View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20576_low_5 (Length: 272)
Name: NF20576_low_5
Description: NF20576
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20576_low_5 |
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Alignment Details
Target: chr7 (Bit Score: 137; Significance: 1e-71; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 15 - 253
Target Start/End: Original strand, 6975012 - 6975258
Alignment:
| Q |
15 |
tatgaagctgttatttgaagctttttgatggacgcacannnnnnnnct--ttcaccactaaagcaaacacaacatatatgtattgtggannnnnnn---- |
108 |
Q |
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| T |
6975012 |
tatgaagctgttatttgaagttttttgatggacgcacattttttttctctttcaccgctaaagcaaacacaacatatatgtattgtggattttgtttttt |
6975111 |
T |
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| Q |
109 |
----atcatgttggattaaagaacaaatattgaaatattatcctgaaaattgtataatctactttttaaaagttaaaaagaaatgtttttgatgcaaagt |
204 |
Q |
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| T |
6975112 |
ttttatcatgatggattaaagaacaaatatagaaatattatcctgaaaattgtataatctactttttaaaagttaaaaagaaatgtttttgatgcaaagt |
6975211 |
T |
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| Q |
205 |
ttagttgtaaaccatttatatgtcttattctgtttgaagttcaattagt |
253 |
Q |
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| T |
6975212 |
ttagttgtaaaccatt--tatgtcttattctgtttgaagttcaattagt |
6975258 |
T |
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Target: chr1 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 138 - 183
Target Start/End: Original strand, 31820733 - 31820778
Alignment:
| Q |
138 |
aatattatcctgaaaattgtataatctactttttaaaagttaaaaa |
183 |
Q |
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||||||||| | ||||||||||| ||||||||||||||||| |||| |
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| T |
31820733 |
aatattatcttcaaaattgtatattctactttttaaaagttcaaaa |
31820778 |
T |
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