View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20574_low_8 (Length: 390)
Name: NF20574_low_8
Description: NF20574
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20574_low_8 |
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Alignment Details
Target: chr1 (Bit Score: 313; Significance: 1e-176; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 18 - 371
Target Start/End: Original strand, 2509646 - 2509995
Alignment:
| Q |
18 |
ataaaagccaccacaactagcatccgagcataattaagaatggaaagttagataaattcattgtattgatgagtttggacagtgaatttatagtttttaa |
117 |
Q |
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| T |
2509646 |
ataaaagccaccacaactagcatccgagcataa----gaatggaaagttagataaattcattgtattgatgagtttggacagtgaatttatagtttttaa |
2509741 |
T |
|
| Q |
118 |
aaactctgatatgatgtaagcagccgactgaaaatgacttagaagagcatacaagaaaagcatagggcataattccatcaaaatctgtgtttataaacaa |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2509742 |
aaactctgatatgatgtaagcagccgactgaaaatgacttagaagagcatacaagaaaagcatagggcataattccatcaaaatctgtgtttataaacaa |
2509841 |
T |
|
| Q |
218 |
acgaataattcttgattatttgatatgcctggtttagattaaaagctagaattatctgacctatataaactttgaaactgttttttaagtggtaatccaa |
317 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2509842 |
acgaataattcttgattatttgatatgcctggtttaaattaaaagctagaattatctgacctatataaactttgaaactgttttttaagtggtaatccaa |
2509941 |
T |
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| Q |
318 |
ttaccttaataattgcttttaagagattgatttctcctaaagggatgttctttc |
371 |
Q |
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||||||||||||||||| || |||||||||| |||||||||||||||||||| |
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| T |
2509942 |
ttaccttaataattgctaccaaaagattgatttgtcctaaagggatgttctttc |
2509995 |
T |
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