View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20577_high_5 (Length: 425)

Name: NF20577_high_5
Description: NF20577
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20577_high_5
NF20577_high_5
[»] chr1 (11 HSPs)
chr1 (13-425)||(29099669-29100073)
chr1 (156-271)||(19258742-19258857)
chr1 (154-273)||(2509028-2509147)
chr1 (154-273)||(34307206-34307325)
chr1 (154-273)||(39249931-39250050)
chr1 (154-273)||(46901803-46901922)
chr1 (156-238)||(28647392-28647474)
chr1 (194-272)||(10146971-10147049)
chr1 (390-425)||(15496013-15496048)
chr1 (156-220)||(8848923-8848987)
chr1 (154-229)||(9642933-9643009)
[»] chr7 (22 HSPs)
chr7 (154-271)||(23980137-23980254)
chr7 (154-271)||(5811231-5811348)
chr7 (154-273)||(7699951-7700070)
chr7 (154-273)||(7700149-7700268)
chr7 (154-273)||(7700347-7700466)
chr7 (154-273)||(7700545-7700664)
chr7 (154-273)||(42221031-42221150)
chr7 (154-271)||(13108154-13108270)
chr7 (154-271)||(31148296-31148413)
chr7 (154-273)||(28307563-28307682)
chr7 (154-273)||(36346633-36346751)
chr7 (154-273)||(21807390-21807509)
chr7 (154-273)||(26972271-26972390)
chr7 (154-273)||(34108430-34108549)
chr7 (151-273)||(30887704-30887826)
chr7 (154-239)||(20086696-20086781)
chr7 (154-226)||(46475075-46475147)
chr7 (154-273)||(45782728-45782847)
chr7 (154-229)||(34828113-34828188)
chr7 (154-272)||(38321014-38321132)
chr7 (154-271)||(15020288-15020402)
chr7 (186-229)||(42950113-42950156)
[»] chr6 (6 HSPs)
chr6 (154-271)||(14022940-14023057)
chr6 (154-271)||(24208450-24208567)
chr6 (154-273)||(3986973-3987092)
chr6 (154-273)||(13697573-13697691)
chr6 (154-273)||(3118115-3118234)
chr6 (154-273)||(15345727-15345844)
[»] chr2 (13 HSPs)
chr2 (158-271)||(37914308-37914421)
chr2 (158-273)||(36315565-36315680)
chr2 (154-273)||(44958117-44958236)
chr2 (154-273)||(33732573-33732692)
chr2 (154-273)||(37498931-37499052)
chr2 (154-272)||(3830965-3831081)
chr2 (154-273)||(14572999-14573118)
chr2 (154-229)||(24137160-24137235)
chr2 (154-271)||(6376306-6376418)
chr2 (154-273)||(16089826-16089944)
chr2 (154-222)||(41188824-41188892)
chr2 (388-425)||(6705645-6705682)
chr2 (387-425)||(40900329-40900367)
[»] chr8 (13 HSPs)
chr8 (154-273)||(30432343-30432462)
chr8 (154-273)||(12665348-12665468)
chr8 (154-273)||(42162602-42162721)
chr8 (154-273)||(44081784-44081903)
chr8 (154-271)||(33726017-33726135)
chr8 (156-273)||(36189220-36189337)
chr8 (154-229)||(31318853-31318928)
chr8 (154-273)||(10203668-10203787)
chr8 (154-273)||(18184557-18184676)
chr8 (154-273)||(43186031-43186150)
chr8 (154-229)||(38845091-38845165)
chr8 (186-261)||(31547-31622)
chr8 (154-256)||(42668850-42668951)
[»] chr5 (16 HSPs)
chr5 (154-273)||(1815684-1815803)
chr5 (154-273)||(40888010-40888129)
chr5 (154-273)||(9408107-9408226)
chr5 (154-273)||(39370931-39371050)
chr5 (154-271)||(2237282-2237399)
chr5 (154-242)||(17225352-17225440)
chr5 (156-273)||(4300613-4300730)
chr5 (156-262)||(14831559-14831665)
chr5 (154-271)||(13347134-13347251)
chr5 (181-273)||(33404531-33404623)
chr5 (154-268)||(41003918-41004031)
chr5 (154-273)||(27553441-27553560)
chr5 (154-239)||(31800596-31800681)
chr5 (189-273)||(12164255-12164339)
chr5 (188-271)||(19596169-19596252)
chr5 (154-273)||(19124540-19124657)
[»] chr4 (13 HSPs)
chr4 (158-273)||(45829329-45829444)
chr4 (158-273)||(46192363-46192478)
chr4 (154-273)||(44275710-44275829)
chr4 (154-273)||(3672278-3672397)
chr4 (154-273)||(6112634-6112753)
chr4 (154-273)||(7217769-7217888)
chr4 (154-273)||(28093164-28093283)
chr4 (154-273)||(49243819-49243938)
chr4 (154-273)||(21391023-21391142)
chr4 (154-273)||(35544916-35545035)
chr4 (154-229)||(51038811-51038887)
chr4 (233-273)||(43245522-43245562)
chr4 (156-272)||(54849793-54849909)
[»] chr3 (18 HSPs)
chr3 (154-273)||(46112012-46112131)
chr3 (154-273)||(21559565-21559684)
chr3 (154-273)||(36749410-36749529)
chr3 (154-271)||(39467169-39467286)
chr3 (154-273)||(34749966-34750085)
chr3 (154-273)||(36370406-36370525)
chr3 (154-273)||(43999993-44000112)
chr3 (163-271)||(39072350-39072458)
chr3 (154-273)||(22894684-22894803)
chr3 (154-273)||(51339851-51339968)
chr3 (154-273)||(30735564-30735682)
chr3 (181-273)||(29460664-29460756)
chr3 (181-273)||(29471516-29471608)
chr3 (189-273)||(38231297-38231381)
chr3 (274-327)||(37067076-37067129)
chr3 (154-269)||(20856221-20856334)
chr3 (157-247)||(53638165-53638255)
chr3 (177-270)||(29820390-29820483)
[»] scaffold0062 (1 HSPs)
scaffold0062 (151-273)||(6722-6844)
[»] scaffold0043 (1 HSPs)
scaffold0043 (181-273)||(87259-87350)
[»] scaffold0092 (1 HSPs)
scaffold0092 (387-425)||(23310-23348)


Alignment Details
Target: chr1 (Bit Score: 288; Significance: 1e-161; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 13 - 425
Target Start/End: Complemental strand, 29100073 - 29099669
Alignment:
Q  13 aaaatgtcaacagataaacgtatagatatagatatagtactaaaattttcacaaaacacgtgtttccactatgtcaacagataaacgtattgatatagat 112  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||      ||||    
T  29100073 aaaatgtcaacagataaacgtatagatatagatatagtactaaaattttcacaaaacacgtgtttccactatgttaacagataaacgtat------agat 29099980  T
Q  113 atagatcttggttgagtttcctnnnnnnnnnntctttgttaagtaatttcacatcacatcatcaccccttttaatctcttttttcaatgtttttgccaca 212  Q
    ||||||||| ||| ||||||||            ||  ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||    
T  29099979 atagatctttgttaagtttcctaaaaaaaaaaaatta-ttaagtaatttcacatcacatcatcaccccttttaatttcttttttcaatgtttttgtcaca 29099881  T
Q  213 tgtcacaaatgtgtgtgagcgtaaaagagtgtatgtcatctaagatggtttatgtataagaccgccagctcgagctacaaaacatgggttactttgcaag 312  Q
    |||||||||||||||||  |||||| ||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  29099880 tgtcacaaatgtgtgtggacgtaaa-gagtgtatgccatctaaggtggtttatgtataagaccgccagctcgagctacaaaacatgagttactttgcaag 29099782  T
Q  313 aattatggttggggtccgccagcttggagttataacgtaactctcctcaagagttattttctgacactgggtcttttgtggtggttttcatggtggtgct 412  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  29099781 aattatggttggggtccgccagcttggagttataacgtaactctcctcaagagttattttctgacactgggtcttttgtggtggtttccatggtggtgct 29099682  T
Q  413 gatactgggtctt 425  Q
    |||||||||||||    
T  29099681 gatactgggtctt 29099669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 156 - 271
Target Start/End: Original strand, 19258742 - 19258857
Alignment:
Q  156 taatttcacatcacatcatcaccccttttaatctcttttttcaatgtttttgccacatgtcacaaatgtgtgtgagcgtaaaagagtgtatgtcatctaa 255  Q
    |||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||| | |||| | ||||||  ||||||| || || |    
T  19258742 taatttcacatcacatcaccaccccttttcatctcttttttcaatgtttttgccacatgtcacaaatatatgtgggtgtaaaaaggtgtatgccacctta 19258841  T
Q  256 gatggtttatgtataa 271  Q
    ||||||||||||||||    
T  19258842 gatggtttatgtataa 19258857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 154 - 273
Target Start/End: Complemental strand, 2509147 - 2509028
Alignment:
Q  154 agtaatttcacatcacatcatcaccccttttaatctcttttttcaatgtttttgccacatgtcacaaatgtgtgtgagcgtaaaagagtgtatgtcatct 253  Q
    |||||||| |||||| |||| ||||| |||| ||||||| |||||||||||||||||| ||||||||||||||||| | |||||||  ||||||||| ||    
T  2509147 agtaattttacatcatatcaccaccctttttcatctcttctttcaatgtttttgccacgtgtcacaaatgtgtgtgggtgtaaaaggatgtatgtcacct 2509048  T
Q  254 aagatggtttatgtataaga 273  Q
    ||| ||||| ||||||||||    
T  2509047 aaggtggttcatgtataaga 2509028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 154 - 273
Target Start/End: Original strand, 34307206 - 34307325
Alignment:
Q  154 agtaatttcacatcacatcatcaccccttttaatctcttttttcaatgtttttgccacatgtcacaaatgtgtgtgagcgtaaaagagtgtatgtcatct 253  Q
    |||||||| |||||| |||||||||| |||| || |||| |||||||||||||||||| |||||||||||||||||   ||||||| ||||||| || ||    
T  34307206 agtaattttacatcatatcatcaccctttttcatatcttctttcaatgtttttgccacgtgtcacaaatgtgtgtggatgtaaaagggtgtatgccacct 34307305  T
Q  254 aagatggtttatgtataaga 273  Q
    ||| ||||||||||||||||    
T  34307306 aaggtggtttatgtataaga 34307325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 154 - 273
Target Start/End: Original strand, 39249931 - 39250050
Alignment:
Q  154 agtaatttcacatcacatcatcaccccttttaatctcttttttcaatgtttttgccacatgtcacaaatgtgtgtgagcgtaaaagagtgtatgtcatct 253  Q
    |||||||| |||| | |||| || || |||| ||||||| |||||||||||||||||| |||||||||||||| || | ||||||| ||||||| || ||    
T  39249931 agtaattttacattatatcaccatcctttttcatctcttctttcaatgtttttgccacgtgtcacaaatgtgtatgggtgtaaaagggtgtatgccacct 39250030  T
Q  254 aagatggtttatgtataaga 273  Q
    ||||||||| ||||||||||    
T  39250031 aagatggttcatgtataaga 39250050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 154 - 273
