View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20576_high_8 (Length: 249)
Name: NF20576_high_8
Description: NF20576
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20576_high_8 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 217; Significance: 1e-119; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 18 - 249
Target Start/End: Complemental strand, 54916565 - 54916336
Alignment:
| Q |
18 |
agcttcttccaaaagactctagataatttcattttcttttaaaacaaaggatcggatgcaattactatgaatttacaacgtgaacatgcaaacatctttt |
117 |
Q |
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| T |
54916565 |
agcttcttccaaaagactctagataatttcattttcttttaaaacaaaggatcggatgcaattactatgaatttacaacgtgaacatgcaaacatctttt |
54916466 |
T |
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| Q |
118 |
acacacacagactcaacgaccgacaatctcattgatctaataattttggattcaaattttttccatatgttaattgcatatatagttaataatttgaagt |
217 |
Q |
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| T |
54916465 |
acacaca--gactcaacgaccgacaatctcattgatctaataattttggattcaaattttttccatatgttaattgcatatatagttaataatttgaagt |
54916368 |
T |
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| Q |
218 |
tcgttatcttccctttaatatccactcttttt |
249 |
Q |
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| T |
54916367 |
tcgttatcttccctttaatatccactattttt |
54916336 |
T |
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