View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20574_low_16 (Length: 248)

Name: NF20574_low_16
Description: NF20574
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20574_low_16
NF20574_low_16
[»] chr5 (6 HSPs)
chr5 (76-248)||(12643597-12643769)
chr5 (76-248)||(12529245-12529417)
chr5 (76-248)||(35841605-35841777)
chr5 (17-84)||(12643503-12643570)
chr5 (45-83)||(12529447-12529485)
chr5 (45-83)||(35841537-35841575)
[»] chr6 (2 HSPs)
chr6 (76-248)||(29303625-29303797)
chr6 (45-83)||(29303557-29303595)
[»] chr4 (6 HSPs)
chr4 (76-248)||(27730458-27730630)
chr4 (76-248)||(45965892-45966064)
chr4 (138-248)||(24146694-24146804)
chr4 (45-83)||(27730660-27730698)
chr4 (45-83)||(45965824-45965862)
chr4 (45-77)||(24146564-24146596)
[»] chr1 (3 HSPs)
chr1 (76-248)||(29282499-29282671)
chr1 (45-83)||(29282701-29282739)
chr1 (45-83)||(49220696-49220734)
[»] chr2 (4 HSPs)
chr2 (76-248)||(42913358-42913530)
chr2 (76-248)||(42300478-42300650)
chr2 (45-83)||(42300410-42300448)
chr2 (45-83)||(42913560-42913598)
[»] chr8 (1 HSPs)
chr8 (137-248)||(11403139-11403250)


Alignment Details
Target: chr5 (Bit Score: 157; Significance: 1e-83; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 76 - 248
Target Start/End: Original strand, 12643597 - 12643769
Alignment:
Q  76 gtagagaatacaaaaggtataaaatgttcaattcagaaacaatatagcaatatattttttgtgttataaatcgtgtcaacaagataagggtgtgtggaaa 175  Q
    |||||||||||||||||||||||| |||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12643597 gtagagaatacaaaaggtataaaacgttcaattcagaaatagtatagcaatatattttttgtgttataaatcgtgtcaacaagataagggtgtgtggaaa 12643696  T
Q  176 agatattctgaataacaaagtggtagagaaaattctacacaccatgccgatgaagtttgatcatgtggtgact 248  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  12643697 agatattctgaataacaaagtggtagagaaaattctacacactatgccgatgaagtttgatcatgtggtgact 12643769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 76 - 248
Target Start/End: Complemental strand, 12529417 - 12529245
Alignment:
Q  76 gtagagaatacaaaaggtataaaatgttcaattcagaaacaatatagcaatatattttttgtgttataaatcgtgtcaacaagataagggtgtgtggaaa 175  Q
    ||||||||||| |||||||| |||||| || ||| |||||| |  | |||||| ||  | |||||||||||| ||||||||| || || |||| |||| |    
T  12529417 gtagagaatacgaaaggtatgaaatgtccagttctgaaacagtggatcaatattttactcgtgttataaatcttgtcaacaaaatgagagtgtatggaga 12529318  T
Q  176 agatattctgaataacaaagtggtagagaaaattctacacaccatgccgatgaagtttgatcatgtggtgact 248  Q
    ||||||||   ||| ||| ||||| ||||||||||||| ||||||||||||||| | ||||||||||||||||    
T  12529317 agatattcaagatagcaaggtggtggagaaaattctacgcaccatgccgatgaaatatgatcatgtggtgact 12529245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 76 - 248
Target Start/End: Original strand, 35841605 - 35841777
Alignment:
Q  76 gtagagaatacaaaaggtataaaatgttcaattcagaaacaatatagcaatatattttttgtgttataaatcgtgtcaacaagataagggtgtgtggaaa 175  Q
    ||||||||||| |||||||| |||||| || ||| |||||| |  | |||||| ||  | |||||||||||| ||||||||| || || |||| |||| |    
T  35841605 gtagagaatacgaaaggtatgaaatgtccagttctgaaacagtggatcaatattttactcgtgttataaatcttgtcaacaaaatgagagtgtatggaga 35841704  T
Q  176 agatattctgaataacaaagtggtagagaaaattctacacaccatgccgatgaagtttgatcatgtggtgact 248  Q
