View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20574_low_17 (Length: 246)
Name: NF20574_low_17
Description: NF20574
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20574_low_17 |
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Alignment Details
Target: chr4 (Bit Score: 228; Significance: 1e-126; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 1 - 228
Target Start/End: Original strand, 54586398 - 54586625
Alignment:
| Q |
1 |
atgagcttttcttaattaattgacttcagtgacatactagtagcatgaatgaaaaggaggtggacatgaatgttgttgagtgcagtggggttggtttgat |
100 |
Q |
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| T |
54586398 |
atgagcttttcttaattaattgacttcagtgacatactagtagcatgaatgaaaaggaggtggacatgaatgttgttgagtgcagtggggttggtttgat |
54586497 |
T |
|
| Q |
101 |
gttcataaatggaattgaaatattgttgaggatgacggttggtgattgtaaatatagtattaaagatttattggtgtgaatttaatgattcttcattgaa |
200 |
Q |
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| T |
54586498 |
gttcataaatggaattgaaatattgttgaggatgacggttggtgattgtaaatatagtattaaagatttattggtgtgaatttaatgattcttcattgaa |
54586597 |
T |
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| Q |
201 |
tcactgagtgagtgtgtttatcaccacc |
228 |
Q |
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|||||||||||||||||||||||||||| |
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| T |
54586598 |
tcactgagtgagtgtgtttatcaccacc |
54586625 |
T |
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