View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20574_low_15 (Length: 250)

Name: NF20574_low_15
Description: NF20574
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20574_low_15
NF20574_low_15
[»] chr5 (3 HSPs)
chr5 (1-166)||(12643958-12644124)
chr5 (10-229)||(35842259-35842485)
chr5 (31-106)||(12528667-12528742)
[»] chr4 (3 HSPs)
chr4 (31-217)||(24147290-24147482)
chr4 (31-217)||(27729763-27729955)
chr4 (10-229)||(45966546-45966772)
[»] chr2 (2 HSPs)
chr2 (10-229)||(42912650-42912876)
chr2 (10-106)||(42301132-42301228)
[»] chr1 (1 HSPs)
chr1 (10-229)||(29281791-29282017)
[»] chr6 (1 HSPs)
chr6 (31-217)||(29304300-29304492)
[»] chr8 (1 HSPs)
chr8 (10-60)||(11402615-11402665)


Alignment Details
Target: chr5 (Bit Score: 151; Significance: 5e-80; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 151; E-Value: 5e-80
Query Start/End: Original strand, 1 - 166
Target Start/End: Original strand, 12643958 - 12644124
Alignment:
Q  1 caaaaactagtgagtcttatgaaattccatatagtttatttttagcaagcaatacacttttagaagaagaaaatatttggtatttggacactagatgtag 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  12643958 caaaaactagtgagtcttatgaaattccatatagtttatttttagcaagcaatacacttttagaagaagaaaatatttggtatttggacactggatgtag 12644057  T
Q  101 taatcatatgcgttgataaaaagaactgttctcttctttgaacgaaaca-taaaatctaccatggat 166  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||    
T  12644058 taatcatatgcgttgataaaaagaactgttctcttctttgaacgaaatagtaaaatctaccatggat 12644124  T

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Target: chr5; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 10 - 229
Target Start/End: Original strand, 35842259 - 35842485
Alignment:
Q  10 gtgagtcttatgaaattccatatagtttatttttagcaagcaatacacttttagaagaagaaaatatttggtatttggacactagatgtagtaatcatat 109  Q
    ||||||||| | ||| || | |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||  | ||||||||||| ||    
T  35842259 gtgagtcttctcaaaatcaacatagtttatttttagcaagcaatacactttaagaagaagaaaatatttggtatttggacaccgggtgtagtaatcacat 35842358  T
Q  110 gcgttgataaaaagaactgttctcttctttgaacgaaac-ataaaatctaccatggattttgaaaat-----aaatattcaaattttggggaaaggccaa 203  Q
    | || |  |||||||| | || |||||| || |||||||  ||||||||||| || | |||| ||||     |||||||| ||||  |||||||||||||    
T  35842359 gtgtgggaaaaaagaattattttcttctctggacgaaacggtaaaatctaccgtgaagtttggaaataattcaaatattccaattgaggggaaaggccaa 35842458  T
Q  204 attgttattagatt-aaaaatggatcg 229  Q
    |||| ||| ||||| ||| ||||||||    
T  35842459 attgctatcagattgaaagatggatcg 35842485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 31 - 106
Target Start/End: Complemental strand, 12528742 - 12528667
Alignment:
Q  31 atagtttatttttagcaagcaatacacttttagaagaagaaaatatttggtatttggacactagatgtagtaatca 106  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||  | |||||||||||    
T  12528742 atagtttatttttagcaagcaatacactttcagaagaagaaaatatttggtatttggacaccgggtgtagtaatca 12528667  T