    ||||||||   ||| ||| ||||| ||||||||||||| ||||||||||||||| | ||||||||||||||||    
T  35841705 agatattcaagatagcaaggtggtggagaaaattctacgcaccatgccgatgaaatatgatcatgtggtgact 35841777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 17 - 84
Target Start/End: Original strand, 12643503 - 12643570
Alignment:
Q  17 caaaatagctaatgcatgctaaaaaggtgtgggacatattgaagctgccacataaaggagtagagaat 84  Q
    |||||||||||||| |||||||| ||||||||||||||||||||||| | ||||||||||||||||||    
T  12643503 caaaatagctaatgtatgctaaagaggtgtgggacatattgaagctgactcataaaggagtagagaat 12643570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 45 - 83
Target Start/End: Complemental strand, 12529485 - 12529447
Alignment:
Q  45 gtgggacatattgaagctgccacataaaggagtagagaa 83  Q
    |||||||||||||||| || |||||||||||||||||||    
T  12529485 gtgggacatattgaagttgtcacataaaggagtagagaa 12529447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 45 - 83
Target Start/End: Original strand, 35841537 - 35841575
Alignment:
Q  45 gtgggacatattgaagctgccacataaaggagtagagaa 83  Q
    |||||||||||||||| || |||||||||||||||||||    
T  35841537 gtgggacatattgaagttgtcacataaaggagtagagaa 35841575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 61; Significance: 3e-26; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 76 - 248
Target Start/End: Original strand, 29303625 - 29303797
Alignment:
Q  76 gtagagaatacaaaaggtataaaatgttcaattcagaaacaatatagcaatatattttttgtgttataaatcgtgtcaacaagataagggtgtgtggaaa 175  Q
    ||||||||||| |||||||| |||||| || ||| |||||| |  | |||||| ||  | |||||||||||| ||||||||| || || |||| |||| |    
T  29303625 gtagagaatacgaaaggtatgaaatgtccagttctgaaacagtggatcaatattttactcgtgttataaatcttgtcaacaaaatgagagtgtatggaga 29303724  T
Q  176 agatattctgaataacaaagtggtagagaaaattctacacaccatgccgatgaagtttgatcatgtggtgact 248  Q
    ||||||||   ||| ||| ||||| ||||||||||||| ||||||||||||||| | ||||||||||||||||    
T  29303725 agatattcaagatagcaaggtggtggagaaaattctacgcaccatgccgatgaaatatgatcatgtggtgact 29303797  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 45 - 83
Target Start/End: Original strand, 29303557 - 29303595
Alignment:
Q  45 gtgggacatattgaagctgccacataaaggagtagagaa 83  Q
    |||||||||||||||| || |||||||||||||||||||    
T  29303557 gtgggacatattgaagttgtcacataaaggagtagagaa 29303595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 61; Significance: 3e-26; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 76 - 248
Target Start/End: Complemental strand, 27730630 - 27730458
Alignment:
Q  76 gtagagaatacaaaaggtataaaatgttcaattcagaaacaatatagcaatatattttttgtgttataaatcgtgtcaacaagataagggtgtgtggaaa 175  Q
    ||||||||||| |||||||| |||||| || ||| |||||| |  | |||||| ||  | |||||||||||| ||||||||| || || |||| |||| |    
T  27730630 gtagagaatacgaaaggtatgaaatgtccagttctgaaacagtggatcaatattttactcgtgttataaatcttgtcaacaaaatgagagtgtatggaga 27730531  T
Q  176 agatattctgaataacaaagtggtagagaaaattctacacaccatgccgatgaagtttgatcatgtggtgact 248  Q
    ||||||||   ||| ||| ||||| ||||||||||||| ||||||||||||||| | ||||||||||||||||    
T  27730530 agatattcaagatagcaaggtggtggagaaaattctacgcaccatgccgatgaaatatgatcatgtggtgact 27730458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 76 - 248
Target Start/End: Original strand, 45965892 - 45966064
