View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20576_low_2 (Length: 537)

Name: NF20576_low_2
Description: NF20576
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20576_low_2
NF20576_low_2
[»] chr1 (5 HSPs)
chr1 (25-426)||(34742712-34743113)
chr1 (417-523)||(34742121-34742227)
chr1 (1-44)||(1240596-1240639)
chr1 (4-43)||(969658-969698)
chr1 (1-41)||(49762375-49762415)
[»] chr8 (1 HSPs)
chr8 (122-199)||(24262683-24262760)
[»] chr5 (1 HSPs)
chr5 (417-458)||(16152585-16152626)
[»] chr4 (2 HSPs)
chr4 (4-44)||(23870213-23870253)
chr4 (4-44)||(32554536-32554576)
[»] chr6 (3 HSPs)
chr6 (6-44)||(21954405-21954443)
chr6 (4-40)||(33344988-33345024)
chr6 (4-40)||(35121874-35121910)
[»] chr3 (1 HSPs)
chr3 (4-45)||(27538707-27538748)


Alignment Details
Target: chr1 (Bit Score: 347; Significance: 0; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 347; E-Value: 0
Query Start/End: Original strand, 25 - 426
Target Start/End: Original strand, 34742712 - 34743113
Alignment:
Q  25 caccaaaaatcttaggaccgacccggataaagtgacaagggaacagtgcttcacacagtggtattaatgttctactttacttaaataaaggatattgtta 124  Q
    |||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  34742712 caccaaaaatcttaggaccgaccctgataaagtgacaagggaagagtgcttcacacagtggtattaatgttctactttacttaaatataggatattgtta 34742811  T
Q  125 gactattagtaattgagttcttcatttcttttttcctttcaacttggcaagagatcaaaagttgtagaatttggtcttgaatggctttatgctcatcact 224  Q
    |||||||||||||||||||||||||||||||| | ||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  34742812 gactattagtaattgagttcttcatttcttttcttctttctacttggcaagagatcaaaagttgtagaatttggtcttgaatagctttatgctcatcact 34742911  T
Q  225 aatggtggaggtctaccatcataagctaattgttgcactaagnnnnnnnnnctttctaaattccgattagttttgaagtacatttaacttaggcatgatt 324  Q
    ||||||||||||||||||||||||||||||||||||||||||         |||||||||||||||||||||||||||||||||||||||||||||||||    
T  34742912 aatggtggaggtctaccatcataagctaattgttgcactaagcttttttttctttctaaattccgattagttttgaagtacatttaacttaggcatgatt 34743011  T
Q  325 gtagttttggtgctctatttttactattttgtagaagtgattcgccaatttgataatctgacaatttggtccctccatcaacattatatgtacaattctt 424  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34743012 gtagttttggtgctctatttttactattttgtagaagtgattcgccaatttgataatctgacaatttggtccctccatcaacattatatgtacaattctt 34743111  T
Q  425 at 426  Q
    ||    
T  34743112 at 34743113  T

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Target: chr1; HSP #2
Raw Score: 103; E-Value: 5e-51
Query Start/End: Original strand, 417 - 523
Target Start/End: Complemental strand, 34742227 - 34742121
Alignment:
Q  417 caattcttatatactttgtttctatatgaccatgttctcaatatctattatattcatcaatttcatgtttcgttgtgcttatatttggctattttggatt 516  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34742227 caattcttatatactttgtttctatatgaccatgttctcaatatctattatattcatcaatttcatgtttcgttgtgcttatatttggctattttggatt 34742128  T
Q  517 gttattt 523  Q
    || ||||    
T  34742127 gtgattt 34742121  T

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Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 1240596 - 1240639
Alignment:
Q  1 acaaatttattgtttcgtctaaggcaccaaaaatcttaggaccg 44  Q
    |||| |||||||||||||| |||||||||| |||||||||||||    
T  1240596 acaattttattgtttcgtccaaggcaccaagaatcttaggaccg 1240639  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 4 - 43
Target Start/End: Complemental strand, 969698 - 969658
Alignment:
Q  4 aatttattgtttcgtctaaggcacca-aaaatcttaggacc 43  Q
    |||||||||||||||||| ||||||| ||||||||||||||    
T  969698 aatttattgtttcgtctagggcaccaaaaaatcttaggacc 969658  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 49762415 - 49762375
Alignment:
Q  1 acaaatttattgtttcgtctaaggcaccaaaaatcttagga 41  Q
    |||| |||||||||||||| |||||| ||||||||||||||    
T  49762415 acaattttattgtttcgtccaaggcatcaaaaatcttagga 49762375  T

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Target: chr8 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 122 - 199
Target Start/End: Complemental strand, 24262760 - 24262683
Alignment:
Q  122 ttagactattagtaattgagttcttcatttcttttttcctttcaacttggcaagagatcaaaagttgtagaatttggt 199  Q
    ||||| |||||||||||||| |||| ||||||||| | ||||| ||| ||||| ||||||||||||||||| ||||||    
T  24262760 ttagattattagtaattgaggtcttaatttcttttcttctttctactcggcaatagatcaaaagttgtagactttggt 24262683  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000008; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 417 - 458
Target Start/End: Complemental strand, 16152626 - 16152585
Alignment:
Q  417 caattcttatatactttgtttctatatgaccatgttctcaat 458  Q
    |||||||||||||||||||||||||| ||||| |||||||||    
T  16152626 caattcttatatactttgtttctataagaccaggttctcaat 16152585  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 4 - 44
Target Start/End: Original strand, 23870213 - 23870253
Alignment:
Q  4 aatttattgtttcgtctaaggcaccaaaaatcttaggaccg 44  Q
    |||||||||||||| | ||||||||||||||||||||||||    
T  23870213 aatttattgtttcggccaaggcaccaaaaatcttaggaccg 23870253  T

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Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 4 - 44
Target Start/End: Complemental strand, 32554576 - 32554536
Alignment:
Q  4 aatttattgtttcgtctaaggcaccaaaaatcttaggaccg 44  Q
    ||||||||||||| || ||||||||||||||||||||||||    
T  32554576 aatttattgtttcttccaaggcaccaaaaatcttaggaccg 32554536  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000005; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 6 - 44
Target Start/End: Complemental strand, 21954443 - 21954405
Alignment:
Q  6 tttattgtttcgtctaaggcaccaaaaatcttaggaccg 44  Q
    ||||||| |||||||||||||| ||||||||||||||||    
T  21954443 tttattgattcgtctaaggcacaaaaaatcttaggaccg 21954405  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 4 - 40
Target Start/End: Original strand, 33344988 - 33345024
Alignment:
Q  4 aatttattgtttcgtctaaggcaccaaaaatcttagg 40  Q
    |||||||||||||||| | ||||||||||||||||||    
T  33344988 aatttattgtttcgtccagggcaccaaaaatcttagg 33345024  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 4 - 40
Target Start/End: Complemental strand, 35121910 - 35121874
Alignment:
Q  4 aatttattgtttcgtctaaggcaccaaaaatcttagg 40  Q
    |||||||||||||||| | ||||||||||||||||||    
T  35121910 aatttattgtttcgtccagggcaccaaaaatcttagg 35121874  T

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Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 4 - 45
Target Start/End: Complemental strand, 27538748 - 27538707
Alignment:
Q  4 aatttattgtttcgtctaaggcaccaaaaatcttaggaccga 45  Q
    ||||||||||||| || ||| |||||||||||||||||||||    
T  27538748 aatttattgtttcatccaagacaccaaaaatcttaggaccga 27538707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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