View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20574_low_19 (Length: 218)
Name: NF20574_low_19
Description: NF20574
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20574_low_19 |
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Alignment Details
Target: chr8 (Bit Score: 132; Significance: 1e-68; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 18 - 202
Target Start/End: Complemental strand, 14173468 - 14173287
Alignment:
| Q |
18 |
tgaaggacatcaaggagctgtattacaagagaaacagtgttcaccttgaggatgcagtggctaaggaaatttcaggagactacaagaagttcatccttac |
117 |
Q |
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| T |
14173468 |
tgaaggacatcaaagagctgtattataagagaaacagtgttcaccttgaggatgcagtggcaaaggaaatttcaggagactacaagaagttcatccttac |
14173369 |
T |
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| Q |
118 |
cttgttggggaagcaagattgaagtaattgatcttgttaaggcnnnnnnnnnnnntgtaataatgggatttggatatgttggttt |
202 |
Q |
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| T |
14173368 |
cttgttggggaagcaagattgaagtaattgatcttgttaaggc---atatatatttgtaataatgggatttggatatgttggttt |
14173287 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 18 - 117
Target Start/End: Complemental strand, 14151800 - 14151701
Alignment:
| Q |
18 |
tgaaggacatcaaggagctgtattacaagagaaacagtgttcaccttgaggatgcagtggctaaggaaatttcaggagactacaagaagttcatccttac |
117 |
Q |
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| T |
14151800 |
tgaaggacatcaaagagctgtattacaagagaaatagtgttcaccttgaggatacagtggctaaggaaatttctggagactacaagaagttcctccttac |
14151701 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 55; Significance: 9e-23; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 22 - 148
Target Start/End: Original strand, 5181658 - 5181784
Alignment:
| Q |
22 |
ggacatcaaggagctgtattacaagagaaacagtgttcaccttgaggatgcagtggctaaggaaatttcaggagactacaagaagttcatccttaccttg |
121 |
Q |
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| T |
5181658 |
ggacatcaaagagctgtactacaagagaaacagtgttcatcttgaagatgaagtttccaaggaaacctcaggggactacaagaagttcatcctcactctt |
5181757 |
T |
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| Q |
122 |
ttggggaagcaagattgaagtaattga |
148 |
Q |
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| T |
5181758 |
ttggggaaacatgattaaagtaattga |
5181784 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 22 - 76
Target Start/End: Original strand, 5217217 - 5217271
Alignment:
| Q |
22 |
ggacatcaaggagctgtattacaagagaaacagtgttcaccttgaggatgcagtg |
76 |
Q |
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| T |
5217217 |
ggacatcaaagagctgtcctacaagagaaacagtgttcatcttgaagatgcagtg |
5217271 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 38 - 105
Target Start/End: Original strand, 5189633 - 5189700
Alignment:
| Q |
38 |
tattacaagagaaacagtgttcaccttgaggatgcagtggctaaggaaatttcaggagactacaagaa |
105 |
Q |
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| T |
5189633 |
tattacaagagaaatagtgtccaacttgagcatgcagtggccaaaaaaacttcaggagattacaagaa |
5189700 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 38 - 105
Target Start/End: Original strand, 5246332 - 5246399
Alignment:
| Q |
38 |
tattacaagagaaacagtgttcaccttgaggatgcagtggctaaggaaatttcaggagactacaagaa |
105 |
Q |
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|||||||||||||| ||||| || |||||| |||||||||| || ||| ||||||||| |||||||| |
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| T |
5246332 |
tattacaagagaaatagtgtccaacttgagcatgcagtggccaaaaaaacttcaggagattacaagaa |
5246399 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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