View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20576_high_4 (Length: 299)

Name: NF20576_high_4
Description: NF20576
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20576_high_4
NF20576_high_4
[»] chr2 (11 HSPs)
chr2 (39-282)||(16288252-16288494)
chr2 (121-282)||(16270767-16270919)
chr2 (163-242)||(16215397-16215476)
chr2 (186-242)||(16176486-16176542)
chr2 (161-228)||(16206985-16207052)
chr2 (186-242)||(16146134-16146190)
chr2 (186-242)||(16154766-16154822)
chr2 (185-242)||(16211192-16211249)
chr2 (13-77)||(16270660-16270725)
chr2 (195-242)||(16222819-16222866)
chr2 (195-228)||(16180720-16180753)


Alignment Details
Target: chr2 (Bit Score: 163; Significance: 4e-87; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 163; E-Value: 4e-87
Query Start/End: Original strand, 39 - 282
Target Start/End: Original strand, 16288252 - 16288494
Alignment:
Q  39 caacattacatatataatattgaggataatcaatacaca--ggttttggcacaagagtgaatccttactatttggacnnnnnnngggtctatatttaaat 136  Q
    |||||||||||||||||||||||||| ||||||||||||  ||||||||||||||||||||||||||||||||||||       ||||||||||||||||    
T  16288252 caacattacatatataatattgaggagaatcaatacacataggttttggcacaagagtgaatccttactatttggactttttttgggtctatatttaaat 16288351  T
Q  137 gcccctaaacataatacatagattactaaacttgcaaagaatttgtgtttaatggcgtaccaaatgtcaaaatctttcagtttctttgccatctttgttt 236  Q
    || |||||||||| ||||  || || ||||||| |||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  16288352 gcacctaaacatattaca--gaatattaaactttcaaagaattt-tgtttaatggggtaccaaatgtcaaaatctttcagtttctttgccatctttgttt 16288448  T
Q  237 tagttgcctcaggtaagcctcttcaccattgtatcttgcttaatat 282  Q
    |||||||| |||||||||||||||||||||||||||||||||||||    
T  16288449 tagttgccgcaggtaagcctcttcaccattgtatcttgcttaatat 16288494  T

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Target: chr2; HSP #2
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 121 - 282
Target Start/End: Original strand, 16270767 - 16270919
Alignment:
Q  121 gggtctatatttaaatgcccctaaacataatacatagattactaaacttgcaaagaatttgtgtttaatggcgtaccaaatgtcaaaatctttcagtttc 220  Q
    ||||| ||| |||||||||||||||| |||| |||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||             
T  16270767 gggtccatagttaaatgcccctaaacgtaatgcatagattaccaaacttgcaaagaatttgtgtttaatggcgtcccaaatgtcaaaatct--------- 16270857  T
Q  221 tttgccatctttgttttagttgcctcaggtaagcctcttcaccattgtatcttgcttaatat 282  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||    
T  16270858 tttgccatctttgttttagttgcctcgggtaagcctcttcaccattgtgtcttgcttaatat 16270919  T

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Target: chr2; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 163 - 242
Target Start/End: Original strand, 16215397 - 16215476
Alignment:
Q  163 taaacttgcaaagaatttgtgtttaatggcgtaccaaatgtcaaaatctttcagtttctttgccatctttgttttagttg 242  Q
    ||||||||||||||||   | ||||| |||| |||||||||||||||||||||||||||||||||| || | ||||||||    
T  16215397 taaacttgcaaagaatcattttttaacggcgaaccaaatgtcaaaatctttcagtttctttgccatattggctttagttg 16215476  T

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Target: chr2; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 186 - 242
Target Start/End: Original strand, 16176486 - 16176542
Alignment:
Q  186 taatggcgtaccaaatgtcaaaatctttcagtttctttgccatctttgttttagttg 242  Q
    ||||| || |||||||||||| |||||||||||||||||||||||| ||||||||||    
T  16176486 taatgacgaaccaaatgtcaacatctttcagtttctttgccatcttggttttagttg 16176542  T

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Target: chr2; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 161 - 228
Target Start/End: Original strand, 16206985 - 16207052
Alignment:
Q  161 actaaacttgcaaagaatttgtgtttaatggcgtaccaaatgtcaaaatctttcagtttctttgccat 228  Q
    ||||||||||||||||||   || |||| |||  ||||||||||||||||||||||||||||||||||    
T  16206985 actaaacttgcaaagaatcattgcttaagggcaaaccaaatgtcaaaatctttcagtttctttgccat 16207052  T

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Target: chr2; HSP #6
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 186 - 242
Target Start/End: Original strand, 16146134 - 16146190
Alignment:
Q  186 taatggcgtaccaaatgtcaaaatctttcagtttctttgccatctttgttttagttg 242  Q
    ||||| || |||||||||||| ||||||||||||||||| |||||| ||||||||||    
T  16146134 taatgacgaaccaaatgtcaacatctttcagtttctttgtcatcttggttttagttg 16146190  T

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Target: chr2; HSP #7
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 186 - 242
Target Start/End: Original strand, 16154766 - 16154822
Alignment:
Q  186 taatggcgtaccaaatgtcaaaatctttcagtttctttgccatctttgttttagttg 242  Q
    ||||| || |||||||||||| |||||||| ||||||||||||||| ||||||||||    
T  16154766 taatgacgaaccaaatgtcaacatctttcaatttctttgccatcttggttttagttg 16154822  T

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Target: chr2; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 185 - 242
Target Start/End: Original strand, 16211192 - 16211249
Alignment:
Q  185 ttaatggcgtaccaaatgtcaaaatctttcagtttctttgccatctttgttttagttg 242  Q
    |||| |||| |||||||||||||||||||| ||||||||||||| || | ||||||||    
T  16211192 ttaaaggcgaaccaaatgtcaaaatctttcggtttctttgccatattggctttagttg 16211249  T

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Target: chr2; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 13 - 77
Target Start/End: Original strand, 16270660 - 16270725
Alignment:
Q  13 aatattgtaaagaaaagtatatcaaacaacat-tacatatataatattgaggataatcaatacaca 77  Q
    |||||||| || ||||||||||||||||| |  |||||||||||||||||| ||||||| ||||||    
T  16270660 aatattgttaaaaaaagtatatcaaacaaaaaatacatatataatattgagcataatcagtacaca 16270725  T

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Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 195 - 242
Target Start/End: Original strand, 16222819 - 16222866
Alignment:
Q  195 accaaatgtcaaaatctttcagtttctttgccatctttgttttagttg 242  Q
    |||||||||||||||||||| ||||||||||||| || | ||||||||    
T  16222819 accaaatgtcaaaatctttcggtttctttgccatattggctttagttg 16222866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 195 - 228
Target Start/End: Original strand, 16180720 - 16180753
Alignment:
Q  195 accaaatgtcaaaatctttcagtttctttgccat 228  Q
    |||||||||||||||||||| |||||||||||||    
T  16180720 accaaatgtcaaaatctttcggtttctttgccat 16180753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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