Target Start/End: Original strand, 46901803 - 46901922
Alignment:
Q  154 agtaatttcacatcacatcatcaccccttttaatctcttttttcaatgtttttgccacatgtcacaaatgtgtgtgagcgtaaaagagtgtatgtcatct 253  Q
    |||||||| |||||| |||||||||| |||| ||||||| ||| |||||||||||||| |||||||||| |||||  | ||||||  |||||||||| ||    
T  46901803 agtaattttacatcatatcatcaccctttttcatctcttcttttaatgtttttgccacgtgtcacaaatatgtgttggtgtaaaatggtgtatgtcacct 46901902  T
Q  254 aagatggtttatgtataaga 273  Q
    ||| ||||| ||||||||||    
T  46901903 aaggtggttcatgtataaga 46901922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 156 - 238
Target Start/End: Complemental strand, 28647474 - 28647392
Alignment:
Q  156 taatttcacatcacatcatcaccccttttaatctcttttttcaatgtttttgccacatgtcacaaatgtgtgtgagcgtaaaa 238  Q
    |||||||||||||||||| |||||||||| |||| || ||||||||||||||||| || |||||||| |||||| | ||||||    
T  28647474 taatttcacatcacatcaccaccccttttcatctattctttcaatgtttttgccaaatatcacaaatatgtgtgggtgtaaaa 28647392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 194 - 272
Target Start/End: Complemental strand, 10147049 - 10146971
Alignment:
Q  194 tttcaatgtttttgccacatgtcacaaatgtgtgtgagcgtaaaagagtgtatgtcatctaagatggtttatgtataag 272  Q
    ||||| ||||||||||||||||||||| |||||||| | || |||| ||||||| || ||||| ||||  |||||||||    
T  10147049 tttcactgtttttgccacatgtcacaattgtgtgtgggggtcaaagggtgtatgccacctaaggtggtccatgtataag 10146971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 390 - 425
Target Start/End: Complemental strand, 15496048 - 15496013
Alignment:
Q  390 gtggtggttttcatggtggtgctgatactgggtctt 425  Q
    ||||||||||||||||||||||||||||| ||||||    
T  15496048 gtggtggttttcatggtggtgctgatacttggtctt 15496013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 156 - 220
Target Start/End: Original strand, 8848923 - 8848987
Alignment:
Q  156 taatttcacatcacatcatcaccccttttaatctcttttttcaatgtttttgccacatgtcacaa 220  Q
    |||||||||||||||   ||||||| |   ||||||| |||||||||||||| ||||||||||||    
T  8848923 taatttcacatcacactctcaccccctcccatctcttatttcaatgtttttgtcacatgtcacaa 8848987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 154 - 229
Target Start/End: Original strand, 9642933 - 9643009
Alignment:
Q  154 agtaatttcacatcacatcatca-ccccttttaatctcttttttcaatgtttttgccacatgtcacaaatgtgtgtg 229  Q
    ||||||||||||||| ||||||| |||||| | ||||||| ||||| |||||||| ||  |||||||| | ||||||    
T  9642933 agtaatttcacatcatatcatcacccccttctcatctcttctttcattgtttttgtcatgtgtcacaattatgtgtg 9643009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 78; Significance: 3e-36; HSPs: 22)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 154 - 271
Target Start/End: Complemental strand, 23980254 - 23980137
Alignment:
Q  154 agtaatttcacatcacatcatcaccccttttaatctcttttttcaatgtttttgccacatgtcacaaatgtgtgtgagcgtaaaagagtgtatgtcatct 253  Q
    ||||||||||||||||||| ||||||||||| ||||||| |||||||||||||||||||||||||||||||||||| | ||||||| ||||||| || ||    
T  23980254 agtaatttcacatcacatcctcaccccttttcatctcttctttcaatgtttttgccacatgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacct 23980155  T
Q  254 aagatggtttatgtataa 271  Q
    | | ||||||||||||||    
T  23980154 atggtggtttatgtataa 23980137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 154 - 271
Target Start/End: Original strand, 5811231 - 5811348
Alignment:
Q  154 agtaatttcacatcacatcatcaccccttttaatctcttttttcaatgtttttgccacatgtcacaaatgtgtgtgagcgtaaaagagtgtatgtcatct 253  Q
    ||||||||||||||||||| ||||||||||| ||||||| |||||||||||||||||||||||||||||||||||| | | |||||  |||||| || ||    
T  5811231 agtaatttcacatcacatcctcaccccttttcatctcttctttcaatgtttttgccacatgtcacaaatgtgtgtgggtgaaaaaggatgtatgccacct 5811330  T
Q  254 aagatggtttatgtataa 271  Q
    | | ||||||||||||||    
T  5811331 atggtggtttatgtataa 5811348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 154 - 273
Target Start/End: Original strand, 7699951 - 7700070
Alignment:
Q  154 agtaatttcacatcacatcatcaccccttttaatctcttttttcaatgtttttgccacatgtcacaaatgtgtgtgagcgtaaaagagtgtatgtcatct 253  Q
    |||||||| | |||| ||||||| || |||| ||||||| |||||||||||||||||| ||||||||||||||||| | ||||||| ||||||| |||||    
T  7699951 agtaattttatatcatatcatcatccttttttatctcttctttcaatgtttttgccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccatct 7700050  T
Q  254 aagatggtttatgtataaga 273  Q
    ||| ||||||||||||||||    
T  7700051 aaggtggtttatgtataaga 7700070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 154 - 273
Target Start/End: Original strand, 7700149 - 7700268
Alignment:
Q  154 agtaatttcacatcacatcatcaccccttttaatctcttttttcaatgtttttgccacatgtcacaaatgtgtgtgagcgtaaaagagtgtatgtcatct 253  Q
    |||||||| | |||| ||||||| || |||| ||||||| |||||||||||||||||| ||||||||||||||||| | ||||||| ||||||| |||||    
T  7700149 agtaattttatatcatatcatcatccttttttatctcttctttcaatgtttttgccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccatct 7700248  T
Q  254 aagatggtttatgtataaga 273  Q
    ||| ||||||||||||||||    
T  7700249 aaggtggtttatgtataaga 7700268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 154 - 273
Target Start/End: Original strand, 7700347 - 7700466
Alignment:
Q  154 agtaatttcacatcacatcatcaccccttttaatctcttttttcaatgtttttgccacatgtcacaaatgtgtgtgagcgtaaaagagtgtatgtcatct 253  Q
    |||||||| | |||| ||||||| || |||| ||||||| |||||||||||||||||| ||||||||||||||||| | ||||||| ||||||| |||||    
T  7700347 agtaattttatatcatatcatcatccttttttatctcttctttcaatgtttttgccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccatct 7700446  T
Q  254 aagatggtttatgtataaga 273  Q
    ||| ||||||||||||||||    
T  7700447 aaggtggtttatgtataaga 7700466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 154 - 273
Target Start/End: Original strand, 7700545 - 7700664
Alignment:
Q  154 agtaatttcacatcacatcatcaccccttttaatctcttttttcaatgtttttgccacatgtcacaaatgtgtgtgagcgtaaaagagtgtatgtcatct 253  Q
    |||||||| | |||| ||||||| || |||| ||||||| |||||||||||||||||| ||||||||||||||||| | ||||||| ||||||| |||||    
T  7700545 agtaattttatatcatatcatcatccttttttatctcttctttcaatgtttttgccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccatct 7700644  T
Q  254 aagatggtttatgtataaga 273  Q
    ||| ||||||||||||||||    
T  7700645 aaggtggtttatgtataaga 7700664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 154 - 273
Target Start/End: Original strand, 42221031 - 42221150
Alignment:
Q  154 agtaatttcacatcacatcatcaccccttttaatctcttttttcaatgtttttgccacatgtcacaaatgtgtgtgagcgtaaaagagtgtatgtcatct 253  Q
    |||||||| |||||| ||||||||||||||| || |||| |||||||||||||||||| ||||||||||||||||| | |||||| |||||||| || ||    
T  42221031 agtaatttaacatcatatcatcacccctttttatatcttctttcaatgtttttgccacgtgtcacaaatgtgtgtgggtgtaaaaaagtgtatgccacct 42221130  T
Q  254 aagatggtttatgtataaga 273  Q
    ||| ||||| ||||||||||    
T  42221131 aaggtggttcatgtataaga 42221150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 154 - 271
Target Start/End: Complemental strand, 13108270 - 13108154
Alignment:
Q  154 agtaatttcacatcacatcatcaccccttttaatctcttttttcaatgtttttgccacatgtcacaaatgtgtgtgagcgtaaaagagtgtatgtcatct 253  Q
    ||||||||||||||||||| |||||||||| | |||||| |||||| ||||||||||||||||||||||||||||| | ||||||| ||||||| |  ||    
T  13108270 agtaatttcacatcacatcctcacccctttca-tctcttctttcaacgtttttgccacatgtcacaaatgtgtgtgggtgtaaaagggtgtatgccgcct 13108172  T
Q  254 aagatggtttatgtataa 271  Q
    ||| ||||||||||||||    
T  13108171 aaggtggtttatgtataa 13108154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 154 - 271
Target Start/End: Complemental strand, 31148413 - 31148296
Alignment:
Q  154 agtaatttcacatcacatcatcaccccttttaatctcttttttcaatgtttttgccacatgtcacaaatgtgtgtgagcgtaaaagagtgtatgtcatct 253  Q
    |||||||| |||||| |||||||||| |||| ||||||| |||||||||||||||||  ||||||||||||||||| | ||||||| ||||||| || ||    
T  31148413 agtaattttacatcatatcatcacccattttcatctcttctttcaatgtttttgccatgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacct 31148314  T
Q  254 aagatggtttatgtataa 271  Q
    ||||||||| ||||||||    
T  31148313 aagatggttcatgtataa 31148296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 154 - 273
Target Start/End: Original strand, 28307563 - 28307682
Alignment:
Q  154 agtaatttcacatcacatcatcaccccttttaatctcttttttcaatgtttttgccacatgtcacaaatgtgtgtgagcgtaaaagagtgtatgtcatct 253  Q
    |||||||| |||||| |||||||||| |||| ||||||| |||||||||||||||||| |||| |||||||||||| | ||||||| ||||||| || ||    
T  28307563 agtaattttacatcatatcatcaccctttttcatctcttctttcaatgtttttgccacgtgtcgcaaatgtgtgtgggtgtaaaagggtgtatgccacct 28307662  T
Q  254 aagatggtttatgtataaga 273  Q
    ||| | ||||||||||||||    
T  28307663 aaggtagtttatgtataaga 28307682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 154 - 273
