccaatcctaagtgacacgtggca 173  Q
       ||||||||||| |||| || ||||||||||||||||  || ||||| ||||||    
T  382154 ttgtgtgtgcttttaaaattcagcccttgatcaccaatcacaaatgacatgtggca 382099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 89 - 171
Target Start/End: Complemental strand, 29536942 - 29536859
Alignment:
Q  89 aaatgatcatatgttgtgagtctattgta-aattgtgtgctttttaaatccaacccttgatcaccaatcctaagtgacacgtgg 171  Q
    ||||||||||||||||||||||||||||| | ||| || ||||| ||||| ||||||||||||| |||| ||| ||||| ||||    
T  29536942 aaatgatcatatgttgtgagtctattgtatacttgcgtacttttcaaatctaacccttgatcacaaatcttaaatgacatgtgg 29536859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 126 - 174
Target Start/End: Complemental strand, 42632897 - 42632849
Alignment:
Q  126 gctttttaaatccaacccttgatcaccaatcctaagtgacacgtggcaa 174  Q
    ||||||||||||||||| ||||||||||||| ||| |||||||||||||    
T  42632897 gctttttaaatccaaccgttgatcaccaatcttaaatgacacgtggcaa 42632849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 121 - 171
Target Start/End: Original strand, 47808027 - 47808077
Alignment:
Q  121 tgtgtgctttttaaatccaacccttgatcaccaatcctaagtgacacgtgg 171  Q
    |||||||||||||||||||||| ||||||||| ||| ||| ||||||||||    
T  47808027 tgtgtgctttttaaatccaaccgttgatcaccgatcttaactgacacgtgg 47808077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 121 - 171
Target Start/End: Original strand, 51825541 - 51825591
Alignment:
Q  121 tgtgtgctttttaaatccaacccttgatcaccaatcctaagtgacacgtgg 171  Q
    |||||||||||||||| ||||| ||||||||||||| ||| ||||||||||    
T  51825541 tgtgtgctttttaaattcaaccattgatcaccaatcttaactgacacgtgg 51825591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 12 - 57
Target Start/End: Complemental strand, 7820692 - 7820647
Alignment:
Q  12 gagatgaagagggaagaagatgaagattgttggtgatttttaattt 57  Q
    ||||||||||||||||||||| ||||||| |||||||||| |||||    
T  7820692 gagatgaagagggaagaagataaagattgatggtgattttaaattt 7820647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 121 - 174
Target Start/End: Original strand, 42633806 - 42633859
Alignment:
Q  121 tgtgtgctttttaaatccaacccttgatcaccaatcctaagtgacacgtggcaa 174  Q
    |||||||||||||||||||||| ||||| ||||||| ||| ||||| |||||||    
T  42633806 tgtgtgctttttaaatccaaccgttgattaccaatcttaaatgacatgtggcaa 42633859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 121 - 197
Target Start/End: Original strand, 33150600 - 33150676
Alignment:
Q  121 tgtgtgctttttaaatccaacccttgatcaccaatcctaagtgacacgtggcaagacttaacggttttagcaaaaaa 197  Q
    ||||||||||| | |||||||| ||||| ||||||| |||||||||||| | ||   |||||||||||| |||||||    
T  33150600 tgtgtgcttttcatatccaaccattgataaccaatcttaagtgacacgtagtaatggttaacggttttaacaaaaaa 33150676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 122 - 174
Target Start/End: Original strand, 41387354 - 41387406
Alignment:
Q  122 gtgtgctttttaaatccaacccttgatcaccaatcctaagtgacacgtggcaa 174  Q
    ||||||||||||||||||||| ||||||||||||  ||| ||||| |||||||    
T  41387354 gtgtgctttttaaatccaaccgttgatcaccaattttaaatgacatgtggcaa 41387406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 29 - 171
Target Start/End: Original strand, 52293352 - 52293492
Alignment:
Q  29 agatgaagattgttggtgatttttaatttaggaagttcaagacaaacaaggaaagattataaatgatcatatgttgtgagtctattgta-aattgtgtgc 127  Q
    |||||||||||| |||||||||| ||||||  || || | || || ||||  |||| || ||||||| |||||||||||| |||||||| | |||||| |    
T  52293352 agatgaagattgatggtgattttaaatttat-aattttaggaaaatcaag--aagaatagaaatgattatatgttgtgagcctattgtatacttgtgtac 52293448  T
