View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20575_low_1 (Length: 628)
Name: NF20575_low_1
Description: NF20575
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20575_low_1 |
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Alignment Details
Target: chr8 (Bit Score: 560; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 560; E-Value: 0
Query Start/End: Original strand, 18 - 618
Target Start/End: Complemental strand, 32236387 - 32235788
Alignment:
| Q |
18 |
caatgcaatcataatatgccccccttgaaaaagtgtaggcattgtgattcacactctatacaaaacagtggagagtgaagttgaaggctttggtgaaccc |
117 |
Q |
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| T |
32236387 |
caatgcaatcataatatgccccccttgaaaaagtgtaggcattgtgattcacactctatacaaaacagtggagagtgaagttgaaggctttggtgaaccc |
32236288 |
T |
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| Q |
118 |
taatttttatgnnnnnnnncttcttacttttcatgtaaagctagctacatatatcaatttgaattaatatagttgaaatttcataaccaacaacataaaa |
217 |
Q |
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||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32236287 |
taatttttatgttttttt-cttcttacttttcatgtaaagctagctacatatatcaatttgaattaatatagttgaaatttcataaccaacaacataaaa |
32236189 |
T |
|
| Q |
218 |
ctaaaagggtataagtaaatccatataggacccatcaagcaaaacaaggatcttcttttgcagttccgctgtgtttttgtcctccattttctcagaccca |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32236188 |
ctaaaagggtataagtaaatccatataggacccatcaagcaaaacaaggatcttcttttgcagttccgctgtgtttttgtcctccattttctcagaccca |
32236089 |
T |
|
| Q |
318 |
atccatagtggaacatactaattaagagggcacaggggagaacattgtagagccaacacgcccaagggttacctcttggcagttgatcacttttatgatg |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
32236088 |
atccatagtggaacatactaattaagagggcacaggggagaacattgtagagccaacacgcccaagtgttacctcttggcagttgatcacttttatgatg |
32235989 |
T |
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| Q |
418 |
atgattagctgatcacaacatgaatcacttagacgtcaaagattttttatctcatttctccttaaaacctatctataaaaaggcctggcatcataggaaa |
517 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
32235988 |
atgattagctgatcacaacatgaatcacttagacgtcaaagagtttttatctcatttctccttaaaacctatctataaaaaggcctggcatcaaaggaaa |
32235889 |
T |
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| Q |
518 |
agtacaatgttaagagtctcatgtttgacgagatatgacatgaagataggtttataagtttcaacaattcatatctcataaagttaattttgtaagaata |
617 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32235888 |
agtacaatgttaagagtctcatgtttgacgagatatgacatgaagataggtttataagtttcaacaattcatatctcataaagttaattttgtaagaata |
32235789 |
T |
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