Target Start/End: Original strand, 36346633 - 36346751
Alignment:
Q  154 agtaatttcacatcacatcatcaccccttttaatctcttttttcaatgtttttgccacatgtcacaaatgtgtgtgagcgtaaaagagtgtatgtcatct 253  Q
    |||||||| |||||| |||||||||  |||| ||||||| |||||||||||||||||| |||||||||||||| || | ||||||| ||||||| || ||    
T  36346633 agtaattttacatcatatcatcacct-ttttcatctcttctttcaatgtttttgccacgtgtcacaaatgtgtctgggtgtaaaagggtgtatgccacct 36346731  T
Q  254 aagatggtttatgtataaga 273  Q
    ||||||||||||||||||||    
T  36346732 aagatggtttatgtataaga 36346751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 154 - 273
Target Start/End: Original strand, 21807390 - 21807509
Alignment:
Q  154 agtaatttcacatcacatcatcaccccttttaatctcttttttcaatgtttttgccacatgtcacaaatgtgtgtgagcgtaaaagagtgtatgtcatct 253  Q
    ||||||||||||| ||||||||| || |||| ||||||| ||||||| |||||||||||| |||||||| |||||| | ||||||  ||||||| |||||    
T  21807390 agtaatttcacataacatcatcatccattttcatctcttctttcaatatttttgccacatatcacaaatttgtgtgggtgtaaaatggtgtatgccatct 21807489  T
Q  254 aagatggtttatgtataaga 273  Q
    ||| ||||| ||||||||||    
T  21807490 aaggtggttcatgtataaga 21807509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 154 - 273
Target Start/End: Original strand, 26972271 - 26972390
Alignment:
Q  154 agtaatttcacatcacatcatcaccccttttaatctcttttttcaatgtttttgccacatgtcacaaatgtgtgtgagcgtaaaagagtgtatgtcatct 253  Q
    |||||||| |||||| |||||||||| |||| ||||||  |||||||||||||||||| ||||| ||||||||||| | ||||||| ||||||| || ||    
T  26972271 agtaattttacatcatatcatcaccctttttcatctctcctttcaatgtttttgccacgtgtcataaatgtgtgtgggtgtaaaagggtgtatgccacct 26972370  T
Q  254 aagatggtttatgtataaga 273  Q
    ||| ||||| ||||||||||    
T  26972371 aaggtggttcatgtataaga 26972390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 154 - 273
Target Start/End: Complemental strand, 34108549 - 34108430
Alignment:
Q  154 agtaatttcacatcacatcatcaccccttttaatctcttttttcaatgtttttgccacatgtcacaaatgtgtgtgagcgtaaaagagtgtatgtcatct 253  Q
    |||||||| |||||| |||||||||| |||| |||||||  ||||||||||||| || ||||||||||| |||||| | ||||||| |||||||||| ||    
T  34108549 agtaattttacatcatatcatcaccctttttcatctcttcattcaatgtttttgtcatatgtcacaaatatgtgtgggtgtaaaagggtgtatgtcacct 34108450  T
Q  254 aagatggtttatgtataaga 273  Q
    ||| ||||| ||||||||||    
T  34108449 aaggtggttcatgtataaga 34108430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 151 - 273
Target Start/End: Complemental strand, 30887826 - 30887704
Alignment:
Q  151 ttaagtaatttcacatcacatcatcaccccttttaatctcttttttcaatgtttttgccacatgtcacaaatgtgtgtgagcgtaaaagagtgtatgtca 250  Q
    ||||||||||| |||||| |||||||||| |||| |||||||  |||||||||||||| || |||||||||||| |||| | ||||||| ||||||| ||    
T  30887826 ttaagtaattttacatcatatcatcaccctttttcatctcttcattcaatgtttttgctacgtgtcacaaatgtatgtgggtgtaaaagtgtgtatgcca 30887727  T
Q  251 tctaagatggtttatgtataaga 273  Q
     ||||||| ||| ||||||||||    
T  30887726 cctaagattgttcatgtataaga 30887704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 154 - 239
Target Start/End: Original strand, 20086696 - 20086781
Alignment:
Q  154 agtaatttcacatcacatcatcaccccttttaatctcttttttcaatgtttttgccacatgtcacaaatgtgtgtgagcgtaaaag 239  Q
    ||||||||||||||||||||||||||||||| ||||||| ||| ||||||||||||| ||||| ||||||| |||| | |||||||    
T  20086696 agtaatttcacatcacatcatcacccctttttatctcttcttttaatgtttttgccagatgtctcaaatgtatgtgggtgtaaaag 20086781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 154 - 226
Target Start/End: Complemental strand, 46475147 - 46475075
Alignment:
Q  154 agtaatttcacatcacatcatcaccccttttaatctcttttttcaatgtttttgccacatgtcacaaatgtgt 226  Q
    ||||||||||||||||||| ||||||||||| ||||||| ||||||||||||||  |||||||||||||||||    
T  46475147 agtaatttcacatcacatcgtcaccccttttcatctcttctttcaatgtttttgttacatgtcacaaatgtgt 46475075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 154 - 273
Target Start/End: Original strand, 45782728 - 45782847
Alignment:
Q  154 agtaatttcacatcacatcatcaccccttttaatctcttttttcaatgtttttgccacatgtcacaaatgtgtgtgagcgtaaaagagtgtatgtcatct 253  Q
    |||||||| |||||| |||||||||| |||| ||||||| |||||||||||||| ||| ||||||||||||||||| | ||||||   |||||| || ||    
T  45782728 agtaattttacatcatatcatcaccctttttcatctcttctttcaatgtttttgtcacgtgtcacaaatgtgtgtgggtgtaaaatgatgtatgccacct 45782827  T
Q  254 aagatggtttatgtataaga 273  Q
    ||  ||||| ||||||||||    
T  45782828 aaagtggttgatgtataaga 45782847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 154 - 229
Target Start/End: Complemental strand, 34828188 - 34828113
Alignment:
Q  154 agtaatttcacatcacatcatcaccccttttaatctcttttttcaatgtttttgccacatgtcacaaatgtgtgtg 229  Q
    |||||||| |||||| ||||||| | ||||| ||||||| |||||||||||||||||| |||||||||||||||||    
T  34828188 agtaattttacatcatatcatcatcacttttcatctcttctttcaatgtttttgccacgtgtcacaaatgtgtgtg 34828113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 154 - 272
Target Start/End: Complemental strand, 38321132 - 38321014
Alignment:
Q  154 agtaatttcacatcacatcatcaccccttttaatctcttttttcaatgtttttgccacatgtcacaaatgtgtgtgagcgtaaaagagtgtatgtcatct 253  Q
    |||| |||||||||||| ||||||| | | | || |||| ||||||||||||||||||||||||||| ||| |||| | || |||  ||||||| || ||    
T  38321132 agtactttcacatcacaccatcacctcctctcatatcttctttcaatgtttttgccacatgtcacaattgtatgtgggtgttaaaatgtgtatgccacct 38321033  T
Q  254 aagatggtttatgtataag 272  Q
    ||||||||| |||||||||    
T  38321032 aagatggttaatgtataag 38321014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 154 - 271
Target Start/End: Complemental strand, 15020402 - 15020288
Alignment:
Q  154 agtaatttcacatcacatcatcaccccttttaatctcttttttcaatgtttttgccacatgtcacaaatgtgtgtgagcgtaaaagagtgtatgtcatct 253  Q
    ||||||||||||||| ||| ||||||||||   |||||| ||||||||||||||||| ||||||||||||  |||| | |||||||  |||||| || ||    
T  15020402 agtaatttcacatcatatcttcacccctttcg-tctcttctttcaatgtttttgccatatgtcacaaatg--tgtgggtgtaaaaggttgtatgccacct 15020306  T
Q  254 aagatggtttatgtataa 271  Q
    | | ||||||||||||||    
T  15020305 atggtggtttatgtataa 15020288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 186 - 229
Target Start/End: Original strand, 42950113 - 42950156
Alignment:
Q  186 atctcttttttcaatgtttttgccacatgtcacaaatgtgtgtg 229  Q
    ||||||||||||||||| |||||||||| |||||||||||||||    
T  42950113 atctcttttttcaatgtatttgccacatatcacaaatgtgtgtg 42950156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 78; Significance: 3e-36; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 154 - 271
Target Start/End: Complemental strand, 14023057 - 14022940
Alignment:
Q  154 agtaatttcacatcacatcatcaccccttttaatctcttttttcaatgtttttgccacatgtcacaaatgtgtgtgagcgtaaaagagtgtatgtcatct 253  Q
    ||||||||||||||||||| ||||||||| | ||||||| |||||||||||||||||||||||||||||||||||| | ||||||| ||||||| || ||    
T  14023057 agtaatttcacatcacatcgtcaccccttgtcatctcttctttcaatgtttttgccacatgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacct 14022958  T
Q  254 aagatggtttatgtataa 271  Q
    ||| ||||||||||||||    
T  14022957 aaggtggtttatgtataa 14022940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 154 - 271
Target Start/End: Complemental strand, 24208567 - 24208450
Alignment:
Q  154 agtaatttcacatcacatcatcaccccttttaatctcttttttcaatgtttttgccacatgtcacaaatgtgtgtgagcgtaaaagagtgtatgtcatct 253  Q
    ||||||||||||||||||| |||||| |||| ||||||| |||||||||||||||||||| ||||||||||||||| | |||||| |||||||  || ||    
T  24208567 agtaatttcacatcacatcctcaccctttttcatctcttctttcaatgtttttgccacatatcacaaatgtgtgtgggtgtaaaatagtgtataccacct 24208468  T
Q  254 aagatggtttatgtataa 271  Q
    | ||||||||||||||||    
T  24208467 atgatggtttatgtataa 24208450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 154 - 273
Target Start/End: Original strand, 3986973 - 3987092
Alignment:
Q  154 agtaatttcacatcacatcatcaccccttttaatctcttttttcaatgtttttgccacatgtcacaaatgtgtgtgagcgtaaaagagtgtatgtcatct 253  Q
    |||||||| |||||| || |||| ||||||| ||||||| |||||||||||||||||| ||||||||||||||||| | ||||||| ||||||| || ||    
T  3986973 agtaattttacatcatattatcatcccttttcatctcttctttcaatgtttttgccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacct 3987072  T
Q  254 aagatggtttatgtataaga 273  Q
    ||| ||||| ||||||||||    
T  3987073 aaggtggttcatgtataaga 3987092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 154 - 273
Target Start/End: Complemental strand, 13697691 - 13697573
Alignment:
Q  154 agtaatttcacatcacatcatcaccccttttaatctcttttttcaatgtttttgccacatgtcacaaatgtgtgtgagcgtaaaagagtgtatgtcatct 253  Q
    |||||||| | |||| |||||||||| |||| ||||||| ||||||||||||| |||| | |||||||||||| || | ||||||| ||| |||||||||    