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Target: chr4 (Bit Score: 77; Significance: 8e-36; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 31 - 217
Target Start/End: Original strand, 24147290 - 24147482
Alignment:
Q  31 atagtttatttttagcaagcaatacacttttagaagaagaaaatatttggtatttggacactagatgtagtaatcatatgcgttgataaaaagaactgtt 130  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||  | ||||||||||||||| || |  |||| ||| | ||    
T  24147290 atagtttatttttagcaagcaatacactttcagaagaagaaaatatttggtatttagacaccgggtgtagtaatcatatgtgtgggaaaaaggaattatt 24147389  T
Q  131 ctcttctttgaacgaaaca-taaaatctaccatggattttgaaaat-----aaatattcaaattttggggaaaggccaaattgttattagatt 217  Q
    ||||||| ||||||||||| ||||||||||| || | |||| ||||     |||||||| ||||  ||||||||||||||||| ||| |||||    
T  24147390 ctcttctctgaacgaaacagtaaaatctaccgtgaagtttggaaataattcaaatattccaattgaggggaaaggccaaattgctatcagatt 24147482  T

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Target: chr4; HSP #2
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 31 - 217
Target Start/End: Complemental strand, 27729955 - 27729763
Alignment:
Q  31 atagtttatttttagcaagcaatacacttttagaagaagaaaatatttggtatttggacactagatgtagtaatcatatgcgttgataaaaagaactgtt 130  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||  | ||||||||||| ||| || |  |||||||| | ||    
T  27729955 atagtttatttttagcaagcaatacactttcagaagaagaaaatatttggtatttggacaccgggtgtagtaatcacatgtgtgggaaaaaagaattatt 27729856  T
Q  131 ctcttctttgaacgaaac-ataaaatctaccatggattttgaaaat-----aaatattcaaattttggggaaaggccaaattgttattagatt 217  Q
     |||||| || |||||||  ||||||||||| || | |||| ||||     |||||||| ||||  ||||||||||||||||| ||| |||||    
T  27729855 ttcttctctggacgaaacggtaaaatctaccgtgaagtttggaaataattcaaatattccaattgaggggaaaggccaaattgctatcagatt 27729763  T

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Target: chr4; HSP #3
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 10 - 229
Target Start/End: Original strand, 45966546 - 45966772
Alignment:
Q  10 gtgagtcttatgaaattccatatagtttatttttagcaagcaatacacttttagaagaagaaaatatttggtatttggacactagatgtagtaatcatat 109  Q
    ||||||||| | ||| || | |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||  | ||||||||||| ||    
T  45966546 gtgagtcttctcaaaatcaacatagtttatttttagcaagcaatacactttcagaagaagaaaatatttggtatttggacaccgggtgtagtaatcacat 45966645  T
Q  110 gcgttgataaaaagaactgttctcttctttgaacgaaac-ataaaatctaccatggattttgaaaat-----aaatattcaaattttggggaaaggccaa 203  Q
    | || |  |||| ||| | || |||||| || |||||||  ||||||||||| || | |||| ||||     |||||||| ||||  |||||||||||||    
T  45966646 gtgtgggaaaaaggaattattttcttctctggacgaaacggtaaaatctaccgtgaagtttggaaataattcaaatattccaattgaggggaaaggccaa 45966745  T
Q  204 attgttattagatt-aaaaatggatcg 229  Q
    |||| ||| ||||| ||| ||||||||    
T  45966746 attgctatcagattgaaagatggatcg 45966772  T

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Target: chr2 (Bit Score: 75; Significance: 1e-34; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 10 - 229
Target Start/End: Complemental strand, 42912876 - 42912650
Alignment:
Q  10 gtgagtcttatgaaattccatatagtttatttttagcaagcaatacacttttagaagaagaaaatatttggtatttggacactagatgtagtaatcatat 109  Q
    ||||||||| | ||| || | |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||  ||||||||||||| ||    
T  42912876 gtgagtcttctcaaaatcaacatagtttatttttagcaagcaatacactttcagaagaagaaaatatttggtatttggacaccggatgtagtaatcacat 42912777  T
Q  110 gcgttgataaaaagaactgttctcttctttgaacgaaac-ataaaatctaccatggattttgaaaat-----aaatattcaaattttggggaaaggccaa 203  Q
    | || |  |||||||| | || |||||| || |||||||  ||||||||||| || | |||| ||||     |||||||| ||||  |||||||||||||    
T  42912776 gtgtgggaaaaaagaattattttcttctctggacgaaacggtaaaatctaccgtgaagtttggaaataattcaaatattccaattgaggggaaaggccaa 42912677  T
Q  204 attgttattagatt-aaaaatggatcg 229  Q
    |||| ||| ||||| ||| ||||||||    
T  42912676 attgctatcagattgaaagatggatcg 42912650  T

