View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20575_low_5 (Length: 446)

Name: NF20575_low_5
Description: NF20575
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20575_low_5
NF20575_low_5
[»] chr6 (7 HSPs)
chr6 (7-446)||(30956885-30957324)
chr6 (113-314)||(30962704-30962906)
chr6 (115-314)||(30932360-30932560)
chr6 (15-106)||(30966358-30966450)
chr6 (391-446)||(30946669-30946724)
chr6 (23-106)||(30936066-30936150)
chr6 (341-393)||(30946773-30946827)


Alignment Details
Target: chr6 (Bit Score: 432; Significance: 0; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 432; E-Value: 0
Query Start/End: Original strand, 7 - 446
Target Start/End: Complemental strand, 30957324 - 30956885
Alignment:
Q  7 tcgaagaatatacacattaatacaaaaagttattctaatagtacttcaagtatcaaaattgcaaacacatccaagtttagtcggtttggttcttgaatat 106  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30957324 tcgaataatatacacattaatacaaaaagttattctaatagtacttcaagtatcaaaattgcaaacacatccaagtttagtcggtttggttcttgaatat 30957225  T
Q  107 cttgatcggcaattttaatgctaggcaccgagtgtgtcactcttgcccaatttgcaatgataaattcttaaactatgaattacagctgttaggggatcaa 206  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30957224 cttgatcggcaattttaatgctaggcaccgagtgtgtcactcttgcccaatttgcaatgataaattcttaaactatgaattacagctgttaggggatcaa 30957125  T
Q  207 agtcttgcaatttcttttaatcaaaatgtagttgaaatgataacaacattgacagagttcgcatttcagagagtgcaatgtcccaaggaactcaggccaa 306  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30957124 agtcttgcaatttcttttaatcaaaatgtagttgaaatgataacaacattgacagagttcgcatttcagagagtgcaatgtcccaaggaactcaggccaa 30957025  T
Q  307 ccatgaaaacagtgacagagttggcatttcaaaatatagtaatatgattcatattagtgattttatcacatgttttgagccacttgtagacatcttgcaa 406  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30957024 ccatgaaaacagtgacagagttagcatttcaaaatatagtaatatgattcatattagtgattttatcacatgttttgagccacttgtagacatcttgcaa 30956925  T
Q  407 gaaactcgtctgttcattgaagtttaccactttgagttta 446  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  30956924 gaaactcgtctgttcattgaagtttaccactttgagttta 30956885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 113 - 314
Target Start/End: Complemental strand, 30962906 - 30962704
Alignment:
Q  113 cggcaattttaatgctaggcaccgagtgtgtcactcttgcccaatttgcaatga-taaattcttaaactatgaattacagctgttaggggatcaaagtct 211  Q
    |||||| |||||||| |||||| ||   |||||||||||| ||||||||||||| |||| |||||||| | ||||||||| || ||| ||||||||||||    
T  30962906 cggcaagtttaatgcaaggcacggaacatgtcactcttgctcaatttgcaatgagtaaaatcttaaacaaggaattacagatgctagtggatcaaagtct 30962807  T
Q  212 tgcaatttcttttaatcaaaatgtagttgaaatgataacaacattgacagagttcgcatttcagagagtgcaatgtcccaaggaactcaggccaaccatg 311  Q
    |  ||||||||||||| |||||||||| ||||||||||||||| |||| ||||| ||||||||| | ||||| |||||||||||||||||||||||||||    
T  30962806 tcaaatttcttttaataaaaatgtagtcgaaatgataacaacagtgactgagttagcatttcagtgtgtgcagtgtcccaaggaactcaggccaaccatg 30962707  T
Q  312 aaa 314  Q
    |||    
T  30962706 aaa 30962704  T

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Target: chr6; HSP #3
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 115 - 314
Target Start/End: Complemental strand, 30932560 - 30932360
Alignment:
Q  115 gcaattttaatgctaggcaccgagtgtgtcactcttgcccaatttgcaatga-taaattcttaaactatgaattacagctgttaggggatcaaagtcttg 213  Q
    |||| |||||||| |||||||||| ||||| |||||||| |||||||| ||| |||| |||||||| | |||||||||||| ||| ||| |||||||||     
T  30932560 gcaagtttaatgcaaggcaccgagcgtgtcgctcttgccgaatttgcattgagtaaaatcttaaacaaggaattacagctgctagtggaccaaagtcttc 30932461  T
Q  214 caatttcttttaatcaaaatgtagttgaaatgataacaacattgacagagttcgcatttcagagagtgcaatgtcccaaggaactcaggccaaccatgaa 313  Q
     ||||||||||||  |||||||||| ||||||||||||||  |||| ||||| ||||||||| | ||||| |||||||||||||||||||||||||||||    
T  30932460 aaatttcttttaacaaaaatgtagtggaaatgataacaacggtgactgagttagcatttcagtgtgtgcagtgtcccaaggaactcaggccaaccatgaa 30932361  T
Q  314 a 314  Q
    |    
T  30932360 a 30932360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 15 - 106
Target Start/End: Complemental strand, 30966450 - 30966358
Alignment:
Q  15 tatacacattaatacaaaaagttattctaatagtacttcaa-gtatcaaaattgcaaacacatccaagtttagtcggtttggttcttgaatat 106  Q
    |||||||||||||||| |||| | ||||||||||| ||||| ||||||||||||||||||||||||| |||||||||||| ||||||||||||    
T  30966450 tatacacattaatacagaaagatgttctaatagtaattcaatgtatcaaaattgcaaacacatccaactttagtcggttttgttcttgaatat 30966358  T

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Target: chr6; HSP #5
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 391 - 446
Target Start/End: Complemental strand, 30946724 - 30946669
Alignment:
Q  391 tgtagacatcttgcaagaaactcgtctgttcattgaagtttaccactttgagttta 446  Q
    |||||||||||||||||||||| |||| ||| ||||||||||||||||||||||||    
T  30946724 tgtagacatcttgcaagaaacttgtctattctttgaagtttaccactttgagttta 30946669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 23 - 106
Target Start/End: Complemental strand, 30936150 - 30936066
Alignment:
Q  23 ttaatacaaaaagttattctaatagtacttcaa-gtatcaaaattgcaaacacatccaagtttagtcggtttggttcttgaatat 106  Q
    |||||||| |||  ||||||||| |||||| || ||||||| ||||||||||||||||| ||||||| ||||||||||| |||||    
T  30936150 ttaatacacaaaaatattctaatcgtacttgaatgtatcaacattgcaaacacatccaaatttagtcagtttggttcttaaatat 30936066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 341 - 393
Target Start/End: Complemental strand, 30946827 - 30946773
Alignment:
Q  341 tatagtaatatgattcatattagtgattttatcaca--tgttttgagccacttgt 393  Q
    |||||||||| ||||||| |||||||||||| ||||  |||||||||||||||||    
T  30946827 tatagtaatacgattcattttagtgattttaccacatctgttttgagccacttgt 30946773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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