T  13697691 agtaattttatatcatatcatcacccgttttcatctcttctttcaatgtttttaccacgtatcacaaatgtgtatg-gtgtaaaagggtgcatgtcatct 13697593  T
Q  254 aagatggtttatgtataaga 273  Q
    ||||||||||||||||||||    
T  13697592 aagatggtttatgtataaga 13697573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 154 - 273
Target Start/End: Original strand, 3118115 - 3118234
Alignment:
Q  154 agtaatttcacatcacatcatcaccccttttaatctcttttttcaatgtttttgccacatgtcacaaatgtgtgtgagcgtaaaagagtgtatgtcatct 253  Q
    |||||||| ||||||  ||| ||||| |||| |||| || |||||||||||||||||| ||||||||||||||||||| ||||||| ||||||| || ||    
T  3118115 agtaattttacatcatgtcaccacccttttttatctattctttcaatgtttttgccacgtgtcacaaatgtgtgtgagtgtaaaagggtgtatgccacct 3118214  T
Q  254 aagatggtttatgtataaga 273  Q
    ||| ||||| || |||||||    
T  3118215 aaggtggttcatatataaga 3118234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 154 - 273
Target Start/End: Original strand, 15345727 - 15345844
Alignment:
Q  154 agtaatttcacatcacatcatcaccccttttaatctcttttttcaatgtttttgccacatgtcacaaatgtgtgtgagcgtaaaagagtgtatgtcatct 253  Q
    |||||||| | |||| |||||||||  |||| |||| || |||||||||||||||||| |||||||||  ||| || | |||||||||| |||| || ||    
T  15345727 agtaatttgatatcatatcatcaccttttttcatcttttctttcaatgtttttgccacgtgtcacaaa--tgtatgggtgtaaaagagtatatgccacct 15345824  T
Q  254 aagatggtttatgtataaga 273  Q
    ||| ||||| ||||||||||    
T  15345825 aaggtggttgatgtataaga 15345844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 74; Significance: 8e-34; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 158 - 271
Target Start/End: Original strand, 37914308 - 37914421
Alignment:
Q  158 atttcacatcacatcatcaccccttttaatctcttttttcaatgtttttgccacatgtcacaaatgtgtgtgagcgtaaaagagtgtatgtcatctaaga 257  Q
    |||||||||||||| |||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||   ||||||| ||||||| || |||||     
T  37914308 atttcacatcacattatcacccctttttatctcttctttcaatgtttttgccacatgtcacaaatgtgtgtggatgtaaaagggtgtatgccacctaagg 37914407  T
Q  258 tggtttatgtataa 271  Q
    ||||||||||||||    
T  37914408 tggtttatgtataa 37914421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 158 - 273
Target Start/End: Complemental strand, 36315680 - 36315565
Alignment:
Q  158 atttcacatcacatcatcaccccttttaatctcttttttcaatgtttttgccacatgtcacaaatgtgtgtgagcgtaaaagagtgtatgtcatctaaga 257  Q
    |||||||||||||| |||||| ||||| ||||||| |||||||||||||||||||||||||||||||||||| | ||||||| ||||||| || |||||     
T  36315680 atttcacatcacattatcacctctttttatctcttctttcaatgtttttgccacatgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaagg 36315581  T
Q  258 tggtttatgtataaga 273  Q
    ||||| ||||||||||    
T  36315580 tggttcatgtataaga 36315565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 154 - 273
Target Start/End: Complemental strand, 44958236 - 44958117
Alignment:
Q  154 agtaatttcacatcacatcatcaccccttttaatctcttttttcaatgtttttgccacatgtcacaaatgtgtgtgagcgtaaaagagtgtatgtcatct 253  Q
    |||||||| |||||| |||||||||| |||| ||||||| |||||||||||||||||||||||||||||||||||| | ||||||| ||||||| || ||    
T  44958236 agtaattttacatcatatcatcacccttttttatctcttctttcaatgtttttgccacatgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacct 44958137  T
Q  254 aagatggtttatgtataaga 273  Q
    ||| ||||| ||||||||||    
T  44958136 aaggtggttcatgtataaga 44958117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 154 - 273
Target Start/End: Complemental strand, 33732692 - 33732573
Alignment:
Q  154 agtaatttcacatcacatcatcaccccttttaatctcttttttcaatgtttttgccacatgtcacaaatgtgtgtgagcgtaaaagagtgtatgtcatct 253  Q
    |||||||| |||||| |||| ||||| |||| ||||||| |||||||||||||||||||||||||||||||||||| | ||||||| ||||||| || ||    
T  33732692 agtaattttacatcatatcaccaccctttttcatctcttctttcaatgtttttgccacatgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacct 33732593  T
Q  254 aagatggtttatgtataaga 273  Q
    ||| ||||| ||||||||||    
T  33732592 aaggtggttcatgtataaga 33732573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 154 - 273
Target Start/End: Original strand, 37498931 - 37499052
Alignment:
Q  154 agtaatttcacatcacatcatcacccc--ttttaatctcttttttcaatgtttttgccacatgtcacaaatgtgtgtgagcgtaaaagagtgtatgtcat 251  Q
    |||||||| |||||| ||||||||||   |||| ||||||| |||||||||||||||||||||||||||||||||||||| |||||||  |||||| ||     
T  37498931 agtaattttacatcatatcatcaccctctttttcatctcttctttcaatgtttttgccacatgtcacaaatgtgtgtgagtgtaaaaggatgtatgccag 37499030  T
Q  252 ctaagatggtttatgtataaga 273  Q
     |||||||||| || |||||||    
T  37499031 ttaagatggttgatatataaga 37499052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 154 - 272
Target Start/End: Original strand, 3830965 - 3831081
Alignment:
Q  154 agtaatttcacatcacatcatcaccccttttaatctcttttttcaatgtttttgccacatgtcacaaatgtgtgtgagcgtaaaagagtgtatgtcatct 253  Q
    |||||||| |||||| || |||||| ||||| ||||||| |||||||||||||||||| |||||||||  |||||| | ||||||| |||||||||| ||    
T  3830965 agtaattttacatcagataatcaccacttttcatctcttctttcaatgtttttgccacgtgtcacaaa--tgtgtgggtgtaaaagggtgtatgtcacct 3831062  T
Q  254 aagatggtttatgtataag 272  Q
    ||| ||||| |||||||||    
T  3831063 aaggtggttcatgtataag 3831081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 154 - 273
Target Start/End: Complemental strand, 14573118 - 14572999
Alignment:
Q  154 agtaatttcacatcacatcatcaccccttttaatctcttttttcaatgtttttgccacatgtcacaaatgtgtgtgagcgtaaaagagtgtatgtcatct 253  Q
    |||||||| |||||| |||||||||| |||  ||||||| ||||||||||||||| || |||||||||||||||||   ||||||| ||| ||| || ||    
T  14573118 agtaattttacatcatatcatcacccttttccatctcttctttcaatgtttttgctacgtgtcacaaatgtgtgtggatgtaaaagggtggatgccacct 14573019  T
Q  254 aagatggtttatgtataaga 273  Q
    ||| ||||||||||||||||    
T  14573018 aaggtggtttatgtataaga 14572999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 154 - 229
Target Start/End: Original strand, 24137160 - 24137235
Alignment:
Q  154 agtaatttcacatcacatcatcaccccttttaatctcttttttcaatgtttttgccacatgtcacaaatgtgtgtg 229  Q
    ||||||||||||||||||| ||| ||||||| ||||||| |||||||||||||| |||||||||||||||||||||    
T  24137160 agtaatttcacatcacatcctcatcccttttcatctcttctttcaatgtttttgtcacatgtcacaaatgtgtgtg 24137235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 154 - 271
Target Start/End: Original strand, 6376306 - 6376418
Alignment:
Q  154 agtaatttcacatcacatcatcaccccttttaatctcttttttcaatgtttttgccacatgtcacaaatgtgtgtgagcgtaaaagagtgtatgtcatct 253  Q
    ||||||||||||||||||| |||||| |||| ||||||| ||||||||     ||||||||||||||||||||||| | ||||||| ||||||| || ||    
T  6376306 agtaatttcacatcacatcctcacccattttcatctcttctttcaatg-----gccacatgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacct 6376400  T
Q  254 aagatggtttatgtataa 271  Q
    | | ||||||||||||||    
T  6376401 atggtggtttatgtataa 6376418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 154 - 273
Target Start/End: Complemental strand, 16089944 - 16089826
Alignment:
Q  154 agtaatttcacatcacatcatcaccccttttaatctcttttttcaatgtttttgccacatgtcacaaatgtgtgtgagcgtaaaagagtgtatgtcatct 253  Q
    |||||||| |||||| |||| ||||  ||||| |||||| |||||||||||||||||| ||||||||||||||||| | ||||||| ||||||| ||  |    
T  16089944 agtaattttacatcatatcaccacctttttta-tctcttctttcaatgtttttgccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccactt 16089846  T
Q  254 aagatggtttatgtataaga 273  Q
    ||| ||||| ||||||||||    
T  16089845 aaggtggttcatgtataaga 16089826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 154 - 222
Target Start/End: Complemental strand, 41188892 - 41188824
Alignment:
Q  154 agtaatttcacatcacatcatcaccccttttaatctcttttttcaatgtttttgccacatgtcacaaat 222  Q
    |||||||| |||||||||||||| ||||||| || || |||||||||||||||||||||||||| ||||    
T  41188892 agtaattttacatcacatcatcatcccttttcatatcatttttcaatgtttttgccacatgtcataaat 41188824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 388 - 425
Target Start/End: Complemental strand, 6705682 - 6705645
Alignment:
Q  388 ttgtggtggttttcatggtggtgctgatactgggtctt 425  Q
    ||||||||||||||||||||||||||||||| ||||||    
T  6705682 ttgtggtggttttcatggtggtgctgatacttggtctt 6705645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 387 - 425
Target Start/End: Complemental strand, 40900367 - 40900329
Alignment:
Q  387 tttgtggtggttttcatggtggtgctgatactgggtctt 425  Q
    |||||||||||||  ||||||||||||||||||||||||    
T  40900367 tttgtggtggtttctatggtggtgctgatactgggtctt 40900329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 72; Significance: 1e-32; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 154 - 273
Target Start/End: Complemental strand, 30432462 - 30432343
Alignment:
Q  154 agtaatttcacatcacatcatcaccccttttaatctcttttttcaatgtttttgccacatgtcacaaatgtgtgtgagcgtaaaagagtgtatgtcatct 253  Q