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Target: chr2; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 10 - 106
Target Start/End: Original strand, 42301132 - 42301228
Alignment:
Q  10 gtgagtcttatgaaattccatatagtttatttttagcaagcaatacacttttagaagaagaaaatatttggtatttggacactagatgtagtaatca 106  Q
    ||||||||| | ||| || | |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||  | |||||||||||    
T  42301132 gtgagtcttctcaaaatcaacatagtttatttttagcaagcaatacactttcagaagaagaaaatatttggtatttggacaccgggtgtagtaatca 42301228  T

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Target: chr1 (Bit Score: 71; Significance: 3e-32; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 10 - 229
Target Start/End: Complemental strand, 29282017 - 29281791
Alignment:
Q  10 gtgagtcttatgaaattccatatagtttatttttagcaagcaatacacttttagaagaagaaaatatttggtatttggacactagatgtagtaatcatat 109  Q
    ||||||||| | ||| || | |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||  | ||||||||||| ||    
T  29282017 gtgagtcttctcaaaatcaacatagtttatttttagcaagcaatacactttcagaagaagaaaatatttggtatttggacaccgggtgtagtaatcacat 29281918  T
Q  110 gcgttgataaaaagaactgttctcttctttgaacgaaac-ataaaatctaccatggattttgaaaat-----aaatattcaaattttggggaaaggccaa 203  Q
    | || |  |||||||| | || |||||| || |||||||  ||||||||||| || | |||| ||||     |||||||| ||||  |||||||||||||    
T  29281917 gtgtgggaaaaaagaattattttcttctctggacgaaacggtaaaatctaccgtgaagtttggaaataattcaaatattccaattgaggggaaaggccaa 29281818  T
Q  204 attgttattagatt-aaaaatggatcg 229  Q
    |||| ||| ||||| ||| ||||||||    
T  29281817 attgctatcagattgaaagatggatcg 29281791  T

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Target: chr6 (Bit Score: 61; Significance: 3e-26; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 31 - 217
Target Start/End: Original strand, 29304300 - 29304492
Alignment:
Q  31 atagtttatttttagcaagcaatacacttttagaagaagaaaatatttggtatttggacactagatgtagtaatcatatgcgttgataaaaagaactgtt 130  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||  | ||||||||||| ||| || |  |||| ||| | ||    
T  29304300 atagtttatttttagcaagcaatacactttcagaagaagaaaatatttggtatttggacaccgggtgtagtaatcacatgtgtgggaaaaaggaattatt 29304399  T
Q  131 ctcttctttgaacgaaa-cataaaatctaccatggattttgaaaat-----aaatattcaaattttggggaaaggccaaattgttattagatt 217  Q
     |||||| || ||||||   ||||||||||| || | |||| ||||     |||||||| ||||  ||||||||||||||||| ||| |||||    
T  29304400 ttcttctctggacgaaatggtaaaatctaccgtgaagtttggaaataattcaaatattccaattgaggggaaaggccaaattgctatcagatt 29304492  T

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Target: chr8 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 10 - 60
Target Start/End: Original strand, 11402615 - 11402665
Alignment:
Q  10 gtgagtcttatgaaattccatatagtttatttttagcaagcaatacacttt 60  Q
    ||||||||||||||| ||||||| ||||| |||||||||||||||||||||    
T  11402615 gtgagtcttatgaaaatccatatggtttaattttagcaagcaatacacttt 11402665  T

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