View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20575_high_7 (Length: 413)
Name: NF20575_high_7
Description: NF20575
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20575_high_7 |
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Alignment Details
Target: chr1 (Bit Score: 308; Significance: 1e-173; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 24 - 402
Target Start/End: Original strand, 20431495 - 20431874
Alignment:
| Q |
24 |
tgtaattggccttcaaggaaaaatggaagctttaggttcatgcttatattcaacaagaatagacacatcatgttctagggatccaagaatcaaaggattg |
123 |
Q |
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|||||||||| |||||||||||| |||||| ||||||||||||||||||||||| |||||||||||||||| || ||||||||||||||||||||||| |
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| T |
20431495 |
tgtaattggctatcaaggaaaaattcaagcttcaggttcatgcttatattcaacaaaaatagacacatcatgtgcttgggatccaagaatcaaaggattg |
20431594 |
T |
|
| Q |
124 |
ttcttctatgagtcaacaacaattttccctgcttca-gaatttggagactttatcaacgatgtgaagaaattaagaaacataaatccacaaaatttttgt |
222 |
Q |
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|||| |||||||||||||||||||||| ||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
20431595 |
ttctactatgagtcaacaacaattttcactgcttcttgaatttggagactttatcaactatgtgaagaaattaagaaacataaatccacaaaatttttgt |
20431694 |
T |
|
| Q |
223 |
ggcatagatatctataatggaattttgatacgttacattaaagccttggaagtatatctaggacaatcagaagactctgtagtgattgatttcaactatt |
322 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20431695 |
ggcatagatatttataatggaattttgatacgttacattaaagcctcggaagtatatctaggacaatcagaagactctgtagtgattgatttcaactatt |
20431794 |
T |
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| Q |
323 |
atcattcaaatgatcaatttcctgctagattaaaccaagatgtgtgggagaaattggaacagattgccttttcaagtata |
402 |
Q |
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| T |
20431795 |
atcgtgcaaatgatcaatttcctgctagattaaaccaagatgtgtgggagaaattggaacagattgccttttcaagtata |
20431874 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 24 - 394
Target Start/End: Original strand, 10017895 - 10018261
Alignment:
| Q |
24 |
tgtaattggccttcaaggaaaaatggaagctttaggttcatgcttatattcaacaagaatagacacatcatgttctagggatccaagaatcaaaggattg |
123 |
Q |
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| T |
10017895 |
tgtaattggctatcaaggaaaaatgcaagcttcaggttcatgcttatattcaacaagaatagacacatcatgtgcttgggatccaggaatcaaaggattg |
10017994 |
T |
|
| Q |
124 |
ttcttctatgagtcaacaacaattttccctgcttcagaatttggagactttatcaacgatgtgaagaaattaagaaacataaatccacaaaatttttgtg |
223 |
Q |
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|||||||| ||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||| |
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| T |
10017995 |
ttcttctaggagtcaacaacaactttccctgctttagaatttggagactttatcaacgatgtgaagaaattaagagatataaatccacaaaatttttgtg |
10018094 |
T |
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| Q |
224 |
gcatagatatctataatggaattttgatacgttacattaaagccttggaagtatatctaggacaatcagaagactctgtagtgattgatttcaactatta |
323 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||| ||||| |||||||| ||||||| |||||||||||||||||||||||||| |
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| T |
10018095 |
gcatcgatatctataatggaattttgatacgttacattaaagcctcaaaagta----taggacaaccagaagagtctgtagtgattgatttcaactatta |
10018190 |
T |
|
| Q |
324 |
tcattcaaatgatcaatttcctgctagattaaaccaagatgtgtgggagaaattggaacagattgcctttt |
394 |
Q |
| |
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|| | |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||| |
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|
| T |
10018191 |
tcttgcaaatgatcaatttcctgctagattaaaccaagatgtgtgggagaaattgtaacagattgtctttt |
10018261 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 253; E-Value: 1e-140
Query Start/End: Original strand, 24 - 388
Target Start/End: Complemental strand, 8714670 - 8714306
Alignment:
| Q |
24 |
tgtaattggccttcaaggaaaaatggaagctttaggttcatgcttatattcaacaagaatagacacatcatgttctagggatccaagaatcaaaggattg |
123 |
Q |
| |
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|||||||||| |||||| |||||| | ||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
8714670 |
tgtaattggctatcaaggtaaaatgctaacttcaggttcatgcttatattcaacaagaatagacacatcatgtgaatgggatccaagaatcaaaggattg |