Q  128 tttttaaatccaacccttgatcaccaatcctaagtgacacgtgg 171  Q
    |||| ||||  | |||||||||||||||| ||| ||||| ||||    
T  52293449 ttttcaaatatagcccttgatcaccaatcttaaatgacatgtgg 52293492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 89 - 171
Target Start/End: Complemental strand, 12060868 - 12060785
Alignment:
Q  89 aaatgatcatatgttgtgagtctattgtaaatt-gtgtgctttttaaatccaacccttgatcaccaatcctaagtgacacgtgg 171  Q
    |||||||||| ||||| |||| ||||||| ||| | ||||||| ||||| || || ||||||||||||| ||||||||| ||||    
T  12060868 aaatgatcatctgttgcgagtttattgtatatttgcgtgctttctaaattcagccattgatcaccaatcttaagtgacatgtgg 12060785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 89 - 171
Target Start/End: Complemental strand, 47854716 - 47854633
Alignment:
Q  89 aaatgatcatatgttgtgagtctattgta-aattgtgtgctttttaaatccaacccttgatcaccaatcctaagtgacacgtgg 171  Q
    |||||||||||||||||||||| |||||| | ||| || ||||| ||||| || |||||||||| |||| ||| ||||| ||||    
T  47854716 aaatgatcatatgttgtgagtccattgtatacttgcgtacttttcaaatctaatccttgatcacaaatcttaaatgacatgtgg 47854633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 89 - 171
Target Start/End: Complemental strand, 48826042 - 48825959
Alignment:
Q  89 aaatgatcatatgttgtgagtctattgtaaa-ttgtgtgctttttaaatccaacccttgatcaccaatcctaagtgacacgtgg 171  Q
    ||||||| |||||||||||| | |||||| | |||||| ||||| ||| | |||||||||||||||||| ||| ||||| ||||    
T  48826042 aaatgattatatgttgtgagcccattgtatacttgtgtacttttcaaacctaacccttgatcaccaatcttaaatgacatgtgg 48825959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 121 - 175
Target Start/End: Complemental strand, 2124225 - 2124171
Alignment:
Q  121 tgtgtgctttttaaatccaacccttgatcaccaatcctaagtgacacgtggcaag 175  Q
    |||||||||||||||||||||| |||||||| |||| ||| ||||| ||| ||||    
T  2124225 tgtgtgctttttaaatccaaccgttgatcactaatcttaaatgacatgtgacaag 2124171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 125 - 170
Target Start/End: Complemental strand, 47807009 - 47806964
Alignment:
Q  125 tgctttttaaatccaacccttgatcaccaatcctaagtgacacgtg 170  Q
    |||||||||||||||||| ||||||||| ||| ||| |||||||||    
T  47807009 tgctttttaaatccaaccattgatcaccgatcttaactgacacgtg 47806964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 89 - 156
Target Start/End: Complemental strand, 39287679 - 39287611
Alignment:
Q  89 aaatgatcatatgttgtgagtctattgtaaatt-gtgtgctttttaaatccaacccttgatcaccaatc 156  Q
    ||||||| |||||||||||| | |||||| ||| |||| ||||| ||||| | ||||||||||||||||    
T  39287679 aaatgattatatgttgtgagcccattgtatatttgtgtacttttcaaatctagcccttgatcaccaatc 39287611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 66; Significance: 3e-29; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 13 - 197
Target Start/End: Original strand, 9754126 - 9754316
Alignment:
Q  13 agatgaagagggaagaagatgaagattgttggtgatttttaa-tttaggaagttcaagacaaacaaggaaagat--tataaatgatcatatgttgtgagt 109  Q
    |||||||||||||||||| || ||||| |||||||||||||| |||||||| ||| ||||||| ||  ||||||  ||||||| |||||||  ||||| |    
T  9754126 agatgaagagggaagaaggtggagattattggtgatttttaattttaggaaattcgagacaaataaaaaaagataatataaattatcatatactgtgaat 9754225  T
Q  110 ctattgtaaa---ttgtgtgctttttaaatccaacccttgatcaccaatcctaagtgacacgtggcaagacttaacggttttagcaaaaaa 197  Q
    |||||||| |    |||| |||||  |||| ||||||||||||||||||||||||||||| |||||||   ||||| ||||||||||||||    
T  9754226 ctattgtatactcgtgtgagctttacaaattcaacccttgatcaccaatcctaagtgacatgtggcaaaggttaacagttttagcaaaaaa 9754316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 13 - 197
