View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20576_low_1 (Length: 537)
Name: NF20576_low_1
Description: NF20576
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20576_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 255; Significance: 1e-141; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 255; E-Value: 1e-141
Query Start/End: Original strand, 33 - 332
Target Start/End: Complemental strand, 34742676 - 34742375
Alignment:
| Q |
33 |
catattgaagaaaatgcggttctgaagcttgtttgcatggtaatgagcaaaatgaactc---ataagtgaatgtttgcttaaagttactaatctatccnn |
129 |
Q |
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| T |
34742676 |
catattgaagaaaatgcggttctgaagcttgtttgcatggtaatgagcaaaatgaactctgaataagtgaatgtttgcttaaagttactaatctatcctt |
34742577 |
T |
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| Q |
130 |
nnnnnaaagttaatctccttgcctaaatatttcattagtgccctttattgtaattaactaaataggtggaagtttcctcaatcacggtcacattctctct |
229 |
Q |
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| T |
34742576 |
tttt-aaagttaatctccttgcctaaatatttcattagtgccctttattgtaattaactaaataggtggaagtttcctcaatcacggtcacattctctct |
34742478 |
T |
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| Q |
230 |
attttccacttgacatacgcacggtttcacaatagaaaggtttgttttcacaacttcaactgtaattctgcaaagtttccaacaatccgaagaacagaag |
329 |
Q |
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| T |
34742477 |
attttccacttgacaaacgcacggtttcacaatagaaaggtttgttttcacaacttcaactgcaattctgcaaagtttccaacaatccgaagaacagaag |
34742378 |
T |
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| Q |
330 |
gtt |
332 |
Q |
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||| |
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| T |
34742377 |
gtt |
34742375 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 331 - 523
Target Start/End: Complemental strand, 34742313 - 34742121
Alignment:
| Q |
331 |
tttttggtgattttattagttaattctttgtttctattagattcatccatcttttcttgctacactgttagattcatcaatttcttcaattcttatatac |
430 |
Q |
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| T |
34742313 |
tttttggtgattttattagttaattctttgtttctattaaattcatccatcttttcttgctacactgttagattcatcaatttcttcaattcttatatac |
34742214 |
T |
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| Q |
431 |
tttgtttctatatgaccatgttctcaatatctattatattcatcaatttcatgtttcgttgtgcttatatttggctattttggattgttattt |
523 |
Q |
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| T |
34742213 |
tttgtttctatatgaccatgttctcaatatctattatattcatcaatttcatgtttcgttgtgcttatatttggctattttggattgtgattt |
34742121 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 413 - 458
Target Start/End: Complemental strand, 16152630 - 16152585
Alignment:
| Q |
413 |
tcttcaattcttatatactttgtttctatatgaccatgttctcaat |
458 |
Q |
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| T |
16152630 |
tcttcaattcttatatactttgtttctataagaccaggttctcaat |
16152585 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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