View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20575_low_10 (Length: 308)

Name: NF20575_low_10
Description: NF20575
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20575_low_10
NF20575_low_10
[»] chr4 (2 HSPs)
chr4 (1-231)||(26573476-26573705)
chr4 (230-295)||(26574123-26574188)
[»] chr2 (19 HSPs)
chr2 (230-298)||(10334888-10334956)
chr2 (230-298)||(10370990-10371058)
chr2 (230-295)||(8574418-8574483)
chr2 (228-291)||(10340609-10340672)
chr2 (1-230)||(10339973-10340214)
chr2 (1-140)||(10350757-10350901)
chr2 (24-165)||(10370439-10370585)
chr2 (232-295)||(9287760-9287823)
chr2 (230-295)||(10346863-10346928)
chr2 (81-165)||(10346306-10346390)
chr2 (230-295)||(11425340-11425405)
chr2 (232-295)||(9285144-9285207)
chr2 (230-291)||(10351330-10351391)
chr2 (230-284)||(9318714-9318768)
chr2 (230-294)||(9291125-9291191)
chr2 (230-280)||(9069022-9069072)
chr2 (238-284)||(9315244-9315290)
chr2 (238-284)||(9326586-9326632)
chr2 (230-295)||(9273220-9273285)
[»] chr3 (1 HSPs)
chr3 (230-298)||(37461562-37461630)
[»] chr8 (1 HSPs)
chr8 (243-295)||(41968355-41968408)
[»] scaffold0667 (1 HSPs)
scaffold0667 (238-284)||(1726-1772)


Alignment Details
Target: chr4 (Bit Score: 148; Significance: 4e-78; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 148; E-Value: 4e-78
Query Start/End: Original strand, 1 - 231
Target Start/End: Original strand, 26573476 - 26573705
Alignment:
Q  1 ctaatgtttatcacagtattatctttcaacttgattttccaattctcaataaaaactacaaaatgaaattnnnnnnnnnngttccaaaatcatgcaacac 100  Q
    |||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||          ||||||||||||||||||||    
T  26573476 ctaatgcttatcacagtat-atctttcaacttgattttccaattctcaataaaaactacaaaatgaaattaaaaaaaaatgttccaaaatcatgcaacac 26573574  T
Q  101 acatttccaaattcctaaaactataaaagtatcatacttatatatggctcaaaatgattttaaaatnnnnnnncactataattgcatgatcatttcaaaa 200  Q
    |||||||||||||||||||||||||| ||||||||||||| |||||||| ||||||||||||||||       ||||||||||| | |||||||||||||    
T  26573575 acatttccaaattcctaaaactataacagtatcatacttacatatggctaaaaatgattttaaaataaaaaaacactataattgtacgatcatttcaaaa 26573674  T
Q  201 caggtatctcatttaaaacagtatggaatac 231  Q
    |||||||||||||||||||||||||||||||    
T  26573675 caggtatctcatttaaaacagtatggaatac 26573705  T

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Target: chr4; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 230 - 295
Target Start/End: Original strand, 26574123 - 26574188
Alignment:
Q  230 accaaggtgactaattccatcacaagaaacaactggagcatcctgtttcagctgcacttcacaggt 295  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26574123 accaaggtgactaattccatcacaagaaacaactggagcatcctgtttcagctgcacttcacaggt 26574188  T

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Target: chr2 (Bit Score: 65; Significance: 1e-28; HSPs: 19)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 230 - 298
Target Start/End: Original strand, 10334888 - 10334956
Alignment:
Q  230 accaaggtgactaattccatcacaagaaacaactggagcatcctgtttcagctgcacttcacaggttct 298  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  10334888 accaaggtgactaattccatcacaagaaacaactggagcatcctgtttcagctgcacttcacacgttct 10334956  T

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Target: chr2; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 230 - 298
Target Start/End: Original strand, 10370990 - 10371058
Alignment:
Q  230 accaaggtgactaattccatcacaagaaacaactggagcatcctgtttcagctgcacttcacaggttct 298  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  10370990 accaaggtgactaattccatcacaagaaacaactggagcatcctgtttcagctgcacttcacacgttct 10371058  T

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Target: chr2; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 230 - 295
Target Start/End: Complemental strand, 8574483 - 8574418
Alignment:
Q  230 accaaggtgactaattccatcacaagaaacaactggagcatcctgtttcagctgcacttcacaggt 295  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||    
T  8574483 accaaggtgactaattccatcacaagaaacaacttgagcatcctgtttcagctgcacatcacaggt 8574418  T

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Target: chr2; HSP #4
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 228 - 291
Target Start/End: Original strand, 10340609 - 10340672
Alignment:
Q  228 ataccaaggtgactaattccatcacaagaaacaactggagcatcctgtttcagctgcacttcac 291  Q
    ||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  10340609 ataccgaggtgactaattccatcataagaaacaactggagcatcctgtttcagctgcacttcac 10340672  T