Target Start/End: Original strand, 28930920 - 28931109
Alignment:
Q  13 agatgaagagggaagaagatgaagattgttggtgatttttaattt-aggaagttcaagacaaacaaggaaagat--tataaatgatcatatgttgtgagt 109  Q
    ||||||||||| ||||| ||||||||| || |||||||||||||| | ||| || |||||||| || |||| ||  ||||||| |||||||  ||| |||    
T  28930920 agatgaagagg-aagaatatgaagattttttgtgatttttaattttaagaaattaaagacaaataatgaaatataatataaattatcatatactgtaagt 28931018  T
Q  110 ctattgtaaatt---gtgtgctttttaaatccaacccttgatcaccaatcctaagtgacacgtggcaagacttaacggttttagcaaaaaa 197  Q
      |||||| |||   | ||||||||||||||||||||||||||| ||||| ||||||||| ||||||||| ||  |||||||| |||||||    
T  28931019 tcattgtatatttgtgagtgctttttaaatccaacccttgatcatcaatcttaagtgacatgtggcaagagttggcggttttaacaaaaaa 28931109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 121 - 197
Target Start/End: Complemental strand, 28928551 - 28928475
Alignment:
Q  121 tgtgtgctttttaaatccaacccttgatcaccaatcctaagtgacacgtggcaagacttaacggttttagcaaaaaa 197  Q
    ||||||||||||| |||||||||||||| | ||||| ||||||| | |||||||||||||||||||||| |||||||    
T  28928551 tgtgtgctttttagatccaacccttgattatcaatcttaagtgatatgtggcaagacttaacggttttaacaaaaaa 28928475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 121 - 198
Target Start/End: Complemental strand, 4030343 - 4030266
Alignment:
Q  121 tgtgtgctttttaaatccaacccttgatcaccaatcctaagtgacacgtggcaagacttaacggttttagcaaaaaac 198  Q
    ||||||||||||||||||| || ||||| | ||||  ||||||||||||||||||| ||||| |||||| ||||||||    
T  4030343 tgtgtgctttttaaatccatccattgattatcaattttaagtgacacgtggcaagagttaacagttttaacaaaaaac 4030266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 124 - 197
Target Start/End: Original strand, 4030786 - 4030859
Alignment:
Q  124 gtgctttttaaatccaacccttgatcaccaatcctaagtgacacgtggcaagacttaacggttttagcaaaaaa 197  Q
    ||||||||||||||||||| || || | ||||| ||||||||| |||| |||| |||||||||||| |||||||    
T  4030786 gtgctttttaaatccaaccattcataatcaatcttaagtgacatgtggtaagagttaacggttttaacaaaaaa 4030859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 27 - 197
Target Start/End: Original strand, 24546886 - 24547062
Alignment:
Q  27 gaagatgaagattgttggtgatttttaattt-aggaagttcaagacaaacaaggaaagattata--aatgatcatatgttgtgagtctattgtaaatt-- 121  Q
    |||| |||||||| || |||||||||||||| | ||| || |||| ||| ||||||| || |||  ||| ||||||| |  |||||| |||||| |||      
T  24546886 gaaggtgaagattatttgtgatttttaattttaagaaattaaagaaaaataaggaaatataatagaaattatcatatatattgagtccattgtatatttg 24546985  T
Q  122 -gtgtgctttttaaatccaacccttgatcaccaatcctaagtgacacgtggcaagacttaacggttttagcaaaaaa 197  Q
     | |||||| |||||||||||| ||||| | ||||| ||||||||| ||||||| | |||||||||||  |||||||    
T  24546986 tgagtgcttattaaatccaaccattgattatcaatcttaagtgacatgtggcaacagttaacggttttgacaaaaaa 24547062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 120 - 171
Target Start/End: Original strand, 16269536 - 16269587
Alignment:
Q  120 ttgtgtgctttttaaatccaacccttgatcaccaatcctaagtgacacgtgg 171  Q
    ||||| ||||| ||||||||||||||||||||||||| ||| | ||||||||    
T  16269536 ttgtgcgctttctaaatccaacccttgatcaccaatcttaaattacacgtgg 16269587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 94 - 136
Target Start/End: Complemental strand, 17359023 - 17358980
Alignment:
Q  94 atcatatgttgtgagtctattgta-aattgtgtgctttttaaat 136  Q
    ||||||||||||||||| |||||| |||||||||||||||||||    
T  17359023 atcatatgttgtgagtcaattgtataattgtgtgctttttaaat 17358980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 53; Significance: 2e-21; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 121 - 197
