View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20575_low_12 (Length: 240)
Name: NF20575_low_12
Description: NF20575
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20575_low_12 |
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Alignment Details
Target: chr6 (Bit Score: 219; Significance: 1e-120; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 30956821 - 30956599
Alignment:
| Q |
1 |
cttgtaaccttgcattctattttgtatttcattctttgcattgaaaaaacataaagctgagcaaattttggtgatttcatgacataggcagtaaactcct |
100 |
Q |
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| T |
30956821 |
cttgtaaccttgcattctattttgtatttcattctttgcattgaaaaaacataaagctgagcaaattttggtgatttcatgacataggcagtaaactcct |
30956722 |
T |
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| Q |
101 |
aaatgggtgacgtgattgaccttgaattgatgtcctaatcttgctaccatgagtggcaaaaatgaatacttcaaagaaaatcatggaataaaataaatgg |
200 |
Q |
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| T |
30956721 |
aaatgggtgacgtgattgaccttgaattgatgtcctaatcttgctaccatgagtggcaaaaatgaatacttcaaagaaaatcatggaataaaataaatag |
30956622 |
T |
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| Q |
201 |
taacaattacggcagtttggaac |
223 |
Q |
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||||||||||||||||||||||| |
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| T |
30956621 |
taacaattacggcagtttggaac |
30956599 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 30946582 - 30946363
Alignment:
| Q |
1 |
cttgtaaccttgcattctattttgtatttcattctttgcattgaaaaaacataaagctgagcaaattttggtgatttcatgacataggcagtaaactcct |
100 |
Q |
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| T |
30946582 |
cttgtaacctttaattctattttgtatttcattcttggtattgtaaatg--taaa-ctgagcaaattttggttttgtcatgacataggcactaaactcct |
30946486 |
T |
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| Q |
101 |
aaatgggtgacgtgattgaccttgaattgatgtcctaatcttgctaccatgagtggcaaaaatgaatacttcaaagaaaatcatggaataaaataaatgg |
200 |
Q |
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| T |
30946485 |
aactggttgacatgattgaccttaaattgttgtccttatcttgctaccctaagtggtaaaaatgaatacttaaaagaaattatttcaataaaataaatgg |
30946386 |
T |
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| Q |
201 |
taacaattacggcagtttggaac |
223 |
Q |
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|||||||| ||||||||||||| |
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| T |
30946385 |
caacaattatggcagtttggaac |
30946363 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 3 - 128
Target Start/End: Complemental strand, 30931884 - 30931760
Alignment:
| Q |
3 |
tgtaaccttgcattctattttgtatttcattctttgcattgaaaaaacataaagctgagcaaattttggtgatt-tcatgacataggcagtaaactccta |
101 |
Q |
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|||||||||||| |||||||||||||||||| || |||| ||| |||||| |||||||||||| |||| || ||||||||||| ||||||||| |
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| T |
30931884 |
tgtaaccttgcagcttattttgtatttcattctatgtattgtaaatg--taaagcaaagcaaattttggcgattgtccagacataggcagcaaactccta |
30931787 |
T |
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| Q |
102 |
aatgggtgacgtgattgaccttgaatt |
128 |
Q |
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| T |
30931786 |
actgcatgacatgatttaccttgaatt |
30931760 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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