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Target: chr2; HSP #5
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 1 - 230
Target Start/End: Original strand, 10339973 - 10340214
Alignment:
Q  1 ctaatgtttatcacagtattatctttcaacttgattttccaattctcaataaaaactacaaaatgaaatt--------nnnnnnnnnngttccaaaatca 92  Q
    |||||| |||||||||||||||||||||||||||| |||| ||||  |||||||||||||||||||||||                  ||| ||||||||    
T  10339973 ctaatgcttatcacagtattatctttcaacttgatcttcctattcaaaataaaaactacaaaatgaaattaaaaaaaaaaaaaaaaatgtttcaaaatca 10340072  T
Q  93 tgcaacacacatttccaaattcctaaaactataaaagtatcatacttatatatggctcaaaatgattttaaaatnnnnnnncactataattgcatgatca 192  Q
    ||||  |||||||||||||||||||||||||||| |||||||| |||| || | ||| |||||||||| ||||        || |||||| | ||||||     
T  10340073 tgca--acacatttccaaattcctaaaactataacagtatcattcttacattttgctaaaaatgatttaaaaaagaaaacacaatataatcgtatgatcc 10340170  T
Q  193 tttcaaaacagg------tatctcatttaaaacagtatggaata 230  Q
    ||||||||||||      |||||||||||||| |||||||||||    
T  10340171 tttcaaaacaggtttcgctatctcatttaaaatagtatggaata 10340214  T

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Target: chr2; HSP #6
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 140
Target Start/End: Original strand, 10350757 - 10350901
Alignment:
Q  1 ctaatgtttatcacagtattatctttcaacttgattttccaattct-caataaaaactacaaaatgaaatt---nnnnnnnnnngttccaaaatcatgca 96  Q
    |||||| ||||||||||||| |||||||||||||||||||||||||  || ||||||||||||||||||||             ||||||||||||||||    
T  10350757 ctaatgcttatcacagtattctctttcaacttgattttccaattctaaaaaaaaaactacaaaatgaaattaaaaaaaaaaaaagttccaaaatcatgca 10350856  T
Q  97 acacacatttccaaattcctaaaacta-taaaagtatcatactta 140  Q
    ||||||||||| |||||| |||||||| ||| |||||||| ||||    
T  10350857 acacacatttctaaattcttaaaactattaacagtatcattctta 10350901  T

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Target: chr2; HSP #7
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 24 - 165
Target Start/End: Original strand, 10370439 - 10370585
Alignment:
Q  24 tttcaacttgattttccaattctcaataaaaactacaaaatgaaattnnnnnnnnnn-----gttccaaaatcatgcaacacacatttccaaattcctaa 118  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||               |||||||||||||| ||||||||||| |||||||||||    
T  10370439 tttcaacttgattttcctattctcaataaaaactacaaaatgaaattaaaaaaaaaaataatgttccaaaatcatgtaacacacatttacaaattcctaa 10370538  T
Q  119 aactataaaagtatcatacttatatatggctcaaaatgattttaaaa 165  Q
    ||||| || |||||||| ||||  | ||||| |||||||||| ||||    
T  10370539 aactagaacagtatcattcttaggtttggctaaaaatgatttaaaaa 10370585  T

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Target: chr2; HSP #8
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 232 - 295
Target Start/End: Original strand, 9287760 - 9287823
Alignment:
Q  232 caaggtgactaattccatcacaagaaacaactggagcatcctgtttcagctgcacttcacaggt 295  Q
    |||||||||||| ||||||||||||||||||| |||||||||||||||||||||| ||||||||    
T  9287760 caaggtgactaactccatcacaagaaacaacttgagcatcctgtttcagctgcacatcacaggt 9287823  T

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Target: chr2; HSP #9
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 230 - 295
Target Start/End: Original strand, 10346863 - 10346928
Alignment:
Q  230 accaaggtgactaattccatcacaagaaacaactggagcatcctgtttcagctgcacttcacaggt 295  Q
    ||||||||||||||||||||||||||||||||| || || || |||||||||||||||||||||||    
T  10346863 accaaggtgactaattccatcacaagaaacaaccggtgcttcatgtttcagctgcacttcacaggt 10346928  T

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Target: chr2; HSP #10
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 81 - 165
Target Start/End: Original strand, 10346306 - 10346390
Alignment:
Q  81 gttccaaaatcatgcaacacacatttccaaattcctaaaactataaaagtatcatacttatatatggctcaaaatgattttaaaa 165  Q
    |||||||||||||||| ||||||||||||||||| ||||||||||| |||||||| |||| || ||| | |||||| ||||||||    
T  10346306 gttccaaaatcatgcagcacacatttccaaattcataaaactataacagtatcattcttacatttgggtaaaaatgcttttaaaa 10346390  T

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Target: chr2; HSP #11
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 230 - 295
Target Start/End: Complemental strand, 11425405 - 11425340
Alignment:
Q  230 accaaggtgactaattccatcacaagaaacaactggagcatcctgtttcagctgcacttcacaggt 295  Q
    |||||||||| ||||||| ||||||||||||||| ||| |||||||||||||||||| ||||||||    
T  11425405 accaaggtgattaattccttcacaagaaacaactcgagtatcctgtttcagctgcacatcacaggt 11425340  T

