View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20574_low_6 (Length: 405)
Name: NF20574_low_6
Description: NF20574
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20574_low_6 |
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Alignment Details
Target: chr4 (Bit Score: 334; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 11 - 389
Target Start/End: Complemental strand, 25380315 - 25379937
Alignment:
| Q |
11 |
catcatcatctgaactaaaagtctcctcttcattattagcaccagcatcatgaaagaaatccccaccactgcagataaatattttaaaatacaaatataa |
110 |
Q |
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| T |
25380315 |
catcatcatctgaactaaaagtctcctcttcattattagcaccggcatcatgaaagaaatccccaccactgcagataaatattttaaaatacaaatataa |
25380216 |
T |
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| Q |
111 |
atctatttacagtacagcacgtggcttaaaagtgacggtaacaacaatcactggatgatggtaaagaagatgtttggaaccacgtaagatgtgcaatgaa |
210 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25380215 |
atctatttacagtacagcacgtggctaaaaagtgacggtaacaacaatcactggatgatggtaaagaagatgtttggaaccacgtaagatgtgcaatgaa |
25380116 |
T |
|
| Q |
211 |
ttgcagtaaataaagcaacaaagatgtttactgcgctatacgcagattttcaacatagatatatattttcatattnnnnnnntataattgacaaggaaat |
310 |
Q |
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||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||| || |||||||||||||||||| |
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| T |
25380115 |
ttgcagtaaataaagcaacaaagatgtttactgtgctatacgcagattttcaacacagatatatattttcattttaaaaaaatataattgacaaggaaat |
25380016 |
T |
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| Q |
311 |
aaatcgtgaaagctaacaaagggtagaagattctacctaactcaatcacatacaacgaatatacacatatatcttaact |
389 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25380015 |
aaatcgcgaaagctaacaaagggtagaagattctacctaactcaatcacatacaacgaatatacacatatatcttaact |
25379937 |
T |
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