View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20574_low_5 (Length: 467)
Name: NF20574_low_5
Description: NF20574
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20574_low_5 |
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Alignment Details
Target: chr7 (Bit Score: 224; Significance: 1e-123; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 1 - 251
Target Start/End: Complemental strand, 24529941 - 24529690
Alignment:
| Q |
1 |
gatagttggagacaaggagctgcaccaaaattatatagatgactttgttgattatgtggagctacatattcttacctctaagcattagcactaattaggt |
100 |
Q |
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| T |
24529941 |
gatagttggagacaaggagctgcaccaaaaatatatagatgactttgttgattatgtggagctacatattcttacctctaagcattagcactaattaggt |
24529842 |
T |
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| Q |
101 |
ctttatttcatcttgtgttttcatattatctatggtttagagtgatttaatgcaataatcttcaaagtcccttggaatttcgatgttcatttgcta-ttt |
199 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||| |
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| T |
24529841 |
ctttatttcatcttgtgttttcatattatctatggtttagagtgatttaatgcaataatcttcaaagtccattggaatttcgatgttcatttgctatttt |
24529742 |
T |
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| Q |
200 |
ctttttgctatcatctaggatagactcaaagcattagcacaaaggttgtttt |
251 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||| |||| |
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| T |
24529741 |
atttttgctatcatctaggatagactcaaagtattagcacaaaggttttttt |
24529690 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 167; E-Value: 3e-89
Query Start/End: Original strand, 232 - 406
Target Start/End: Complemental strand, 24529668 - 24529494
Alignment:
| Q |
232 |
attagcacaaaggttgttttgttgtcattgatgtaatgtcatcctcgacagattttatagtaatttttgtgttggtctttttatgtgatgcattattaaa |
331 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24529668 |
attagcacaaaggttgttttgttgtcattgatgtaatgtcatcctcgacagattttatagtaatttttgtgttggtctttttatgtgatgcattattaaa |
24529569 |
T |
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| Q |
332 |
atagaaattgatgtttgttactttgctccatgagttgatttggttgtgtttgaaacaagtattatattgataggt |
406 |
Q |
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| T |
24529568 |
atagaaattgatgtttgttactttgctccatgacttgatttggttgtgtttgaaacaagtattgtattgataggt |
24529494 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 1 - 92
Target Start/End: Original strand, 24543942 - 24544033
Alignment:
| Q |
1 |
gatagttggagacaaggagctgcaccaaaattatatagatgactttgttgattatgtggagctacatattcttacctctaagcattagcact |
92 |
Q |
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|||| ||||||||||||||||||||||||| ||| | |||||||||||||||||| ||||||| ||||| | || ||||||||||||||| |
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| T |
24543942 |
gatatttggagacaaggagctgcaccaaaagtatttggatgactttgttgattatatggagctccatatctctgccactaagcattagcact |
24544033 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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