View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20577_high_2 (Length: 593)
Name: NF20577_high_2
Description: NF20577
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20577_high_2 |
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Alignment Details
Target: chr3 (Bit Score: 529; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 529; E-Value: 0
Query Start/End: Original strand, 1 - 577
Target Start/End: Original strand, 29533097 - 29533672
Alignment:
| Q |
1 |
aacctaaaactaattaatttgatgataaaactaatcaactacgtctttgttgagacaaaattaatttgagataaaattgcaatacttttcattttggaaa |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29533097 |
aacctaaaactaattaatttgatgataaaactaatcaactacgtctttgttgagacaaaattaatttgagataaaattgcaatacttttcattttggaaa |
29533196 |
T |
|
| Q |
101 |
taatagaatgtgatgaaatacttttcgttactcttgattgttttcgacttatgagccatttacttgttgtatttttaaagatacatggtaaaaaataatt |
200 |
Q |
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| T |
29533197 |
taatagaatgtgatgaaatacttttcgttactcttgattgttttcgacttatgagccatttacttgttgtatttttaaagatacatggtaaaaaataatt |
29533296 |
T |
|
| Q |
201 |
attttaggaggcctaaagcctttccttcaccggcttgcctcttgggtcggccgtgtattaatatgtgctatattagcaaccacaatttgaactttagatt |
300 |
Q |
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| T |
29533297 |
attttaggaggcctaaagcctttccttcaccggcttgcctcttgggtcggccgtgtattaatatgtgctatatt-gcaaccacaatttgaactttagatt |
29533395 |
T |
|
| Q |
301 |
tcctagtttcggtattnnnnnnnngtcgtttctttgggtatcactactatgctagggttagttttctccattgagtggagagtgtgattcttccactagg |
400 |
Q |
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| T |
29533396 |
tcctagtttcggtatt-aaaaaaagtcgtttctttgggtatcactactatgctagggttagttttctccattgagtggagagtgtgattcttccactagg |
29533494 |
T |
|
| Q |
401 |
aatcattaatacgtttctctccttcccaaaggtcccctttgcctccatttgcatctattcccttcaatctttgagtcctaagaatgaaccatttctttga |
500 |
Q |
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| T |
29533495 |
aatcattaacacgtttctctccttcccaaaggtcccctttgcctccatttgcatctattcccttcaatctttgagtcctaagaatgaaccatttctttga |
29533594 |
T |
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| Q |
501 |
-ttttttgccttttaaggtttgtgcttcaatccttattggtctcttactctcttatacggtggtggtattgtgccatc |
577 |
Q |
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| T |
29533595 |
tttttttgccttttaaggtttgtgcttcaatccttattggtctcttactctcttatacggtggtggtattgtgccatc |
29533672 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 346 - 385
Target Start/End: Original strand, 8054092 - 8054131
Alignment:
| Q |
346 |
actatgctagggttagttttctccattgagtggagagtgt |
385 |
Q |
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| T |
8054092 |
actatgttagagttagttttctccattgagtggagagtgt |
8054131 |
T |
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