View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20574_low_4 (Length: 468)
Name: NF20574_low_4
Description: NF20574
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20574_low_4 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 408; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 408; E-Value: 0
Query Start/End: Original strand, 8 - 468
Target Start/End: Complemental strand, 25380767 - 25380307
Alignment:
| Q |
8 |
gagcacagacaagtaactgaagagtttaacctgatgaacgactattaatagcatcagttattcgtaaaggatgatgttggtcttcattcttgaacttcag |
107 |
Q |
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| T |
25380767 |
gagcacagacaagtaactgaagagtttaacctgatgaatgactgttaatagcatcagttattcgtaaaggatgatgttggtcttcattcttgaacttcag |
25380668 |
T |
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| Q |
108 |
cttaatttgatgtcttgttttactagcaaaaatttgttgaatcattgtaaaatctaggccaaactccttcagagcctatgttttnnnnnnntgagtagtt |
207 |
Q |
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| T |
25380667 |
cttaatttgacgtcttgttttactagcaaaaatttgttgaatcattgtaaaatctaggccaaactccttcagagcctatgttttaaaaaaatgaatagtt |
25380568 |
T |
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| Q |
208 |
attttattaaaaatgactaatctgtgtccattcctaaatccagaaaagaaaaaattagtaatataattgtgtttaaagaaataataatgacatattgtaa |
307 |
Q |
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| T |
25380567 |
attttattaaaaatgactaatctgtctccattcctaaatccagaaaagacaaaattagtaatataattgtgtttaaagaaataataatgacatattgtaa |
25380468 |
T |
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| Q |
308 |
gaattgtgtgaagaatacctcataaaacttttcggtatcttgtttcgaccattttaccctaggtgacttgtccctgaaagaatgggaattgtataaaggg |
407 |
Q |
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| T |
25380467 |
gaattatgtgaagaatacctcataaaacttttcggtatcttgtttcgaccattttaccctaggtgacttgtccctgaaagaatgggaattgtataaaggg |
25380368 |
T |
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| Q |
408 |
acagttgacgcaaactttttactagcttgataatcctcttggtctctaagaccatcatcat |
468 |
Q |
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| T |
25380367 |
acagttgacgcaaactttttactagcttgatcatcctcttggtctctaagaccatcatcat |
25380307 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 321 - 406
Target Start/End: Original strand, 38332248 - 38332333
Alignment:
| Q |
321 |
aatacctcataaaacttttcggtatcttgtttcgaccattttaccctaggtgacttgtccctgaaagaatgggaattgtataaagg |
406 |
Q |
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| T |
38332248 |
aatacctcataaaacttttcagtatctcgtgttgaccattttcccctaggtgccttgtccatgaaagactggtaattcaataaagg |
38332333 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 321 - 388
Target Start/End: Original strand, 38340132 - 38340199
Alignment:
| Q |
321 |
aatacctcataaaacttttcggtatcttgtttcgaccattttaccctaggtgacttgtccctgaaaga |
388 |
Q |
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| T |
38340132 |
aatacctcatagaacagttcagtatcttgtttcgaccattttgccctaggtgtcttgtccttgaaaga |
38340199 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 45 - 172
Target Start/End: Original strand, 38331968 - 38332095
Alignment:
| Q |
45 |
acgactattaatagcatcagttattcgtaaaggatgatgttggtcttcattcttgaacttcagcttaatttgatgtcttgttttactagcaaaaatttgt |
144 |
Q |
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| T |
38331968 |
acgattattcatggcatcagttaacagtaaaggatgttgtcgctcttccttcttgtacttcaacttaatttgatgacgtgttttatcagggaaaagctgt |
38332067 |
T |
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| Q |
145 |
tgaatcattgtaaaatctaggccaaact |
172 |
Q |
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| T |
38332068 |
tgtatcatagtaaaatctgtgccaaact |
38332095 |
T |
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