8714571 |
T |
|
| Q |
124 |
ttcttctatgagtcaacaacaattttccctgcttcagaatttggagactttatcaacgatgtgaagaaattaagaaacataaatccacaaaatttttgtg |
223 |
Q |
| |
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|||||||||||||||||| ||||||||||||||||| |||||||||||||||||| |||||||||||| ||||| ||||||||||| ||| |||||||| |
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| T |
8714570 |
ttcttctatgagtcaacatcaattttccctgcttcaaaatttggagactttatcattgatgtgaagaaactaagagacataaatccagaaattttttgtg |
8714471 |
T |
|
| Q |
224 |
gcatagatatctataatggaattttgatacgttacattaaagccttggaagtatatctaggacaatcagaagactctgtagtgattgatttcaactatta |
323 |
Q |
| |
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||||||| |||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8714470 |
gcatagacatctataatggaattttgatacattacattaaagccttggaagcatatctaggacaatcagaagactctgtagtgattgatttcaactatta |
8714371 |
T |
|
| Q |
324 |
tcattcaaatgatcaatttcctgctagattaaaccaagatgtgtgggagaaattggaacagattg |
388 |
Q |
| |
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|| | |||||||||||||| || |||||||||||||||||||||||||| |||||||||| |||| |
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| T |
8714370 |
tcgtgcaaatgatcaatttactcctagattaaaccaagatgtgtgggaggaattggaacaaattg |
8714306 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 243; E-Value: 1e-134
Query Start/End: Original strand, 24 - 394
Target Start/End: Complemental strand, 8733490 - 8733120
Alignment:
| Q |
24 |
tgtaattggccttcaaggaaaaatggaagctttaggttcatgcttatattcaacaagaatagacacatcatgttctagggatccaagaatcaaaggattg |
123 |
Q |
| |
|
|||||||||| |||||| |||||| || ||| |||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||| |
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| T |
8733490 |
tgtaattggctatcaaggcaaaatgcaaacttcaggttcatgcttatattcaacaagaatagacacatcatgtgcatgggatccaagaatcaaaggattg |
8733391 |
T |
|
| Q |
124 |
ttcttctatgagtcaacaacaattttccctgcttcagaatttggagactttatcaacgatgtgaagaaattaagaaacataaatccacaaaatttttgtg |
223 |
Q |
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| |||||||||||||||| ||||||||||||||||| | ||||||||||||||||| |||||||||||| ||||| |||||||||||||||||||||||| |
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| T |
8733390 |
tccttctatgagtcaacagcaattttccctgcttcaaagtttggagactttatcaatgatgtgaagaaactaagagacataaatccacaaaatttttgtg |
8733291 |
T |
|
| Q |
224 |
gcatagatatctataatggaattttgatacgttacattaaagccttggaagtatatctaggacaatcagaagactctgtagtgattgatttcaactatta |
323 |
Q |
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||||||| | ||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
8733290 |
gcatagacaactataatggaattttgatacgttacattaaagcctcagaagcatatctaggacaatcagaagactctgtagttattgatttcaactatta |
8733191 |
T |
|
| Q |
324 |
tcattcaaatgatcaatttcctgctagattaaaccaagatgtgtgggagaaattggaacagattgcctttt |
394 |
Q |
| |
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|| ||||||| |||||| || |||||||||||||||| ||||||||| |||||||||| ||||| |||| |
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| T |
8733190 |
tcgagcaaatgaccaatttactcctagattaaaccaagacgtgtgggaggaattggaacaaattgcatttt |
8733120 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 200 - 268
Target Start/End: Complemental strand, 8711686 - 8711619
Alignment:
| Q |
200 |
acataaatccacaaaatttttgtggcatagatatctataatggaattttgatacgttacattaaagcct |
268 |
Q |
| |
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|||||||||||||| ||||| || ||||||| | |||||||||||||||||| ||||||||||||||| |
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| T |
8711686 |
acataaatccacaatatttt-gtagcatagaaaattataatggaattttgatatgttacattaaagcct |
8711619 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 185 - 257
Target Start/End: Complemental strand, 8731617 - 8731545
Alignment:
| Q |
185 |
tgaagaaattaagaaacataaatccacaaaatttttgtggcatagatatctataatggaattttgatacgtta |
257 |
Q |
| |
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|||||||| | ||| |||||||||||||||| | |||||||||||| | |||||| |||||||||||| |||| |
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| T |
8731617 |
tgaagaaaattagagacataaatccacaaaaatattgtggcatagaaagctataacggaattttgatatgtta |
8731545 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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