    |||||||| |||||| ||||||||||||||| ||||||| |||||||||||||||||| ||||||||||||||||| |  |||||| ||||||| |||||    
T  30432462 agtaattttacatcatatcatcaccccttttcatctcttctttcaatgtttttgccacgtgtcacaaatgtgtgtgggtataaaagggtgtatgccatct 30432363  T
Q  254 aagatggtttatgtataaga 273  Q
    ||| ||||| ||||||||||    
T  30432362 aaggtggttcatgtataaga 30432343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 154 - 273
Target Start/End: Complemental strand, 12665468 - 12665348
Alignment:
Q  154 agtaatttcacatcacatcatcacccctttta-atctcttttttcaatgtttttgccacatgtcacaaatgtgtgtgagcgtaaaagagtgtatgtcatc 252  Q
    |||||||| |||||| |||||||||| ||||  ||||||| |||||||||||||||||||||| ||||||||||||||| ||||||| ||||||| || |    
T  12665468 agtaattttacatcatatcatcaccctttttttatctcttctttcaatgtttttgccacatgttacaaatgtgtgtgagtgtaaaagggtgtatgccacc 12665369  T
Q  253 taagatggtttatgtataaga 273  Q
    |||| ||||| ||||||||||    
T  12665368 taaggtggttcatgtataaga 12665348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 154 - 273
Target Start/End: Complemental strand, 42162721 - 42162602
Alignment:
Q  154 agtaatttcacatcacatcatcaccccttttaatctcttttttcaatgtttttgccacatgtcacaaatgtgtgtgagcgtaaaagagtgtatgtcatct 253  Q
    |||||||| |||||| |||||||||| |||| ||||||| |||||||||||||| ||| |||||||||||||| || | ||||||| ||||||| || ||    
T  42162721 agtaattttacatcatatcatcaccctttttcatctcttctttcaatgtttttgtcacgtgtcacaaatgtgtttgggtgtaaaagggtgtatgacacct 42162622  T
Q  254 aagatggtttatgtataaga 273  Q
    ||| ||||| ||||||||||    
T  42162621 aaggtggttcatgtataaga 42162602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 154 - 273
Target Start/End: Complemental strand, 44081903 - 44081784
Alignment:
Q  154 agtaatttcacatcacatcatcaccccttttaatctcttttttcaatgtttttgccacatgtcacaaatgtgtgtgagcgtaaaagagtgtatgtcatct 253  Q
    |||||||| |||| | |||||||||| |||| ||||||| ||||||||||||| |||| ||| ||||||||||||| | ||||||| ||||||| || ||    
T  44081903 agtaattttacattatatcatcaccctttttcatctcttctttcaatgttttttccacgtgttacaaatgtgtgtgggtgtaaaagggtgtatgccacct 44081804  T
Q  254 aagatggtttatgtataaga 273  Q
    ||||||||| ||||||||||    
T  44081803 aagatggttcatgtataaga 44081784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 154 - 271
Target Start/End: Complemental strand, 33726135 - 33726017
Alignment:
Q  154 agtaatttcacatcacatcatcaccc-cttttaatctcttttttcaatgtttttgccacatgtcacaaatgtgtgtgagcgtaaaagagtgtatgtcatc 252  Q
    ||||||||||||||||||| ||| || ||||| ||||||| ||||||||||||||||||||||||||||||| |||| | ||||||  ||||||| || |    
T  33726135 agtaatttcacatcacatcgtcatccacttttcatctcttctttcaatgtttttgccacatgtcacaaatgtttgtgggtgtaaaaaggtgtatgccacc 33726036  T
Q  253 taagatggtttatgtataa 271  Q
    |||  ||||||||||||||    
T  33726035 taaagtggtttatgtataa 33726017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 156 - 273
Target Start/End: Complemental strand, 36189337 - 36189220
Alignment:
Q  156 taatttcacatcacatcatcaccccttttaatctcttttttcaatgtttttgccacatgtcacaaatgtgtgtgagcgtaaaagagtgtatgtcatctaa 255  Q
    |||||| | |||| |||||||| |||||| ||||||| ||||||| |||||||||| |||||||||||| |||| | ||||||| ||||||| || ||||    
T  36189337 taattttatatcatatcatcactccttttcatctcttctttcaatatttttgccacgtgtcacaaatgtatgtgggtgtaaaagggtgtatgccacctaa 36189238  T
Q  256 gatggtttatgtataaga 273  Q
    ||||||| ||||||||||    
T  36189237 gatggttcatgtataaga 36189220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 154 - 229
Target Start/End: Complemental strand, 31318928 - 31318853
Alignment:
Q  154 agtaatttcacatcacatcatcaccccttttaatctcttttttcaatgtttttgccacatgtcacaaatgtgtgtg 229  Q
    |||||||| |||||| |||||||||| |||| ||||||| |||||||||||||||||| |||||||||||||||||    
T  31318928 agtaattttacatcatatcatcaccctttttcatctcttctttcaatgtttttgccacgtgtcacaaatgtgtgtg 31318853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 154 - 273
Target Start/End: Complemental strand, 10203787 - 10203668
Alignment:
Q  154 agtaatttcacatcacatcatcaccccttttaatctcttttttcaatgtttttgccacatgtcacaaatgtgtgtgagcgtaaaagagtgtatgtcatct 253  Q
    |||||||| | |||| |||| ||||| |||| ||||||| ||||||| |||||| ||| |||||||||||||||||   |||||||  ||||||||| ||    
T  10203787 agtaattttatatcatatcaccaccctttttcatctcttctttcaatatttttgtcacgtgtcacaaatgtgtgtggatgtaaaaggatgtatgtcacct 10203688  T
Q  254 aagatggtttatgtataaga 273  Q
    ||| ||||| ||||||||||    
T  10203687 aaggtggttcatgtataaga 10203668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 154 - 273
Target Start/End: Complemental strand, 18184676 - 18184557
Alignment:
Q  154 agtaatttcacatcacatcatcaccccttttaatctcttttttcaatgtttttgccacatgtcacaaatgtgtgtgagcgtaaaagagtgtatgtcatct 253  Q
    |||||||| | |||| ||||||||||||||| |||||||  |||||||||||  |||| |||||||||| ||||||   ||||||| ||||||||||  |    
T  18184676 agtaattttatatcatatcatcaccccttttcatctcttcattcaatgttttcaccacgtgtcacaaatatgtgtggatgtaaaagggtgtatgtcactt 18184577  T
Q  254 aagatggtttatgtataaga 273  Q
    ||| ||||| || |||||||    
T  18184576 aaggtggttcatatataaga 18184557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 154 - 273
Target Start/End: Complemental strand, 43186150 - 43186031
Alignment:
Q  154 agtaatttcacatcacatcatcaccccttttaatctcttttttcaatgtttttgccacatgtcacaaatgtgtgtgagcgtaaaagagtgtatgtcatct 253  Q
    |||||||| | |||| |||||||||  |||| |||| || |||||||||||||||||||| |||||||||||||   | |||||||||| |||| || ||    
T  43186150 agtaattttatatcatatcatcaccttttttcatcttttctttcaatgtttttgccacatatcacaaatgtgtgcaggtgtaaaagagtatatgccacct 43186051  T
Q  254 aagatggtttatgtataaga 273  Q
    ||  ||||| ||||||||||    
T  43186050 aaagtggttgatgtataaga 43186031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 154 - 229
Target Start/End: Original strand, 38845091 - 38845165
Alignment:
Q  154 agtaatttcacatcacatcatcaccccttttaatctcttttttcaatgtttttgccacatgtcacaaatgtgtgtg 229  Q
    ||||||||| |||||||||||||||||| || |||| || ||||||| ||||| ||||||||||||| ||||||||    
T  38845091 agtaatttctcatcacatcatcacccctctt-atcttttctttcaatattttttccacatgtcacaattgtgtgtg 38845165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 186 - 261
Target Start/End: Original strand, 31547 - 31622
Alignment:
Q  186 atctcttttttcaatgtttttgccacatgtcacaaatgtgtgtgagcgtaaaagagtgtatgtcatctaagatggt 261  Q
    ||||||| ||||||||||||||||||||||||||| ||| |||| | || |||| |||||||  | ||||||||||    
T  31547 atctcttctttcaatgtttttgccacatgtcacaattgtatgtgggtgtcaaagtgtgtatgctacctaagatggt 31622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 154 - 256
Target Start/End: Original strand, 42668850 - 42668951
Alignment:
Q  154 agtaatttcacatcacatcatcaccccttttaatctcttttttcaatgtttttgccacatgtcacaaatgtgtgtgagcgtaaaagagtgtatgtcatct 253  Q
    ||||||||||||||| | ||||||| || | | | |||| ||| |||||||||||||| |||||||| |||||||| | || |||| ||||||| || ||    
T  42668850 agtaatttcacatcataccatcacctctctca-tatcttcttttaatgtttttgccacgtgtcacaattgtgtgtgggtgtcaaagtgtgtatgccacct 42668948  T
Q  254 aag 256  Q
    |||    
T  42668949 aag 42668951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 72; Significance: 1e-32; HSPs: 16)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 154 - 273
Target Start/End: Original strand, 1815684 - 1815803
Alignment:
Q  154 agtaatttcacatcacatcatcaccccttttaatctcttttttcaatgtttttgccacatgtcacaaatgtgtgtgagcgtaaaagagtgtatgtcatct 253  Q
    |||||||| |||||| ||||||||||||||| ||||||| |||||||||||||||||| |||||||||| ||||||   ||||||| |||||||||| ||    
T  1815684 agtaattttacatcatatcatcaccccttttcatctcttctttcaatgtttttgccacgtgtcacaaatatgtgtggatgtaaaagggtgtatgtcacct 1815783  T
Q  254 aagatggtttatgtataaga 273  Q
    ||||||||| ||||||||||    
T  1815784 aagatggttcatgtataaga 1815803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 154 - 273
Target Start/End: Original strand, 40888010 - 40888129
Alignment:
Q  154 agtaatttcacatcacatcatcaccccttttaatctcttttttcaatgtttttgccacatgtcacaaatgtgtgtgagcgtaaaagagtgtatgtcatct 253  Q
    |||||||| |||||| |||| ||||| |||| ||||||| |||||||||||||||||| ||||||||||||||||| | ||||||||||||||| || ||    
T  40888010 agtaattttacatcatatcaccaccctttttcatctcttctttcaatgtttttgccacgtgtcacaaatgtgtgtgggtgtaaaagagtgtatgccacct 40888109  T
Q  254 aagatggtttatgtataaga 273  Q
    ||| ||||||||||||||||    
T  40888110 aaggtggtttatgtataaga 40888129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 154 - 273
Target Start/End: Original strand, 9408107 - 9408226
Alignment:
Q  154 agtaatttcacatcacatcatcaccccttttaatctcttttttcaatgtttttgccacatgtcacaaatgtgtgtgagcgtaaaagagtgtatgtcatct 253  Q
    |||||||| |||||| |||||||||| |||| ||||||| |||||||||||||||||| ||||||||||||||||||| ||||||| | |||||||| ||    
T  9408107 agtaattttacatcatatcatcaccctttttcatctcttctttcaatgtttttgccacgtgtcacaaatgtgtgtgagtgtaaaagggcgtatgtcacct 9408206  T