Alignment:
Q  76 gtagagaatacaaaaggtataaaatgttcaattcagaaacaatatagcaatatattttttgtgttataaatcgtgtcaacaagataagggtgtgtggaaa 175  Q
    ||||||||||| |||||||| |||||| || ||| |||||| |  | |||||| ||  | |||||||||||| ||||||||| || || |||| |||| |    
T  45965892 gtagagaatacgaaaggtatgaaatgtccagttctgaaacagtggatcaatattttactcgtgttataaatcttgtcaacaaaatgagagtgtatggaga 45965991  T
Q  176 agatattctgaataacaaagtggtagagaaaattctacacaccatgccgatgaagtttgatcatgtggtgact 248  Q
    ||||||||   ||| ||| ||||| ||||||||||||| ||||||||||||||| | ||||||||||||||||    
T  45965992 agatattcaagatagcaaggtggtggagaaaattctacgcaccatgccgatgaaatatgatcatgtggtgact 45966064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 138 - 248
Target Start/End: Original strand, 24146694 - 24146804
Alignment:
Q  138 gttataaatcgtgtcaacaagataagggtgtgtggaaaagatattctgaataacaaagtggtagagaaaattctacacaccatgccgatgaagtttgatc 237  Q
    |||||||||| |||||||||||| ||||||| |||| |||||||||   ||| ||| || || ||||||||| ||| ||||||||||||||| | |||||    
T  24146694 gttataaatcttgtcaacaagatgagggtgtatggagaagatattccagatagcaaggtagtggagaaaattttacgcaccatgccgatgaaatatgatc 24146793  T
Q  238 atgtggtgact 248  Q
    |||||||||||    
T  24146794 atgtggtgact 24146804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 45 - 83
Target Start/End: Complemental strand, 27730698 - 27730660
Alignment:
Q  45 gtgggacatattgaagctgccacataaaggagtagagaa 83  Q
    |||||||||||||||| || |||||||||||||||||||    
T  27730698 gtgggacatattgaagttgtcacataaaggagtagagaa 27730660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 45 - 83
Target Start/End: Original strand, 45965824 - 45965862
Alignment:
Q  45 gtgggacatattgaagctgccacataaaggagtagagaa 83  Q
    |||||||||||||||| || |||||||||||||||||||    
T  45965824 gtgggacatattgaagttgtcacataaaggagtagagaa 45965862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 45 - 77
Target Start/End: Original strand, 24146564 - 24146596
Alignment:
Q  45 gtgggacatattgaagctgccacataaaggagt 77  Q
    ||||||||||||||||||| |||||||||||||    
T  24146564 gtgggacatattgaagctgtcacataaaggagt 24146596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 61; Significance: 3e-26; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 76 - 248
Target Start/End: Complemental strand, 29282671 - 29282499
Alignment:
Q  76 gtagagaatacaaaaggtataaaatgttcaattcagaaacaatatagcaatatattttttgtgttataaatcgtgtcaacaagataagggtgtgtggaaa 175  Q
    ||||||||||| |||||||| |||||| || ||| |||||| |  | |||||| ||  | |||||||||||| ||||||||| || || |||| |||| |    
T  29282671 gtagagaatacgaaaggtatgaaatgtccagttctgaaacagtggatcaatattttactcgtgttataaatcttgtcaacaaaatgagagtgtatggaga 29282572  T
Q  176 agatattctgaataacaaagtggtagagaaaattctacacaccatgccgatgaagtttgatcatgtggtgact 248  Q
    ||||||||   ||| ||| ||||| ||||||||||||| ||||||||||||||| | ||||||||||||||||    
T  29282571 agatattcaagatagcaaggtggtggagaaaattctacgcaccatgccgatgaaatatgatcatgtggtgact 29282499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 45 - 83
Target Start/End: Complemental strand, 29282739 - 29282701
Alignment:
Q  45 gtgggacatattgaagctgccacataaaggagtagagaa 83  Q
    |||||||||||||||| || |||||||||||||||||||    
T  29282739 gtgggacatattgaagttgtcacataaaggagtagagaa 29282701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 45 - 83
