View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20575_low_3 (Length: 545)
Name: NF20575_low_3
Description: NF20575
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20575_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 472; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 472; E-Value: 0
Query Start/End: Original strand, 11 - 530
Target Start/End: Original strand, 50340305 - 50340824
Alignment:
| Q |
11 |
attctcgagtttcaaggcactcttgccatggaaatacaaaagctggaaattgtggcttcaagttggacgtacgttttttccatcccatcacagaaataaa |
110 |
Q |
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||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
50340305 |
attctcgcgttttgaggcactcttgccatggaaatacaaaagctggaaattgtggcttcaagttggacgtacgttttttccatcccatcatagaaataaa |
50340404 |
T |
|
| Q |
111 |
catagccttaaacactttttaaataactcagagttcaatcttctggttaaataaacttttaaaaaagttttgacctcaacaaatttgaacccagtttaaa |
210 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50340405 |
catagccttaaacactttttaaataactcagagttcaatcttctggttaaataaacttttaaaaaagttttgacctcaacaaatttgaacccagtttaaa |
50340504 |
T |
|
| Q |
211 |
tttgtccaactttagtattagttctcaagtaattatacaccagtgtaaataacaatctcagtatgttccaaatataaattttgtttaattatttcgtaac |
310 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50340505 |
tttgtccaactttagtattagttctcaagtaattatacaccagtgtaaataacaatctcagtatgttccaaatataaattttgtttaattatttcgtaac |
50340604 |
T |
|
| Q |
311 |
tttattgtattggtagaatatatttgaacaattaattagaagacccttaatggagnnnnnnnncttatatgaaactttaattgaaattcaagaattcagc |
410 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||| |
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| T |
50340605 |
tttattgtattggtagaatatatttgaacaattaattagaagacccttaatggagttttttttcttatatgaaactttaattgaaattcgagaattcagc |
50340704 |
T |
|
| Q |
411 |
ccatattttattttatctacatattattatggttatgatccgagtaacacacacattataaaatgctaaagcaacacagcagaatttatttacttagtaa |
510 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
50340705 |
ccatattttattttatctacatattattatggttatgatccgagtaacacacacattataaaatgctaaagcaacaaagcagaatttatttacttagtaa |
50340804 |
T |
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| Q |
511 |
taattatattgagttgcctc |
530 |
Q |
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|||||||||||||||||||| |
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| T |
50340805 |
taattatattgagttgcctc |
50340824 |
T |
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