Target Start/End: Original strand, 11431385 - 11431461
Alignment:
Q  121 tgtgtgctttttaaatccaacccttgatcaccaatcctaagtgacacgtggcaagacttaacggttttagcaaaaaa 197  Q
    |||| ||||||||||||||||| || |||||||||||||||||||| ||||||||||||||| |||||| |||||||    
T  11431385 tgtgcgctttttaaatccaaccattaatcaccaatcctaagtgacatgtggcaagacttaacagttttaacaaaaaa 11431461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 121 - 171
Target Start/End: Complemental strand, 1663384 - 1663334
Alignment:
Q  121 tgtgtgctttttaaatccaacccttgatcaccaatcctaagtgacacgtgg 171  Q
    |||||||||||||||||||||| ||||||||| ||| ||| | ||||||||    
T  1663384 tgtgtgctttttaaatccaaccgttgatcaccgatcttaactaacacgtgg 1663334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 89 - 148
Target Start/End: Complemental strand, 4567180 - 4567120
Alignment:
Q  89 aaatgatcatatgttgtgagtctattgta-aattgtgtgctttttaaatccaacccttgat 148  Q
    ||||||| |||||||||||||| |||||| | || ||| ||||||||||| ||||||||||    
T  4567180 aaatgattatatgttgtgagtccattgtatacttatgtactttttaaatctaacccttgat 4567120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 51; Significance: 3e-20; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 195 - 253
Target Start/End: Original strand, 3171047 - 3171105
Alignment:
Q  195 aaacattccccatgaacgcacccaccactaaattatacaagcaatactaaacaaagaat 253  Q
    ||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||    
T  3171047 aaacattccccgtgaacgcacccaccactaaattatacaagtaatactaaacaaagaat 3171105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 121 - 170
Target Start/End: Original strand, 27750541 - 27750590
Alignment:
Q  121 tgtgtgctttttaaatccaacccttgatcaccaatcctaagtgacacgtg 170  Q
    |||||||||||||||||||||| ||||||||||||| ||| |||||||||    
T  27750541 tgtgtgctttttaaatccaaccgttgatcaccaatcttaactgacacgtg 27750590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 121 - 171
Target Start/End: Complemental strand, 3237613 - 3237563
Alignment:
Q  121 tgtgtgctttttaaatccaacccttgatcaccaatcctaagtgacacgtgg 171  Q
    |||||||||||||||||||||  ||||||||||||| ||| ||||||||||    
T  3237613 tgtgtgctttttaaatccaactgttgatcaccaatcttaactgacacgtgg 3237563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 121 - 170
Target Start/End: Complemental strand, 38590016 - 38589967
Alignment:
Q  121 tgtgtgctttttaaatccaacccttgatcaccaatcctaagtgacacgtg 170  Q
    |||||||||||||||| ||||| ||||||||||||| ||| |||||||||    
T  38590016 tgtgtgctttttaaattcaaccgttgatcaccaatcttaaatgacacgtg 38589967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 89 - 166
Target Start/End: Original strand, 8096451 - 8096529
Alignment:
Q  89 aaatgatcatatgttgtgagtctattgtaaatt-gtgtgctttttaaatccaacccttgatcaccaatcctaagtgaca 166  Q
    |||||||||| ||||| |||| ||||||| ||| | ||||||| |||||||| || ||||||||||||| ||| |||||    
T  8096451 aaatgatcatgtgttgcgagtttattgtatatttgcgtgctttctaaatccagccattgatcaccaatcttaaatgaca 8096529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 121 - 171
Target Start/End: Complemental strand, 31624102 - 31624052
Alignment:
Q  121 tgtgtgctttttaaatccaacccttgatcaccaatcctaagtgacacgtgg 171  Q
    |||||||||| | ||||||||| ||||||| ||||| ||||||||||||||    
T  31624102 tgtgtgctttattaatccaaccgttgatcatcaatcttaagtgacacgtgg 31624052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 12 - 57
Target Start/End: Original strand, 38665667 - 38665712
Alignment:
Q  12 gagatgaagagggaagaagatgaagattgttggtgatttttaattt 57  Q
