View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20574_low_7 (Length: 393)

Name: NF20574_low_7
Description: NF20574
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20574_low_7
NF20574_low_7
[»] chr2 (1 HSPs)
chr2 (104-393)||(8766135-8766430)


Alignment Details
Target: chr2 (Bit Score: 249; Significance: 1e-138; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 104 - 393
Target Start/End: Original strand, 8766135 - 8766430
Alignment:
Q  104 actttatagtgacttgagtgacaacaagatccatgatcaaattccgtatcagttgccaccaaatcttactagcctgtatgtagtaataataatgttcacc 203  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8766135 actttatagtgacttgagtgacaacaagatccatgatcaaattccgtatcagttgccaccaaatcttactagcctgtatgtagtaataataatgttcacc 8766234  T
Q  204 tacaatcacttcctttt------ttcagtttttgatcaattttagtttgttgctttatctgaaatgttaatttactcttcaattgtgtcaatcagaaatc 297  Q
    |||||| ||||||||||      |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8766235 tacaatgacttccttttttttttttcagtttttgatcaattttagtttgttgctttatctgaaatgttaatttactcttcaattgtgtcaatcagaaatc 8766334  T
Q  298 tggcacgaaataacttaacttgaaatcttccttattccttttctgccatggtttcactcacttatctgttagttgttgttggatagtgaacaattt 393  Q
    | ||| |||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  8766335 ttgcaagaaataacttaactggaaatcttccgtattccttttctgccatggtttcactcacttatctgtaagttgttgttggatagtgaacaattt 8766430  T

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