View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20576_low_7 (Length: 250)

Name: NF20576_low_7
Description: NF20576
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20576_low_7
NF20576_low_7
[»] chr1 (3 HSPs)
chr1 (13-250)||(48475779-48476016)
chr1 (103-250)||(34588178-34588328)
chr1 (103-184)||(17304481-17304562)
[»] chr7 (1 HSPs)
chr7 (31-250)||(27857131-27857344)
[»] chr6 (1 HSPs)
chr6 (103-250)||(29092120-29092270)
[»] chr4 (4 HSPs)
chr4 (103-250)||(47997258-47997408)
chr4 (103-250)||(48813519-48813669)
chr4 (190-250)||(12389809-12389869)
chr4 (207-250)||(40142786-40142829)
[»] chr3 (3 HSPs)
chr3 (103-250)||(5937499-5937649)
chr3 (103-250)||(13857798-13857948)
chr3 (103-250)||(5931786-5931936)


Alignment Details
Target: chr1 (Bit Score: 230; Significance: 1e-127; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 13 - 250
Target Start/End: Original strand, 48475779 - 48476016
Alignment:
Q  13 aatattcatatagacaaggatcaactaggacttcaaggttaaagttatttgccacttgttgaaagaaagaagatgtctgctatttcattttaaatattta 112  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48475779 aatattcatatagacaaggatcaactagaacttcaaggttaaagttattagccacttgttgaaagaaagaagatgtctgctatttcattttaaatattta 48475878  T
Q  113 gctttattttgtgttaccattataataattttacttggaaggatcttgatactattaacttatgcaagtatgtgctgagagtaactaaataatgattgta 212  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48475879 gctttattttgtgttaccattataataattttacttggaaggatcttgatactattaacttatgcaagtatgtgctgagagtaactaaataatgattgta 48475978  T
Q  213 catctttatactttaaactgaagttcattttattgtta 250  Q
    ||||||||||||||||||||||||||||||||||||||    
T  48475979 catctttatactttaaactgaagttcattttattgtta 48476016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 103 - 250
Target Start/End: Original strand, 34588178 - 34588328
Alignment:
Q  103 taaatatttagctttattttgtgttaccattataataattttacttggaaggatcttgatactattaacttatgcaagtatg---tgctgagagtaacta 199  Q
    |||| ||||||||||||||||| ||   ||| ||||| ||||  |||||||||| ||||  |||||||||||||||||||||   |  || |||||||||    
T  34588178 taaacatttagctttattttgttttgttattgtaatagttttctttggaaggatgttgactctattaacttatgcaagtatgatgtattgtgagtaacta 34588277  T
Q  200 aataatgattgtacatctttatactttaaactgaagttcattttattgtta 250  Q
    |  ||| ||||| ||||||||| ||| ||| ||||||| ||||||||||||    
T  34588278 aggaattattgtgcatctttatgcttcaaaatgaagttgattttattgtta 34588328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 103 - 184
Target Start/End: Original strand, 17304481 - 17304562
Alignment:
Q  103 taaatatttagctttattttgtgttaccattataataattttacttggaaggatcttgatactattaacttatgcaagtatg 184  Q
    |||| ||||||||||||||||| ||   ||| ||||| ||||  |||||||||| ||||  |||||||||||||||||||||    
T  17304481 taaacatttagctttattttgtcttgttattgtaatagttttctttggaaggatgttgactctattaacttatgcaagtatg 17304562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 68; Significance: 2e-30; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 31 - 250
Target Start/End: Complemental strand, 27857344 - 27857131
Alignment:
Q  31 gatcaactaggacttcaaggttaaagttatttgccacttgttgaaagaaagaagatgtctgctatttcattttaaatatttagctttattttgtgttacc 130  Q
    |||||| | ||||||||| ||| |||||||| || ||||||||| ||||    |||||||||||||      |||| ||||||||||||||||| || ||    
T  27857344 gatcaatttggacttcaaagttgaagttattagctacttgttgagagaa----gatgtctgctatta-----taaacatttagctttattttgttttgcc 27857254  T
Q  131 attataataattttacttggaaggatcttgatactattaacttatgcaagtatg---tgctgagagtaactaaataatgattgtacatctttatacttta 227  Q
    ||| ||||| ||||  |||||||||| ||||  |||||||||||||||||||||   |  |||||||||||||  ||| ||||| ||||||||||||| |    
T  27857253 attgtaatagttttctttggaaggatgttgactctattaacttatgcaagtatgatctattgagagtaactaaggaattattgtgcatctttatacttca 27857154  T
Q  228 aactgaagttcattttattgtta 250  Q
    |||||||||| ||||||||||||    
T  27857153 aactgaagttgattttattgtta 27857131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 61; Significance: 3e-26; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 103 - 250
Target Start/End: Original strand, 29092120 - 29092270
Alignment:
Q  103 taaatatttagctttattttgtgttaccattataataattttacttggaaggatcttgatactattaacttatgcaagtatg---tgctgagagtaacta 199  Q
    |||| ||||||||||||||||| || ||||| ||||| ||||  |||||||||| ||||  |||||||||||||||||||||   |  ||||||||||||    
T  29092120 taaacatttagctttattttgttttgccattgtaatagttttctttggaaggatgttgactctattaacttatgcaagtatgatgtattgagagtaacta 29092219  T
Q  200 aataatgattgtacatctttatactttaaactgaagttcattttattgtta 250  Q
