View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20576_low_6 (Length: 250)
Name: NF20576_low_6
Description: NF20576
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20576_low_6 |
 | |
|
| [»] chr4 (3 HSPs) |
| |
|
Alignment Details
Target: chr4 (Bit Score: 218; Significance: 1e-120; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 22 - 250
Target Start/End: Original strand, 54916087 - 54916318
Alignment:
| Q |
22 |
aaattattttggtatttgatgtgacaagccagcaatgcaagagaagagattatgtgcatgtaatataagaaaacgatcatctggtgtaccaagagcagtt |
121 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
54916087 |
aaattattttggtatttgatgtgacaagccagcaatgcaagagaagagattatgtgcatgtaatataagaaaacgatcatctggtgtaccaagagcagtt |
54916186 |
T |
|
| Q |
122 |
ttctggattctattggcactcatccatgtttttgaatccatatct---aagaagttcaaattggatacatctagagctacaatggtaacttcagtaaaga |
218 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
54916187 |
ttctggattctattggcactcatccatgtttttgaatccatatctaagaagaagttcaaattggatacatctagagctacaatggtaacttcagtaaaga |
54916286 |
T |
|
| Q |
219 |
tggtaaagcaccacaaaacattaagttctact |
250 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
54916287 |
tggtaaagcaccacaaaacattaagttctact |
54916318 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 70 - 171
Target Start/End: Original strand, 54924572 - 54924675
Alignment:
| Q |
70 |
attatgtgcatgtaatataagaaaacgatcatctggtgtaccaagagcagttttctggattctattggcactc--atccatgtttttgaatccatatcta |
167 |
Q |
| |
|
|||||||||| ||||||| |||||| |||| ||||||||||||| ||||| |||||||||||| ||||||||| |||||||| ||| | |||||||||| |
|
|
| T |
54924572 |
attatgtgcaagtaatatcagaaaatgatcctctggtgtaccaatagcagctttctggattctcttggcactctgatccatgtctttaactccatatcta |
54924671 |
T |
|
| Q |
168 |
agaa |
171 |
Q |
| |
|
|||| |
|
|
| T |
54924672 |
agaa |
54924675 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 10 - 77
Target Start/End: Original strand, 54924488 - 54924555
Alignment:
| Q |
10 |
aagaatattcagaaattattttggtatttgatgtgacaagccagcaatgcaagagaagagattatgtg |
77 |
Q |
| |
|
||||| |||||| |||||||||||||||||| |||||||||||||| ||| |||||||||||| |||| |
|
|
| T |
54924488 |
aagaaaattcaggaattattttggtatttgacgtgacaagccagcactgctagagaagagattctgtg |
54924555 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University