    |||||| ||||| | |||||||||||||| ||||||||||||||||    
T  38665667 gagatggagaggaaggaagatgaagattgatggtgatttttaattt 38665712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 12 - 57
Target Start/End: Original strand, 45385608 - 45385653
Alignment:
Q  12 gagatgaagagggaagaagatgaagattgttggtgatttttaattt 57  Q
    |||||||||||| ||||||||||| |||| | ||||||||||||||    
T  45385608 gagatgaagaggaaagaagatgaatattgatagtgatttttaattt 45385653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 45; Significance: 1e-16; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 121 - 197
Target Start/End: Original strand, 15269012 - 15269088
Alignment:
Q  121 tgtgtgctttttaaatccaacccttgatcaccaatcctaagtgacacgtggcaagacttaacggttttagcaaaaaa 197  Q
    ||||||||||| ||||| |||||||||||||||||| ||| ||||| ||||||||| ||||||||||| | ||||||    
T  15269012 tgtgtgcttttcaaatctaacccttgatcaccaatcataaatgacatgtggcaagagttaacggtttttgtaaaaaa 15269088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 94 - 193
Target Start/End: Complemental strand, 18342965 - 18342863
Alignment:
Q  94 atcatatgttgtgagtctattgtaaattgtgtgc---tttttaaatccaacccttgatcaccaatcctaagtgacacgtggcaagacttaacggttttag 190  Q
    ||||||||||| ||||| ||| |||||||||||    ||||||||||||||| || |||| |||||| ||||||||| |||||||  ||||| |||||||    
T  18342965 atcatatgttgagagtccattctaaattgtgtgtgcttttttaaatccaacctttaatcatcaatcccaagtgacacatggcaagggttaacagttttag 18342866  T
Q  191 caa 193  Q
    |||    
T  18342865 caa 18342863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 89 - 171
Target Start/End: Complemental strand, 41312730 - 41312647
Alignment:
Q  89 aaatgatcatatgttgtgagtctattgtaaat-tgtgtgctttttaaatccaacccttgatcaccaatcctaagtgacacgtgg 171  Q
    ||||||| |||||||||||||| |||||| |  ||||| ||||| ||||| |||||||||||||||||| ||| ||||| ||||    
T  41312730 aaatgattatatgttgtgagtccattgtatacctgtgtacttttcaaatctaacccttgatcaccaatcttaaatgacatgtgg 41312647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 135 - 197
Target Start/End: Original strand, 18343824 - 18343886
Alignment:
Q  135 atccaacccttgatcaccaatcctaagtgacacgtggcaagacttaacggttttagcaaaaaa 197  Q
    |||||||||||||||||||||  |||||||||| | ||||   ||||||||||||||||||||    
T  18343824 atccaacccttgatcaccaattttaagtgacacatagcaaaggttaacggttttagcaaaaaa 18343886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 89 - 171
Target Start/End: Complemental strand, 3665454 - 3665371
Alignment:
Q  89 aaatgatcatatgttgtgagtctattgta-aattgtgtgctttttaaatccaacccttgatcaccaatcctaagtgacacgtgg 171  Q
    ||||||| |||||||||||| |||||||| | |||||| ||||| ||||| |  ||||||||||||||| ||| ||||| ||||    
T  3665454 aaatgattatatgttgtgagcctattgtatacttgtgtacttttcaaatctagtccttgatcaccaatcttaaatgacatgtgg 3665371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 120 - 171
Target Start/End: Original strand, 6208984 - 6209035
Alignment:
Q  120 ttgtgtgctttttaaatccaacccttgatcaccaatcctaagtgacacgtgg 171  Q
    |||||| ||||||||||| |||||||||||||||||| ||| ||||| ||||    
T  6208984 ttgtgtactttttaaatctaacccttgatcaccaatcttaaatgacatgtgg 6209035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 89 - 167
Target Start/End: Original strand, 14510415 - 14510494
Alignment:
Q  89 aaatgatcatatgttgtgagtctattgta-aattgtgtgctttttaaatccaacccttgatcaccaatcctaagtgacac 167  Q
    |||||||||||||||||||||  |||||| | ||||||||||| ||||||||  | ||||||| ||||| ||| ||||||    
T  14510415 aaatgatcatatgttgtgagtgcattgtatatttgtgtgctttctaaatccagtcattgatcatcaatcttaaatgacac 14510494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 89 - 171