Q  254 aagatggtttatgtataaga 273  Q
     || ||||| ||||||||||    
T  9408207 gaggtggttcatgtataaga 9408226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 154 - 273
Target Start/End: Complemental strand, 39371050 - 39370931
Alignment:
Q  154 agtaatttcacatcacatcatcaccccttttaatctcttttttcaatgtttttgccacatgtcacaaatgtgtgtgagcgtaaaagagtgtatgtcatct 253  Q
    |||||||| |||||| |||||||||| |||| ||||||| |||||||||||||| ||| ||||||||||||||||| | ||||||| ||||||| |||||    
T  39371050 agtaattttacatcatatcatcaccctttttcatctcttctttcaatgtttttggcacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccatct 39370951  T
Q  254 aagatggtttatgtataaga 273  Q
    ||| ||||| ||||||||||    
T  39370950 aaggtggttcatgtataaga 39370931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 154 - 271
Target Start/End: Complemental strand, 2237399 - 2237282
Alignment:
Q  154 agtaatttcacatcacatcatcaccccttttaatctcttttttcaatgtttttgccacatgtcacaaatgtgtgtgagcgtaaaagagtgtatgtcatct 253  Q
    |||||||| |||||| |||||||||| |||| ||||||| |||||||||||||||||| |||||||||| |||||| | ||||||| |||||||||| ||    
T  2237399 agtaattttacatcatatcatcaccctttttcatctcttctttcaatgtttttgccacgtgtcacaaatatgtgtgggtgtaaaagggtgtatgtcacct 2237300  T
Q  254 aagatggtttatgtataa 271  Q
    ||| ||||| ||||||||    
T  2237299 aaggtggttcatgtataa 2237282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 154 - 242
Target Start/End: Complemental strand, 17225440 - 17225352
Alignment:
Q  154 agtaatttcacatcacatcatcaccccttttaatctcttttttcaatgtttttgccacatgtcacaaatgtgtgtgagcgtaaaagagt 242  Q
    ||||||||||||||||||||||||| ||||| ||||||| |||||||||||||| ||||||||||||||||||||| | ||||||||||    
T  17225440 agtaatttcacatcacatcatcacctcttttcatctcttctttcaatgtttttgtcacatgtcacaaatgtgtgtgggtgtaaaagagt 17225352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 156 - 273
Target Start/End: Original strand, 4300613 - 4300730
Alignment:
Q  156 taatttcacatcacatcatcaccccttttaatctcttttttcaatgtttttgccacatgtcacaaatgtgtgtgagcgtaaaagagtgtatgtcatctaa 255  Q
    |||||||||||||||||| ||||  |||| ||||||| ||||||||||||||||| ||||||||||| |||||| | |||||||  | ||||||| ||||    
T  4300613 taatttcacatcacatcaccaccattttttatctcttatttcaatgtttttgccatatgtcacaaatatgtgtgggtgtaaaaggatatatgtcacctaa 4300712  T
Q  256 gatggtttatgtataaga 273  Q
     |||||| ||||||||||    
T  4300713 aatggttcatgtataaga 4300730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 156 - 262
Target Start/End: Complemental strand, 14831665 - 14831559
Alignment:
Q  156 taatttcacatcacatcatcaccccttttaatctcttttttcaatgtttttgccacatgtcacaaatgtgtgtgagcgtaaaagagtgtatgtcatctaa 255  Q
    |||||| |||||| |||||||||| |||| ||||||| |||||||||||||||||| | ||||||||||||||| | ||||||| ||||||| || ||||    
T  14831665 taattttacatcatatcatcaccctttttcatctcttctttcaatgtttttgccacgtatcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaa 14831566  T
Q  256 gatggtt 262  Q
    | |||||    
T  14831565 ggtggtt 14831559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 154 - 271
Target Start/End: Complemental strand, 13347251 - 13347134
Alignment:
Q  154 agtaatttcacatcacatcatcaccccttttaatctcttttttcaatgtttttgccacatgtcacaaatgtgtgtgagcgtaaaagagtgtatgtcatct 253  Q
    |||||||  |||||| |||||||| | |||| |||| || |||||||||||||||||| ||||||||||||||||| | ||||||| ||||||| || ||    
T  13347251 agtaattatacatcatatcatcactctttttcatctattctttcaatgtttttgccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacct 13347152  T
Q  254 aagatggtttatgtataa 271  Q
    ||| ||||| ||||||||    
T  13347151 aaggtggttcatgtataa 13347134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 181 - 273
Target Start/End: Original strand, 33404531 - 33404623
Alignment:
Q  181 ttttaatctcttttttcaatgtttttgccacatgtcacaaatgtgtgtgagcgtaaaagagtgtatgtcatctaagatggtttatgtataaga 273  Q
    |||| ||||||| |||||||||||||||||| ||||||||||||||||| | ||||||| ||||||| || ||||| ||||| ||||||||||    
T  33404531 ttttcatctcttctttcaatgtttttgccacgtgtcacaaatgtgtgtgggtgtaaaagtgtgtatggcacctaaggtggttcatgtataaga 33404623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 154 - 268
Target Start/End: Original strand, 41003918 - 41004031
Alignment:
Q  154 agtaatttcacatcacatcatcaccccttttaatctcttttttcaatgtttttgccacatgtcacaaatgtgtgtgagcgtaaaagagtgtatgtcatct 253  Q
    |||||||| |||||||||||||| ||||||| || ||||||| |||| |||||||||||||||| |||||||| |||| ||||||| ||||||| || ||    
T  41003918 agtaattttacatcacatcatcatccctttttatatcttttt-caatatttttgccacatgtcataaatgtgtatgagtgtaaaagggtgtatgccacct 41004016  T
Q  254 aagatggtttatgta 268  Q
    ||  ||||| |||||    
T  41004017 aaagtggttcatgta 41004031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 154 - 273
Target Start/End: Original strand, 27553441 - 27553560
Alignment:
Q  154 agtaatttcacatcacatcatcaccccttttaatctcttttttcaatgtttttgccacatgtcacaaatgtgtgtgagcgtaaaagagtgtatgtcatct 253  Q
    |||||||| |||||| || ||||||  ||||  |||||| |||||||||||||||||| ||||||||||||||||| | ||||||  || |||| || ||    
T  27553441 agtaattttacatcagataatcaccatttttcttctcttctttcaatgtttttgccacgtgtcacaaatgtgtgtgggtgtaaaatggtatatgccacct 27553540  T
Q  254 aagatggtttatgtataaga 273  Q
    || |||||| ||||||||||    
T  27553541 aaaatggttcatgtataaga 27553560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 154 - 239
Target Start/End: Complemental strand, 31800681 - 31800596
Alignment:
Q  154 agtaatttcacatcacatcatcaccccttttaatctcttttttcaatgtttttgccacatgtcacaaatgtgtgtgagcgtaaaag 239  Q
    |||||||| |||||| ||||||||||||||| |||| || ||||||| |||||||||| ||||| ||||||||||| | |||||||    
T  31800681 agtaattttacatcatatcatcaccccttttcatcttttctttcaatatttttgccacgtgtcataaatgtgtgtgggtgtaaaag 31800596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 189 - 273
Target Start/End: Complemental strand, 12164339 - 12164255
Alignment:
Q  189 tcttttttcaatgtttttgccacatgtcacaaatgtgtgtgagcgtaaaagagtgtatgtcatctaagatggtttatgtataaga 273  Q
    |||| ||||||||||||||||||||| ||||| ||||||||||  | ||||| ||| || || ||||||||||| ||||||||||    
T  12164339 tcttctttcaatgtttttgccacatgccacaactgtgtgtgagtattaaagaatgtgtgccacctaagatggttcatgtataaga 12164255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 188 - 271
Target Start/End: Original strand, 19596169 - 19596252
Alignment:
Q  188 ctcttttttcaatgtttttgccacatgtcacaaatgtgtgtgagcgtaaaagagtgtatgtcatctaagatggtttatgtataa 271  Q
    ||||| |||||||||||||||||||||||||||||||| |||   ||||||  ||||||| || ||||| ||||| ||||||||    
T  19596169 ctcttctttcaatgtttttgccacatgtcacaaatgtgcgtggatgtaaaaaggtgtatgccacctaaggtggttcatgtataa 19596252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 154 - 273
Target Start/End: Original strand, 19124540 - 19124657
Alignment:
Q  154 agtaatttcacatcacatcatcaccccttttaatctcttttttcaatgtttttgccacatgtcacaaatgtgtgtgagcgtaaaagagtgtatgtcatct 253  Q
    |||||||| |||||| ||||||||    ||| ||||||| ||| ||||||||||||||| ||||||| |||||||| | || |||  ||||||| |||||    
T  19124540 agtaattttacatcatatcatcacattctttcatctcttcttt-aatgtttttgccacacgtcacaattgtgtgtgggtgtcaaa-tgtgtatgccatct 19124637  T
Q  254 aagatggtttatgtataaga 273  Q
    ||||| ||  ||||||||||    
T  19124638 aagatagtccatgtataaga 19124657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 72; Significance: 1e-32; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 158 - 273
Target Start/End: Original strand, 45829329 - 45829444
Alignment:
Q  158 atttcacatcacatcatcaccccttttaatctcttttttcaatgtttttgccacatgtcacaaatgtgtgtgagcgtaaaagagtgtatgtcatctaaga 257  Q
    |||||||||||||| |||||||||||| ||||||| |||||||||||||||||||||||||||||||||||| | ||||||  |||||||||| ||||      
T  45829329 atttcacatcacattatcacccctttttatctcttctttcaatgtttttgccacatgtcacaaatgtgtgtgggtgtaaaaaggtgtatgtcacctaaag 45829428  T
Q  258 tggtttatgtataaga 273  Q
    ||||| ||||||||||    
T  45829429 tggttcatgtataaga 45829444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 158 - 273
Target Start/End: Complemental strand, 46192478 - 46192363
Alignment:
Q  158 atttcacatcacatcatcaccccttttaatctcttttttcaatgtttttgccacatgtcacaaatgtgtgtgagcgtaaaagagtgtatgtcatctaaga 257  Q
    |||||||||||||| |||||||||||| ||||||| |||||||||||||||||||||||||||||||||||| | ||||||| ||||||| || |||||     
T  46192478 atttcacatcacattatcacccctttttatctcttctttcaatgtttttgccacatgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaagg 46192379  T
Q  258 tggtttatgtataaga 273  Q
    || || ||||||||||    
T  46192378 tgattcatgtataaga 46192363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 154 - 273
Target Start/End: Complemental strand, 44275829 - 44275710
Alignment:
Q  154 agtaatttcacatcacatcatcaccccttttaatctcttttttcaatgtttttgccacatgtcacaaatgtgtgtgagcgtaaaagagtgtatgtcatct 253  Q
