View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20576_low_4 (Length: 299)

Name: NF20576_low_4
Description: NF20576
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20576_low_4
NF20576_low_4
[»] chr2 (11 HSPs)
chr2 (39-282)||(16288252-16288494)
chr2 (121-282)||(16270767-16270919)
chr2 (163-242)||(16215397-16215476)
chr2 (186-242)||(16176486-16176542)
chr2 (161-228)||(16206985-16207052)
chr2 (186-242)||(16146134-16146190)
chr2 (186-242)||(16154766-16154822)
chr2 (185-242)||(16211192-16211249)
chr2 (13-77)||(16270660-16270725)
chr2 (195-242)||(16222819-16222866)
chr2 (195-228)||(16180720-16180753)


Alignment Details
Target: chr2 (Bit Score: 163; Significance: 4e-87; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 163; E-Value: 4e-87
Query Start/End: Original strand, 39 - 282
Target Start/End: Original strand, 16288252 - 16288494
Alignment:
Q  39 caacattacatatataatattgaggataatcaatacaca--ggttttggcacaagagtgaatccttactatttggacnnnnnnngggtctatatttaaat 136  Q
    |||||||||||||||||||||||||| ||||||||||||  ||||||||||||||||||||||||||||||||||||       ||||||||||||||||    
T  16288252 caacattacatatataatattgaggagaatcaatacacataggttttggcacaagagtgaatccttactatttggactttttttgggtctatatttaaat 16288351  T
Q  137 gcccctaaacataatacatagattactaaacttgcaaagaatttgtgtttaatggcgtaccaaatgtcaaaatctttcagtttctttgccatctttgttt 236  Q
    || |||||||||| ||||  || || ||||||| |||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  16288352 gcacctaaacatattaca--gaatattaaactttcaaagaattt-tgtttaatggggtaccaaatgtcaaaatctttcagtttctttgccatctttgttt 16288448  T
Q  237 tagttgcctcaggtaagcctcttcaccattgtatcttgcttaatat 282  Q
    |||||||| |||||||||||||||||||||||||||||||||||||    
T  16288449 tagttgccgcaggtaagcctcttcaccattgtatcttgcttaatat 16288494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 121 - 282
Target Start/End: Original strand, 16270767 - 16270919
Alignment:
Q  121 gggtctatatttaaatgcccctaaacataatacatagattactaaacttgcaaagaatttgtgtttaatggcgtaccaaatgtcaaaatctttcagtttc 220  Q
    ||||| ||| |||||||||||||||| |||| |||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||             
T  16270767 gggtccatagttaaatgcccctaaacgtaatgcatagattaccaaacttgcaaagaatttgtgtttaatggcgtcccaaatgtcaaaatct--------- 16270857  T
Q  221 tttgccatctttgttttagttgcctcaggtaagcctcttcaccattgtatcttgcttaatat 282  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||    
T  16270858 tttgccatctttgttttagttgcctcgggtaagcctcttcaccattgtgtcttgcttaatat 16270919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 163 - 242
Target Start/End: Original strand, 16215397 - 16215476
Alignment:
Q  163 taaacttgcaaagaatttgtgtttaatggcgtaccaaatgtcaaaatctttcagtttctttgccatctttgttttagttg 242  Q
    ||||||||||||||||   | ||||| |||| |||||||||||||||||||||||||||||||||| || | ||||||||    
T  16215397 taaacttgcaaagaatcattttttaacggcgaaccaaatgtcaaaatctttcagtttctttgccatattggctttagttg 16215476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 186 - 242
Target Start/End: Original strand, 16176486 - 16176542
Alignment:
Q  186 taatggcgtaccaaatgtcaaaatctttcagtttctttgccatctttgttttagttg 242  Q
    ||||| || |||||||||||| |||||||||||||||||||||||| ||||||||||    
T  16176486 taatgacgaaccaaatgtcaacatctttcagtttctttgccatcttggttttagttg 16176542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 161 - 228
Target Start/End: Original strand, 16206985 - 16207052
Alignment:
Q  161 actaaacttgcaaagaatttgtgtttaatggcgtaccaaatgtcaaaatctttcagtttctttgccat 228  Q
    ||||||||||||||||||   || |||| |||  ||||||||||||||||||||||||||||||||||    
T  16206985 actaaacttgcaaagaatcattgcttaagggcaaaccaaatgtcaaaatctttcagtttctttgccat 16207052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 186 - 242
Target Start/End: Original strand, 16146134 - 16146190
Alignment:
Q  186 taatggcgtaccaaatgtcaaaatctttcagtttctttgccatctttgttttagttg 242  Q
    ||||| || |||||||||||| ||||||||||||||||| |||||| ||||||||||    
T  16146134 taatgacgaaccaaatgtcaacatctttcagtttctttgtcatcttggttttagttg 16146190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 186 - 242
Target Start/End: Original strand, 16154766 - 16154822
Alignment:
Q  186 taatggcgtaccaaatgtcaaaatctttcagtttctttgccatctttgttttagttg 242  Q
    ||||| || |||||||||||| |||||||| ||||||||||||||| ||||||||||    
T  16154766 taatgacgaaccaaatgtcaacatctttcaatttctttgccatcttggttttagttg 16154822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 185 - 242
Target Start/End: Original strand, 16211192 - 16211249
Alignment:
Q  185 ttaatggcgtaccaaatgtcaaaatctttcagtttctttgccatctttgttttagttg 242  Q
    |||| |||| |||||||||||||||||||| ||||||||||||| || | ||||||||    
T  16211192 ttaaaggcgaaccaaatgtcaaaatctttcggtttctttgccatattggctttagttg 16211249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 13 - 77
Target Start/End: Original strand, 16270660 - 16270725
Alignment:
Q  13 aatattgtaaagaaaagtatatcaaacaacat-tacatatataatattgaggataatcaatacaca 77  Q
    |||||||| || ||||||||||||||||| |  |||||||||||||||||| ||||||| ||||||    
T  16270660 aatattgttaaaaaaagtatatcaaacaaaaaatacatatataatattgagcataatcagtacaca 16270725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 195 - 242
Target Start/End: Original strand, 16222819 - 16222866
Alignment:
Q  195 accaaatgtcaaaatctttcagtttctttgccatctttgttttagttg 242  Q
    |||||||||||||||||||| ||||||||||||| || | ||||||||    
T  16222819 accaaatgtcaaaatctttcggtttctttgccatattggctttagttg 16222866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 195 - 228
Target Start/End: Original strand, 16180720 - 16180753
Alignment:
Q  195 accaaatgtcaaaatctttcagtttctttgccat 228  Q
    |||||||||||||||||||| |||||||||||||    
T  16180720 accaaatgtcaaaatctttcggtttctttgccat 16180753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University