Target Start/End: Complemental strand, 33836999 - 33836916
Alignment:
Q  89 aaatgatcatatgttgtgagtctattgtaaa-ttgtgtgctttttaaatccaacccttgatcaccaatcctaagtgacacgtgg 171  Q
    ||||||| |||||||||||| | |||||| | |||||| ||||| ||||| | |||||||||||||||| ||| ||||| ||||    
T  33836999 aaatgattatatgttgtgagcccattgtatacttgtgtacttttcaaatctagcccttgatcaccaatcttaaatgacatgtgg 33836916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 89 - 171
Target Start/End: Complemental strand, 42246820 - 42246737
Alignment:
Q  89 aaatgatcatatgttgtgagtctattgtaaat-tgtgtgctttttaaatccaacccttgatcaccaatcctaagtgacacgtgg 171  Q
    |||| ||||||||||||||||   ||||| || |||| ||||| ||||||||||||||||||| | ||| ||||||| ||||||    
T  42246820 aaataatcatatgttgtgagttcgttgtatatatgtgcgctttctaaatccaacccttgatcatccatcttaagtgatacgtgg 42246737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 25 - 174
Target Start/End: Complemental strand, 15268683 - 15268524
Alignment:
Q  25 aagaagatgaagattgttggtgatttttaatt------taggaagttcaagacaaacaaggaaa-gat--tataaatgatcatatgttgtgagtctattg 115  Q
    ||||||||||||||||||| ||||||||||||      || ||| ||||||||||  ||| ||| |||  || |||| ||||||||||||||||||||||    
T  15268683 aagaagatgaagattgttgatgatttttaattttaagataagaaattcaagacaa--aagaaaatgataataaaaattatcatatgttgtgagtctattg 15268586  T
Q  116 ta---aattgtgtgctttttaaatccaacccttgatcaccaatcctaagtgacacgtggcaa 174  Q
    ||      |||||| |||| |||| || ||||||||||||||||  || |||||||||||||    
T  15268585 tatccttgtgtgtgtttttaaaattcagcccttgatcaccaatcacaaatgacacgtggcaa 15268524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 89 - 175
Target Start/End: Original strand, 30223863 - 30223950
Alignment:
Q  89 aaatgatcatatgttgtgagtctattgtaaa-ttgtgtgctttttaaatccaacccttgatcaccaatcctaagtgacacgtggcaag 175  Q
    ||||||| |||||||||||||| |||||| | |||||| ||||| ||||| | |||||||||||||||| ||| ||||| ||||||||    
T  30223863 aaatgattatatgttgtgagtccattgtatacttgtgtacttttcaaatctagcccttgatcaccaatcttaaatgacatgtggcaag 30223950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 121 - 175
Target Start/End: Original strand, 22061715 - 22061769
Alignment:
Q  121 tgtgtgctttttaaatccaacccttgatcaccaatcctaagtgacacgtggcaag 175  Q
    |||||||||||||||||||||| |||||| |||||| ||| ||||||||||||||    
T  22061715 tgtgtgctttttaaatccaaccgttgatccccaatcttaaatgacacgtggcaag 22061769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 121 - 171
Target Start/End: Original strand, 35128112 - 35128162
Alignment:
Q  121 tgtgtgctttttaaatccaacccttgatcaccaatcctaagtgacacgtgg 171  Q
    |||||||||||||||||||||| ||||||||||||| ||| ||||||||||    
T  35128112 tgtgtgctttttaaatccaaccgttgatcaccaatcttaaatgacacgtgg 35128162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 89 - 175
Target Start/End: Complemental strand, 30222875 - 30222788
Alignment:
Q  89 aaatgatcatatgttgtgagtctattgtaaa-ttgtgtgctttttaaatccaacccttgatcaccaatcctaagtgacacgtggcaag 175  Q
    ||||||| |||||||||||||| |||||| | |||||| ||||| ||||| |  ||||||||||||||| ||| ||||| ||||||||    
T  30222875 aaatgattatatgttgtgagtccattgtatacttgtgtacttttcaaatctagtccttgatcaccaatcttaaatgacatgtggcaag 30222788  T

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Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 89 - 171
Target Start/End: Complemental strand, 41126469 - 41126386
Alignment:
Q  89 aaatgatcatatgttgtgagtctattgtaaa-ttgtgtgctttttaaatccaacccttgatcaccaatcctaagtgacacgtgg 171  Q