    |||||||| |||||| |||||||||| |||||||||||| ||||||| |||||| ||| ||||||||||||||||||| ||||||  || |||| || ||    
T  44275829 agtaattttacatcatatcatcaccctttttaatctcttctttcaatatttttggcacgtgtcacaaatgtgtgtgagtgtaaaatggtatatgccacct 44275730  T
Q  254 aagatggtttatgtataaga 273  Q
    ||| ||||||||||||||||    
T  44275729 aaggtggtttatgtataaga 44275710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 154 - 273
Target Start/End: Complemental strand, 3672397 - 3672278
Alignment:
Q  154 agtaatttcacatcacatcatcaccccttttaatctcttttttcaatgtttttgccacatgtcacaaatgtgtgtgagcgtaaaagagtgtatgtcatct 253  Q
    |||||||  |||||| |||||||||| |||| ||||||| |||||||||||||||||| |||||||||||||||||   ||||||| ||||||| || ||    
T  3672397 agtaattatacatcatatcatcaccctttttcatctcttctttcaatgtttttgccacgtgtcacaaatgtgtgtggatgtaaaagggtgtatgccacct 3672298  T
Q  254 aagatggtttatgtataaga 273  Q
    ||| ||||| ||||||||||    
T  3672297 aaggtggttcatgtataaga 3672278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 154 - 273
Target Start/End: Complemental strand, 6112753 - 6112634
Alignment:
Q  154 agtaatttcacatcacatcatcaccccttttaatctcttttttcaatgtttttgccacatgtcacaaatgtgtgtgagcgtaaaagagtgtatgtcatct 253  Q
    |||||||| |||||| ||||||| || |||| ||||||| |||||||||||||||||| |||||||||| |||||| | ||||||  ||||||| |||||    
T  6112753 agtaattttacatcatatcatcatcctttttcatctcttctttcaatgtttttgccacgtgtcacaaatatgtgtgggtgtaaaatggtgtatgccatct 6112654  T
Q  254 aagatggtttatgtataaga 273  Q
    ||| ||||| ||||||||||    
T  6112653 aaggtggttcatgtataaga 6112634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 154 - 273
Target Start/End: Complemental strand, 7217888 - 7217769
Alignment:
Q  154 agtaatttcacatcacatcatcaccccttttaatctcttttttcaatgtttttgccacatgtcacaaatgtgtgtgagcgtaaaagagtgtatgtcatct 253  Q
    |||||||| |||||| |||||||||| |||| ||||||| ||| |||||||||||||| ||||||||||||||||  | || |||| ||||||| || ||    
T  7217888 agtaattttacatcatatcatcacccttttttatctcttattttaatgtttttgccacgtgtcacaaatgtgtgtaggtgttaaagggtgtatgccacct 7217789  T
Q  254 aagatggtttatgtataaga 273  Q
    ||| ||||||||||||||||    
T  7217788 aaggtggtttatgtataaga 7217769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 154 - 273
Target Start/End: Original strand, 28093164 - 28093283
Alignment:
Q  154 agtaatttcacatcacatcatcaccccttttaatctcttttttcaatgtttttgccacatgtcacaaatgtgtgtgagcgtaaaagagtgtatgtcatct 253  Q
    |||| ||| |||||| |||||||||| |||| ||||||  |||||||||||||||||| ||||||||||||||||| | ||||||| ||||||| || ||    
T  28093164 agtatttttacatcatatcatcaccctttttcatctctcctttcaatgtttttgccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacct 28093263  T
Q  254 aagatggtttatgtataaga 273  Q
    ||| ||||| ||||||||||    
T  28093264 aaggtggttcatgtataaga 28093283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 154 - 273
Target Start/End: Complemental strand, 49243938 - 49243819
Alignment:
Q  154 agtaatttcacatcacatcatcaccccttttaatctcttttttcaatgtttttgccacatgtcacaaatgtgtgtgagcgtaaaagagtgtatgtcatct 253  Q
    |||||||| |||||| ||||||||   |||| ||||||| ||||||||||||||||||||||||||||||||||||   ||||||| ||||||| || ||    
T  49243938 agtaattttacatcatatcatcacttttttttatctcttctttcaatgtttttgccacatgtcacaaatgtgtgtggatgtaaaagggtgtatgccacct 49243839  T
Q  254 aagatggtttatgtataaga 273  Q
    ||| ||||| ||||||||||    
T  49243838 aaggtggttcatgtataaga 49243819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 154 - 273
Target Start/End: Original strand, 21391023 - 21391142
Alignment:
Q  154 agtaatttcacatcacatcatcaccccttttaatctcttttttcaatgtttttgccacatgtcacaaatgtgtgtgagcgtaaaagagtgtatgtcatct 253  Q
    |||||||| |||||| ||  |||| | |||| ||||||| ||||||| |||||||||| ||||||||||||||||| | ||||||| ||||||| |||||    
T  21391023 agtaattttacatcatatattcactcattttcatctcttctttcaatatttttgccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccatct 21391122  T
Q  254 aagatggtttatgtataaga 273  Q
    ||| ||||| ||||||||||    
T  21391123 aaggtggttcatgtataaga 21391142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 154 - 273
Target Start/End: Complemental strand, 35545035 - 35544916
Alignment:
Q  154 agtaatttcacatcacatcatcaccccttttaatctcttttttcaatgtttttgccacatgtcacaaatgtgtgtgagcgtaaaagagtgtatgtcatct 253  Q
    |||||||| |||||| ||||||||||||||| || |||| |||||||||||||||||| | |||||||||| ||||   ||||||  ||||||  || ||    
T  35545035 agtaattttacatcatatcatcacccctttttatatcttctttcaatgtttttgccacgtatcacaaatgtatgtggatgtaaaatggtgtataccacct 35544936  T
Q  254 aagatggtttatgtataaga 273  Q
    ||||||||| ||||||||||    
T  35544935 aagatggttcatgtataaga 35544916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 154 - 229
Target Start/End: Complemental strand, 51038887 - 51038811
Alignment:
Q  154 agtaatttcacatcacatcatcacccc-ttttaatctcttttttcaatgtttttgccacatgtcacaaatgtgtgtg 229  Q
    ||||||||||||||||| ||||||||| |||| ||||||| |||||||||||||| |||||||||||| ||||||||    
T  51038887 agtaatttcacatcacaccatcacccccttttcatctcttctttcaatgtttttgtcacatgtcacaattgtgtgtg 51038811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 233 - 273
Target Start/End: Complemental strand, 43245562 - 43245522
Alignment:
Q  233 gtaaaagagtgtatgtcatctaagatggtttatgtataaga 273  Q
    ||||||| |||||||||||||||||||||| ||||||||||    
T  43245562 gtaaaagggtgtatgtcatctaagatggttcatgtataaga 43245522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 156 - 272
Target Start/End: Complemental strand, 54849909 - 54849793
Alignment:
Q  156 taatttcacatcacatcatcaccccttttaatctcttttttcaatgtttttgccacatgtcacaaatgtgtgtgagcgtaaaagagtgtatgtcatctaa 255  Q
    ||||||||||||||||||||| ||  | | ||||||| ||||||| |||||| ||| |||||||| || ||||| |  | |||| ||||| |  ||||||    
T  54849909 taatttcacatcacatcatcatcctctctcatctcttctttcaatatttttgtcacttgtcacaactgcgtgtgggtatcaaagtgtgtacgctatctaa 54849810  T
Q  256 gatggtttatgtataag 272  Q
    | ||||| |||||||||    
T  54849809 ggtggttcatgtataag 54849793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 72; Significance: 1e-32; HSPs: 18)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 154 - 273
Target Start/End: Original strand, 46112012 - 46112131
Alignment:
Q  154 agtaatttcacatcacatcatcaccccttttaatctcttttttcaatgtttttgccacatgtcacaaatgtgtgtgagcgtaaaagagtgtatgtcatct 253  Q
    |||||||| |||||| |||||||||| |||| ||||||| ||||||||||||||||||||||||||||||||||||   ||||||  |||||||||| ||    
T  46112012 agtaattttacatcatatcatcaccctttttcatctcttctttcaatgtttttgccacatgtcacaaatgtgtgtggatgtaaaatggtgtatgtcacct 46112111  T
Q  254 aagatggtttatgtataaga 273  Q
    ||||||||| ||||||||||    
T  46112112 aagatggttcatgtataaga 46112131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 154 - 273
Target Start/End: Complemental strand, 21559684 - 21559565
Alignment:
Q  154 agtaatttcacatcacatcatcaccccttttaatctcttttttcaatgtttttgccacatgtcacaaatgtgtgtgagcgtaaaagagtgtatgtcatct 253  Q
    |||||||| |||||| ||||| |||| |||| ||||||| ||||||| |||||||||| ||||||||||||||||| | ||||||| ||||||| || ||    
T  21559684 agtaattttacatcatatcattaccctttttcatctcttctttcaatatttttgccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacct 21559585  T
Q  254 aagatggtttatgtataaga 273  Q
    ||||||||||||||||||||    
T  21559584 aagatggtttatgtataaga 21559565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 154 - 273
Target Start/End: Complemental strand, 36749529 - 36749410
Alignment:
Q  154 agtaatttcacatcacatcatcaccccttttaatctcttttttcaatgtttttgccacatgtcacaaatgtgtgtgagcgtaaaagagtgtatgtcatct 253  Q
    |||||||| |||||| |||||||||| |||| ||||||| |||||||||||||||||| ||||||||||||||||| | ||||||  ||||||| |||||    
T  36749529 agtaattttacatcatatcatcaccctttttcatctcttctttcaatgtttttgccacgtgtcacaaatgtgtgtgggtgtaaaaaggtgtatgacatct 36749430  T
Q  254 aagatggtttatgtataaga 273  Q
    ||| ||||| ||||||||||    
T  36749429 aaggtggttcatgtataaga 36749410  T

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Target: chr3; HSP #4
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 154 - 271
Target Start/End: Original strand, 39467169 - 39467286
Alignment:
Q  154 agtaatttcacatcacatcatcaccccttttaatctcttttttcaatgtttttgccacatgtcacaaatgtgtgtgagcgtaaaagagtgtatgtcatct 253  Q
    |||||||||| |||||||| ||||||||||| ||||||| ||||||| |||||| |||||||||||||| |||||| | ||||||| |||||||||||||    
T  39467169 agtaatttcatatcacatcctcaccccttttcatctcttctttcaatatttttggcacatgtcacaaatatgtgtgggtgtaaaagggtgtatgtcatct 39467268  T
Q  254 aagatggtttatgtataa 271  Q
    | | ||||||||| ||||    
T  39467269 atggtggtttatggataa 39467286  T

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Target: chr3; HSP #5
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 154 - 273