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Target: chr2; HSP #12
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 232 - 295
Target Start/End: Complemental strand, 9285207 - 9285144
Alignment:
Q  232 caaggtgactaattccatcacaagaaacaactggagcatcctgtttcagctgcacttcacaggt 295  Q
    |||| ||||||||||||||||||||||| ||| ||||||| |||||||||||||| ||||||||    
T  9285207 caagatgactaattccatcacaagaaactacttgagcatcatgtttcagctgcacatcacaggt 9285144  T

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Target: chr2; HSP #13
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 230 - 291
Target Start/End: Original strand, 10351330 - 10351391
Alignment:
Q  230 accaaggtgactaattccatcacaagaaacaactggagcatcctgtttcagctgcacttcac 291  Q
    ||||||||||  ||||||||||||||||||||| | |||||||| |||||||||||||||||    
T  10351330 accaaggtgagcaattccatcacaagaaacaacagaagcatcctatttcagctgcacttcac 10351391  T

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Target: chr2; HSP #14
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 230 - 284
Target Start/End: Original strand, 9318714 - 9318768
Alignment:
Q  230 accaaggtgactaattccatcacaagaaacaactggagcatcctgtttcagctgc 284  Q
    ||||||||  |||||||||||||||||||||||| ||| ||||||||||||||||    
T  9318714 accaaggtttctaattccatcacaagaaacaacttgagtatcctgtttcagctgc 9318768  T

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Target: chr2; HSP #15
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 230 - 294
Target Start/End: Original strand, 9291125 - 9291191
Alignment:
Q  230 accaaggtgactaattccatcacaagaaacaac--tggagcatcctgtttcagctgcacttcacagg 294  Q
    |||||||| |||||||||||||||| |||||||  | ||| |||||||||||||||||| |||||||    
T  9291125 accaaggtaactaattccatcacaacaaacaacttttgagaatcctgtttcagctgcacatcacagg 9291191  T

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Target: chr2; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 230 - 280
Target Start/End: Complemental strand, 9069072 - 9069022
Alignment:
Q  230 accaaggtgactaattccatcacaagaaacaactggagcatcctgtttcag 280  Q
    |||||||||||||||| ||||||||||| ||||| ||||||| ||||||||    
T  9069072 accaaggtgactaattacatcacaagaagcaacttgagcatcatgtttcag 9069022  T

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Target: chr2; HSP #17
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 238 - 284
Target Start/End: Original strand, 9315244 - 9315290
Alignment:
Q  238 gactaattccatcacaagaaacaactggagcatcctgtttcagctgc 284  Q
    |||||||||||||||||||||||| | ||||||| ||||||||||||    
T  9315244 gactaattccatcacaagaaacaagttgagcatcatgtttcagctgc 9315290  T

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Target: chr2; HSP #18
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 238 - 284
Target Start/End: Original strand, 9326586 - 9326632
Alignment:
Q  238 gactaattccatcacaagaaacaactggagcatcctgtttcagctgc 284  Q
    |||||||||||||||||||||||||| ||| ||||||| ||||||||    
T  9326586 gactaattccatcacaagaaacaacttgagtatcctgtatcagctgc 9326632  T

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Target: chr2; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 230 - 295
Target Start/End: Original strand, 9273220 - 9273285
Alignment:
Q  230 accaaggtgactaattccatcacaagaaacaactggagcatcctgtttcagctgcacttcacaggt 295  Q
    ||||||| |||||||||||| ||||||| ||||| ||||||| ||||  |||||||  ||||||||    
T  9273220 accaaggagactaattccataacaagaagcaacttgagcatcgtgttaaagctgcatatcacaggt 9273285  T

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Target: chr3 (Bit Score: 49; Significance: 5e-19; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 230 - 298
Target Start/End: Original strand, 37461562 - 37461630
Alignment:
Q  230 accaaggtgactaattccatcacaagaaacaactggagcatcctgtttcagctgcacttcacaggttct 298  Q
    ||||||| |||||||||||||||||||||||||| ||||| |||||||||||||||| | |||||||||    
T  37461562 accaaggagactaattccatcacaagaaacaacttgagcaccctgtttcagctgcacattacaggttct 37461630  T

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Target: chr8 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 243 - 295
Target Start/End: Complemental strand, 41968408 - 41968355
Alignment:
Q  243 attccatcacaagaaacaactggagcatcct-gtttcagctgcacttcacaggt 295  Q
    ||||||||| ||||||||||| ||||||||| ||||||||||||| ||||||||    
T  41968408 attccatcagaagaaacaacttgagcatcctggtttcagctgcacatcacaggt 41968355  T

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Target: scaffold0667 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0667
Description:

Target: scaffold0667; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 238 - 284
Target Start/End: Original strand, 1726 - 1772
Alignment:
Q  238 gactaattccatcacaagaaacaactggagcatcctgtttcagctgc 284  Q
    |||||||||||| ||||||||||||| ||| || |||||||||||||    
T  1726 gactaattccattacaagaaacaacttgagaattctgtttcagctgc 1772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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