    |  ||  ||||| ||||||||||||| ||||||||||| ||||||||||||    
T  29092220 aggaactattgtgcatctttatacttcaaactgaagttgattttattgtta 29092270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 61; Significance: 3e-26; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 103 - 250
Target Start/End: Complemental strand, 47997408 - 47997258
Alignment:
Q  103 taaatatttagctttattttgtgttaccattataataattttacttggaaggatcttgatactattaacttatgcaagtatg---tgctgagagtaacta 199  Q
    |||| ||||| ||||||||||| |  ||||| ||||| ||||| ||| |||||| ||||  |||||||||||||||||||||   |  ||||||||||||    
T  47997408 taaacatttaactttattttgtttagccattgtaatagttttatttgaaaggatgttgaccctattaacttatgcaagtatgatgtattgagagtaacta 47997309  T
Q  200 aataatgattgtacatctttatactttaaactgaagttcattttattgtta 250  Q
    |  ||||||||| ||||||||||||| ||||||||||| ||||||||||||    
T  47997308 aggaatgattgtgcatctttatacttcaaactgaagttgattttattgtta 47997258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 103 - 250
Target Start/End: Original strand, 48813519 - 48813669
Alignment:
Q  103 taaatatttagctttattttgtgttaccattataataattttacttggaaggatcttgatactattaacttatgcaagtatg---tgctgagagtaacta 199  Q
    |||| ||||||||||||||||| || | ||| ||||| ||||| |||||||||| ||||  ||||| |||||||||||||||   |  ||||||||| ||    
T  48813519 taaacatttagctttattttgttttgctattgtaatagttttatttggaaggatgttgaccctatttacttatgcaagtatgatgtattgagagtaagta 48813618  T
Q  200 aataatgattgtacatctttatactttaaactgaagttcattttattgtta 250  Q
    |  ||||||||| ||||||||||||| ||||||||||| ||||||||||||    
T  48813619 aggaatgattgtgcatctttatacttcaaactgaagttgattttattgtta 48813669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 190 - 250
Target Start/End: Complemental strand, 12389869 - 12389809
Alignment:
Q  190 agagtaactaaataatgattgtacatctttatactttaaactgaagttcattttattgtta 250  Q
    |||||||||||  ||| ||||| ||||||||||||| ||||||||||| ||||||||||||    
T  12389869 agagtaactaaggaattattgtgcatctttatacttcaaactgaagttgattttattgtta 12389809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 207 - 250
Target Start/End: Original strand, 40142786 - 40142829
Alignment:
Q  207 attgtacatctttatactttaaactgaagttcattttattgtta 250  Q
    ||||| ||||||||||||| ||||||||||| ||||||||||||    
T  40142786 attgtgcatctttatacttcaaactgaagttgattttattgtta 40142829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 57; Significance: 7e-24; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 103 - 250
Target Start/End: Original strand, 5937499 - 5937649
Alignment:
Q  103 taaatatttagctttattttgtgttaccattataataattttacttggaaggatcttgatactattaacttatgcaagtatg---tgctgagagtaacta 199  Q
    |||| ||||||||||||||||| || ||||| ||||| ||||  |||||||||| ||||  |||||||||||||||||||||   |  ||||||||||||    
T  5937499 taaacatttagctttattttgttttgccattgtaatagttttctttggaaggatgttgactctattaacttatgcaagtatgatgtattgagagtaacta 5937598  T
Q  200 aataatgattgtacatctttatactttaaactgaagttcattttattgtta 250  Q
    |  ||| ||||| ||| ||||| ||| ||||||||||| ||||||||||||    
T  5937599 aggaattattgtgcatttttatgcttcaaactgaagttgattttattgtta 5937649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 103 - 250
Target Start/End: Complemental strand, 13857948 - 13857798
Alignment:
Q  103 taaatatttagctttattttgtgttaccattataataattttacttggaaggatcttgatactattaacttatgcaagtatg---tgctgagagtaacta 199  Q
    |||| ||||||||||||||||| ||  |||| ||||| ||||  |||||||||| ||||  |||||||||||||||||||||   |  ||||||||||||    
T  13857948 taaacatttagctttattttgttttgtcattgtaatagttttctttggaaggatgttgactctattaacttatgcaagtatgatgtattgagagtaacta 13857849  T
Q  200 aataatgattgtacatctttatactttaaactgaagttcattttattgtta 250  Q
    |  ||| ||||| ||||||||| ||| ||||||||||| ||||||||||||    
T  13857848 aggaattattgtgcatctttatgcttcaaactgaagttgattttattgtta 13857798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 103 - 250
Target Start/End: Complemental strand, 5931936 - 5931786
Alignment:
Q  103 taaatatttagctttattttgtgttaccattataataattttacttggaaggatcttgatactattaacttatgcaagtatg---tgctgagagtaacta 199  Q
    |||| ||||||||||||||||| || ||||| ||||| ||||  |||||||||| ||||  |||||||||||| ||||||||   |  ||||||||||||    
T  5931936 taaacatttagctttattttgttttgccattgtaatagttttctttggaaggatgttgactctattaacttatccaagtatgatgtattgagagtaacta 5931837  T
Q  200 aataatgattgtacatctttatactttaaactgaagttcattttattgtta 250  Q
    |  ||| ||||  ||||||||| ||| ||||||||||| ||||||||||||    
T  5931836 aggaattattgggcatctttatgcttcaaactgaagttgattttattgtta 5931786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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