Target Start/End: Complemental strand, 49220734 - 49220696
Alignment:
Q  45 gtgggacatattgaagctgccacataaaggagtagagaa 83  Q
    |||||||||||||||| || |||||||||||||||||||    
T  49220734 gtgggacatattgaagttgtcacataaaggagtagagaa 49220696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 57; Significance: 6e-24; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 76 - 248
Target Start/End: Complemental strand, 42913530 - 42913358
Alignment:
Q  76 gtagagaatacaaaaggtataaaatgttcaattcagaaacaatatagcaatatattttttgtgttataaatcgtgtcaacaagataagggtgtgtggaaa 175  Q
    ||||||||||| |||||||| |||||| || ||| |||||| |  | |||||| ||  | |||||||||||  ||||||||| || || |||| |||| |    
T  42913530 gtagagaatacgaaaggtatgaaatgtccagttctgaaacagtggatcaatattttactcgtgttataaatattgtcaacaaaatgagagtgtatggaga 42913431  T
Q  176 agatattctgaataacaaagtggtagagaaaattctacacaccatgccgatgaagtttgatcatgtggtgact 248  Q
    ||||||||   ||| ||| ||||| ||||||||||||| ||||||||||||||| | ||||||||||||||||    
T  42913430 agatattcaagatagcaaggtggtggagaaaattctacgcaccatgccgatgaaatatgatcatgtggtgact 42913358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 76 - 248
Target Start/End: Original strand, 42300478 - 42300650
Alignment:
Q  76 gtagagaatacaaaaggtataaaatgttcaattcagaaacaatatagcaatatattttttgtgttataaatcgtgtcaacaagataagggtgtgtggaaa 175  Q
    ||||||||||| |||||||| |||||| || ||| |||||| |  | |||||| ||  | ||||||| |||| ||||||||| || || |||| |||| |    
T  42300478 gtagagaatacgaaaggtatgaaatgtccagttctgaaacagtggatcaatattttactcgtgttatgaatcttgtcaacaaaatgagagtgtatggaga 42300577  T
Q  176 agatattctgaataacaaagtggtagagaaaattctacacaccatgccgatgaagtttgatcatgtggtgact 248  Q
    ||||||||   ||| ||| ||||| ||||||||||||  ||||||||||||||| | ||||||||||||||||    
T  42300578 agatattcaagatagcaaggtggtggagaaaattctatgcaccatgccgatgaaatatgatcatgtggtgact 42300650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 45 - 83
Target Start/End: Original strand, 42300410 - 42300448
Alignment:
Q  45 gtgggacatattgaagctgccacataaaggagtagagaa 83  Q
    |||||||||||||||| || |||||||||||||||||||    
T  42300410 gtgggacatattgaagttgtcacataaaggagtagagaa 42300448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 45 - 83
Target Start/End: Complemental strand, 42913598 - 42913560
Alignment:
Q  45 gtgggacatattgaagctgccacataaaggagtagagaa 83  Q
    |||||||||||||||| || |||||||||||||||||||    
T  42913598 gtgggacatattgaagttgtcacataaaggagtagagaa 42913560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 52; Significance: 6e-21; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 137 - 248
Target Start/End: Complemental strand, 11403250 - 11403139
Alignment:
Q  137 tgttataaatcgtgtcaacaagataagggtgtgtggaaaagatattctgaataacaaagtggtagagaaaattctacacaccatgccgatgaagtttgat 236  Q
    ||||||||||| ||||||||| || | ||||| |||| ||||||||| | ||| ||| ||||| ||||||||||||||||| ||| |||| ||||||| |    
T  11403250 tgttataaatcttgtcaacaaaatgacggtgtatggagaagatattccggatagcaaggtggtggagaaaattctacacactatgtcgataaagtttggt 11403151  T
Q  237 catgtggtgact 248  Q
    ||||||||||||    
T  11403150 catgtggtgact 11403139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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