    ||||||| |||||||||||| |||||||| | |||||| ||||| ||||| | |||||||||||||||| ||| ||||| ||||    
T  41126469 aaatgattatatgttgtgagcctattgtatacttgtgtacttttcaaatctagcccttgatcaccaatcttaaatgacatgtgg 41126386  T

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Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 121 - 171
Target Start/End: Complemental strand, 22060659 - 22060609
Alignment:
Q  121 tgtgtgctttttaaatccaacccttgatcaccaatcctaagtgacacgtgg 171  Q
    |||||||||||||||||||||| ||||||||||||| ||| |||| |||||    
T  22060659 tgtgtgctttttaaatccaaccgttgatcaccaatcttaaatgactcgtgg 22060609  T

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Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 128 - 197
Target Start/End: Complemental strand, 48754185 - 48754116
Alignment:
Q  128 tttttaaatccaacccttgatcaccaatcctaagtgacacgtggcaagacttaacggttttagcaaaaaa 197  Q
    |||||||||||| || ||||||||||||| |||| ||||||||| | || ||||||| ||| ||||||||    
T  48754185 tttttaaatccagccgttgatcaccaatcttaagggacacgtggaaggagttaacggattttgcaaaaaa 48754116  T

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Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 89 - 156
Target Start/End: Original strand, 41618385 - 41618453
Alignment:
Q  89 aaatgatcatatgttgtgagtctattgtaaa-ttgtgtgctttttaaatccaacccttgatcaccaatc 156  Q
    ||||||| |||||||||||| | |||||| | |||||| ||||| ||||| ||||||||||||||||||    
T  41618385 aaatgattatatgttgtgagcccattgtatacttgtgtacttttcaaatctaacccttgatcaccaatc 41618453  T

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Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 94 - 171
Target Start/End: Complemental strand, 33458534 - 33458456
Alignment:
Q  94 atcatatgttgtgagtctattgtaaatt-gtgtgctttttaaatccaacccttgatcaccaatcctaagtgacacgtgg 171  Q
    |||||||||||| |||| |||||| ||| ||| ||||  |||||||| ||||||||||| |||| ||| ||||||||||    
T  33458534 atcatatgttgtaagtccattgtatatttgtgcgcttactaaatccagcccttgatcactaatcttaaatgacacgtgg 33458456  T

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Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 86 - 171
Target Start/End: Original strand, 36673719 - 36673805
Alignment:
Q  86 tataaatgatcatatgttgtgagtctattgta-aattgtgtgctttttaaatccaacccttgatcaccaatcctaagtgacacgtgg 171  Q
    |||||||||| |||||||||||| | |||||| | |||||| ||||| ||| | | |||||||||||||||| ||| ||||| ||||    
T  36673719 tataaatgattatatgttgtgagcccattgtatacttgtgtacttttcaaacctagcccttgatcaccaatcttaaatgacatgtgg 36673805  T

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Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 12 - 57
Target Start/End: Complemental strand, 48754298 - 48754253
Alignment:
Q  12 gagatgaagagggaagaagatgaagattgttggtgatttttaattt 57  Q
    |||||||||||| ||||||||||| |||| | ||||||||||||||    
T  48754298 gagatgaagaggaaagaagatgaatattgatagtgatttttaattt 48754253  T

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Target: scaffold0178 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0178
Description:

Target: scaffold0178; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 89 - 171
Target Start/End: Original strand, 2151 - 2234
Alignment:
Q  89 aaatgatcatatgttgtgagtctattgtaaat-tgtgtgctttttaaatccaacccttgatcaccaatcctaagtgacacgtgg 171  Q
    |||| |||||||||| |||||  |||||| || |||| ||| | ||||||||||||||||||| | ||| ||||||||||||||    
T  2151 aaataatcatatgttttgagttcattgtatatatgtgcgctctctaaatccaacccttgatcatccatcttaagtgacacgtgg 2234  T

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