View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20575_low_4 (Length: 527)
Name: NF20575_low_4
Description: NF20575
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20575_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 241; Significance: 1e-133; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 220 - 516
Target Start/End: Original strand, 22869045 - 22869341
Alignment:
| Q |
220 |
aagagagcagataaatgtaaagctccaagcaaacagaaaaaccaatgtctagagtgtatacatttcaattcaatattacaacaggaataaattatatagt |
319 |
Q |
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| T |
22869045 |
aagagagcagataaatgaatagctccaaccaaacagaaaaaccaatgtctagagtgtatacatttcaattcaatattacaacaggaataaattatatagt |
22869144 |
T |
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| Q |
320 |
tcagtattatgatttttaacaacagtgacaatcaaagccttttactgctggatggggtcagcaacaagaatcaaagattgtgtagcaaagggttcnnnnn |
419 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22869145 |
tcagtattatgagttttaacaacagtgacaatcaaagccttttactgctggatggggtcagcaacaagaatcaaagattgtgtagcaaagggttcaaaaa |
22869244 |
T |
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| Q |
420 |
nnnggttttgcattatcaatagcggacgcattataaagaatcaaagatctcctttacaattttttatcgcttacaatgtcctgctatacctgatatt |
516 |
Q |
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||||| ||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
22869245 |
aaaggtttcgcattatcaatagcggatgcattataaagaatcaaagatcacctttacaattttttatcgcttacaatgtcctactatacctgatatt |
22869341 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 147; E-Value: 3e-77
Query Start/End: Original strand, 218 - 396
Target Start/End: Original strand, 22837684 - 22837862
Alignment:
| Q |
218 |
agaagagagcagataaatgtaaagctccaagcaaacagaaaaaccaatgtctagagtgtatacatttcaattcaatattacaacaggaataaattatata |
317 |
Q |
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||||||||||| ||||||||| |||||||||||||| | |||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
22837684 |
agaagagagcaaataaatgtacagctccaagcaaactgcaaaaccaatgtctagactgtatacatttcaattcaatattacaacaggaataaattctata |
22837783 |
T |
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| Q |
318 |
gttcagtattatgatttttaacaacagtgacaatcaaagccttttactgctggatggggtcagcaacaagaatcaaaga |
396 |
Q |
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| T |
22837784 |
gttcagtattatcagttttaacaacagtgacaatcaaagccttttactgctggatggggtcagcaacaagaatcaaaga |
22837862 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 125; E-Value: 4e-64
Query Start/End: Original strand, 19 - 151
Target Start/End: Original strand, 22868847 - 22868979
Alignment:
| Q |
19 |
cctgcttccctttaatgcgctgaataaaaccggttaaaggcttgctcatttgcagattgtatggtccacctttaacatcactatttatgtattgagcaac |
118 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22868847 |
cctgcttccctttaatgcgctgaataaaaccagttaaaggcttgctcatttgcagattgtatggtccacctttaacatcactatttatgtattgagcaac |
22868946 |
T |
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| Q |
119 |
ctcgaattgaagcatgagataagcgtcctagac |
151 |
Q |
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| T |
22868947 |
ctcgaattgaagcataagataagcgtcctagac |
22868979 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 21 - 140
Target Start/End: Original strand, 22837485 - 22837604
Alignment:
| Q |
21 |
tgcttccctttaatgcgctgaataaaaccggttaaaggcttgctcatttgcagattgtatggtccacctttaacatcactatttatgtattgagcaacct |
120 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22837485 |
tgcttccctttaatgcgctgaataaaaccggttaaagacttgctcatttgaggattgtatggtccacctttaacatcactatttatgtattgagcaacct |
22837584 |
T |
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| Q |
121 |
cgaattgaagcatgagataa |
140 |
Q |
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||||||||||||| |||||| |
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| T |
22837585 |
cgaattgaagcataagataa |
22837604 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 397 - 516
Target Start/End: Original strand, 22837911 - 22838030
Alignment:
| Q |
397 |
ttgtgtagcaaagggttcnnnnnnnnggttttgcattatcaatagcggacgcattataaagaatcaaagatctcctttacaattttttatcgcttacaat |
496 |
Q |
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|||||||||||||||||| ||||| ||||||||||||| ||||||||||| |||||||||||||| |||||||||||||||||| |||||| | |
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| T |
22837911 |
ttgtgtagcaaagggttcagaaaaaaggtttcgcattatcaatagtggacgcattatgaagaatcaaagatcacctttacaattttttatcacttacagt |
22838010 |
T |
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| Q |
497 |
gtcctgctatacctgatatt |
516 |
Q |
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||||| |||||||||||||| |
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| T |
22838011 |
gtcctactatacctgatatt |
22838030 |
T |
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