View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20575_low_6 (Length: 432)
Name: NF20575_low_6
Description: NF20575
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20575_low_6 |
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Alignment Details
Target: chr8 (Bit Score: 151; Significance: 9e-80; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 151; E-Value: 9e-80
Query Start/End: Original strand, 262 - 416
Target Start/End: Original strand, 43745697 - 43745851
Alignment:
| Q |
262 |
tcaaattgataaaaaggccgaccaaatatctaacgaaagaaattagagtcagaccaaatgaaatcatgaatactatccaacaaaggatcaagaatgtacc |
361 |
Q |
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| T |
43745697 |
tcaaattgataaaaaggccgaccaaatatctaacgaaagaaattagagtcagaccaaatgaaatcatgaatacgatccaacaaaggatcaagaatgtacc |
43745796 |
T |
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| Q |
362 |
aaagatggtgttttgagggttggtggcggtttgattcttagcagcgtcacctatc |
416 |
Q |
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| T |
43745797 |
aaagatggtgttttgagggttggtggcggtttgattcttagcagcgtcacctatc |
43745851 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 106; E-Value: 7e-53
Query Start/End: Original strand, 14 - 155
Target Start/End: Original strand, 43745451 - 43745592
Alignment:
| Q |
14 |
atgcatatcattaattatatatagtcattcaattgtccaactaacataccaatgcaatgatacaataataacannnnnnnnaagaaaacaaaagacacga |
113 |
Q |
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| T |
43745451 |
atgcatatcattaattatatatagtcattcaattgtccaactaacataccaatgcaatgatacaataataacattttttttaagcaaacaaaagacacga |
43745550 |
T |
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| Q |
114 |
ggtagccgaatgggaaagtcatcacaactaggttggcaccgc |
155 |
Q |
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| T |
43745551 |
ggtagccgaatgggaaagtaatcacaactagggtggcaccgc |
43745592 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 343 - 398
Target Start/End: Original strand, 43430952 - 43431007
Alignment:
| Q |
343 |
aaaggatcaagaatgtaccaaagatggtgttttgagggttggtggcggtttgattc |
398 |
Q |
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| T |
43430952 |
aaaggattaaaaatgtaccaaagacggtgttttgagggttggtggcggtttgattc |
43431007 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 354 - 412
Target Start/End: Complemental strand, 42554324 - 42554266
Alignment:
| Q |
354 |
aatgtaccaaagatggtgttttgagggttggtggcggtttgattcttagcagcgtcacc |
412 |
Q |
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| T |
42554324 |
aatgtaccaaagacagtgttttgggggttggtggcggtttgatccttagcagcatcacc |
42554266 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 25 - 86
Target Start/End: Complemental strand, 42554945 - 42554884
Alignment:
| Q |
25 |
taattatatatagtcattcaattgtccaactaacataccaatgcaatgatacaataataaca |
86 |
Q |
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| T |
42554945 |
taattatatatgaccattcaattgtccaactagcatatcaatgcaatgaaacaataataaca |
42554884 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 357 - 412
Target Start/End: Complemental strand, 10493135 - 10493080
Alignment:
| Q |
357 |
gtaccaaagatggtgttttgagggttggtggcggtttgattcttagcagcgtcacc |
412 |
Q |
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| T |
10493135 |
gtaccaaagacggtgttttcagggttagtggcagattgattcttagcagcatcacc |
10493080 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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