Target Start/End: Original strand, 34749966 - 34750085
Alignment:
Q  154 agtaatttcacatcacatcatcaccccttttaatctcttttttcaatgtttttgccacatgtcacaaatgtgtgtgagcgtaaaagagtgtatgtcatct 253  Q
    |||||||| |||||| |||||||||| |||| ||||||| |||||||||||||||||| |||||||||| |||||| | ||||||| ||||||| || ||    
T  34749966 agtaattttacatcatatcatcaccctttttcatctcttctttcaatgtttttgccacgtgtcacaaatatgtgtgggtgtaaaagggtgtatgccacct 34750065  T
Q  254 aagatggtttatgtataaga 273  Q
    ||| ||||| ||||||||||    
T  34750066 aaggtggttcatgtataaga 34750085  T

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Target: chr3; HSP #6
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 154 - 273
Target Start/End: Original strand, 36370406 - 36370525
Alignment:
Q  154 agtaatttcacatcacatcatcaccccttttaatctcttttttcaatgtttttgccacatgtcacaaatgtgtgtgagcgtaaaagagtgtatgtcatct 253  Q
    |||||||| |||||| |||||||||| |||| ||||||| |||||||||||||| ||||||||||||||||||||| | ||||||  ||||||| || ||    
T  36370406 agtaattttacatcatatcatcaccctttttcatctcttctttcaatgtttttgtcacatgtcacaaatgtgtgtgggtgtaaaaaggtgtatgacacct 36370505  T
Q  254 aagatggtttatgtataaga 273  Q
    ||| ||||| ||||||||||    
T  36370506 aaggtggttcatgtataaga 36370525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 154 - 273
Target Start/End: Complemental strand, 44000112 - 43999993
Alignment:
Q  154 agtaatttcacatcacatcatcaccccttttaatctcttttttcaatgtttttgccacatgtcacaaatgtgtgtgagcgtaaaagagtgtatgtcatct 253  Q
    |||||||| |||||| |||||||||| |||| ||||||| |||||||||||||||||| ||||||||||||||||| | ||||||  ||||||| || ||    
T  44000112 agtaattttacatcatatcatcaccctttttcatctcttctttcaatgtttttgccacgtgtcacaaatgtgtgtgggtgtaaaaaggtgtatgacacct 44000013  T
Q  254 aagatggtttatgtataaga 273  Q
    ||| ||||| ||||||||||    
T  44000012 aaggtggttcatgtataaga 43999993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 163 - 271
Target Start/End: Original strand, 39072350 - 39072458
Alignment:
Q  163 acatcacatcatcaccccttttaatctcttttttcaatgtttttgccacatgtcacaaatgtgtgtgagcgtaaaagagtgtatgtcatctaagatggtt 262  Q
    ||||||||||||||||| |||| ||||||| ||| ||||||| ||||||||||||||||||| |||| | ||||||| |||||||||||||||| || ||    
T  39072350 acatcacatcatcacccattttcatctcttcttttaatgtttatgccacatgtcacaaatgtatgtgggtgtaaaagggtgtatgtcatctaaggtgatt 39072449  T
Q  263 tatgtataa 271  Q
     ||||||||    
T  39072450 catgtataa 39072458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 154 - 273
Target Start/End: Complemental strand, 22894803 - 22894684
Alignment:
Q  154 agtaatttcacatcacatcatcaccccttttaatctcttttttcaatgtttttgccacatgtcacaaatgtgtgtgagcgtaaaagagtgtatgtcatct 253  Q
    |||||||  |||||| ||||||| || |||| ||||||| |||||||||||||||||| ||||||||||||||||| | ||||||| ||||||| || ||    
T  22894803 agtaattatacatcatatcatcatcctttttcatctcttctttcaatgtttttgccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacct 22894704  T
Q  254 aagatggtttatgtataaga 273  Q
    ||| ||||| ||||||||||    
T  22894703 aaggtggttcatgtataaga 22894684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 154 - 273
Target Start/End: Original strand, 51339851 - 51339968
Alignment:
Q  154 agtaatttcacatcacatcatcaccccttttaatctcttttttcaatgtttttgccacatgtcacaaatgtgtgtgagcgtaaaagagtgtatgtcatct 253  Q
    |||||||| |||||| |||||||||| |||| ||||||| |||||||||||||||||| |||||||||  |||||| | |||||||  |||||| || ||    
T  51339851 agtaattttacatcatatcatcaccctttttcatctcttctttcaatgtttttgccacgtgtcacaaa--tgtgtgggtgtaaaaggatgtatgccacct 51339948  T
Q  254 aagatggtttatgtataaga 273  Q
    ||| ||||||||||||||||    
T  51339949 aaggtggtttatgtataaga 51339968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 154 - 273
Target Start/End: Original strand, 30735564 - 30735682
Alignment:
Q  154 agtaatttcacatcacatcatcaccccttttaatctcttttttcaatgtttttgccacatgtcacaaatgtgtgtgagcgtaaaagagtgtatgtcatct 253  Q
    |||||||| |||||| |||||||||| ||||| | |||| |||||||||||||||||| ||||||| ||||||||| | ||||||| ||||||| |||||    
T  30735564 agtaatttaacatcatatcatcacccttttta-tatcttctttcaatgtttttgccacgtgtcacagatgtgtgtgggtgtaaaagggtgtatgccatct 30735662  T
Q  254 aagatggtttatgtataaga 273  Q
    ||| ||||| || |||||||    
T  30735663 aaggtggttcatatataaga 30735682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 181 - 273
Target Start/End: Complemental strand, 29460756 - 29460664
Alignment:
Q  181 ttttaatctcttttttcaatgtttttgccacatgtcacaaatgtgtgtgagcgtaaaagagtgtatgtcatctaagatggtttatgtataaga 273  Q
    |||| ||||||| |||||||||||||||||||||||||||| ||||||| | ||||||| ||||||| || ||||| ||||| ||||||||||    
T  29460756 ttttcatctcttctttcaatgtttttgccacatgtcacaaaagtgtgtgggtgtaaaagggtgtatgccacctaaggtggttcatgtataaga 29460664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 181 - 273
Target Start/End: Complemental strand, 29471608 - 29471516
Alignment:
Q  181 ttttaatctcttttttcaatgtttttgccacatgtcacaaatgtgtgtgagcgtaaaagagtgtatgtcatctaagatggtttatgtataaga 273  Q
    |||| ||||||| |||||||||||||||||||||||||||| ||||||| | ||||||| ||||||| || ||||| ||||| ||||||||||    
T  29471608 ttttcatctcttctttcaatgtttttgccacatgtcacaaaagtgtgtgggtgtaaaagggtgtatgccacctaaggtggttcatgtataaga 29471516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 189 - 273
Target Start/End: Complemental strand, 38231381 - 38231297
Alignment:
Q  189 tcttttttcaatgtttttgccacatgtcacaaatgtgtgtgagcgtaaaagagtgtatgtcatctaagatggtttatgtataaga 273  Q
    |||| |||||||||||||||||||||||||||||||||||| | ||||||| ||||||| || ||||| ||||| ||||||||||    
T  38231381 tcttctttcaatgtttttgccacatgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaaggtggttcatgtataaga 38231297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 274 - 327
Target Start/End: Complemental strand, 37067129 - 37067076
Alignment:
Q  274 ccgccagctcgagctacaaaacatgggttactttgcaagaattatggttggggt 327  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  37067129 ccgccagctggagctacaaaacatgggttactttgcaagaattatggttggggt 37067076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 154 - 269
Target Start/End: Original strand, 20856221 - 20856334
Alignment:
Q  154 agtaatttcacatcacatcatcaccccttttaatctcttttttcaatgtttttgccacatgtcacaaatgtgtgtgagcgtaaaagagtgtatgtcatct 253  Q
    |||||||| | |||||||||||| || ||||| | |||||| ||||||||||||||||||||||||||||||| || | ||||||| ||||||| || ||    
T  20856221 agtaattttatatcacatcatcatccttttta-tatctttt-tcaatgtttttgccacatgtcacaaatgtgtatgggtgtaaaagggtgtatgccacct 20856318  T
Q  254 aagatggtttatgtat 269  Q
    ||  ||||| ||||||    
T  20856319 aaagtggttcatgtat 20856334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 157 - 247
Target Start/End: Complemental strand, 53638255 - 53638165
Alignment:
Q  157 aatttcacatcacatcatcaccccttttaatctcttttttcaatgtttttgccacatgtcacaaatgtgtgtgagcgtaaaagagtgtatg 247  Q
    ||||| |||||||||||||||||| | | ||||||| |||| |||||||| ||||||||||| | |||||||| | || |||| |||||||    
T  53638255 aattttacatcacatcatcaccccctctcatctcttctttccatgtttttaccacatgtcacgattgtgtgtgggtgttaaagggtgtatg 53638165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 177 - 270
Target Start/End: Original strand, 29820390 - 29820483
Alignment:
Q  177 ccccttttaatctcttttttcaatgtttttgccacatgtcacaaatgtgtgtgagcgtaaaagagtgtatgtcatctaagatggtttatgtata 270  Q
    |||||| | ||||||| ||| ||||||||||| |||| |||||| ||| |||| | || |||| ||||||| || ||||| |||| ||||||||    
T  29820390 ccccttctcatctcttcttttaatgtttttgctacatctcacaattgtatgtgggtgtcaaagtgtgtatgccacctaaggtggtctatgtata 29820483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0062 (Bit Score: 71; Significance: 5e-32; HSPs: 1)
Name: scaffold0062
Description:

Target: scaffold0062; HSP #1
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 151 - 273
Target Start/End: Complemental strand, 6844 - 6722
Alignment:
Q  151 ttaagtaatttcacatcacatcatcaccccttttaatctcttttttcaatgtttttgccacatgtcacaaatgtgtgtgagcgtaaaagagtgtatgtca 250  Q
    ||||||||||| |||||| |||||||||| |||| ||||||| |||||||||||||||||| ||||||||||||||||| | ||||||| ||||||| ||    
T  6844 ttaagtaattttacatcatatcatcaccctttttcatctcttctttcaatgtttttgccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgcca 6745  T
Q  251 tctaagatggtttatgtataaga 273  Q
     ||||| ||||| ||||||||||    
T  6744 cctaaggtggttcatgtataaga 6722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0043 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: scaffold0043
Description:

Target: scaffold0043; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 181 - 273
Target Start/End: Original strand, 87259 - 87350
Alignment:
Q  181 ttttaatctcttttttcaatgtttttgccacatgtcacaaatgtgtgtgagcgtaaaagagtgtatgtcatctaagatggtttatgtataaga 273  Q
    |||| ||||||| |||||||||||||||||| ||||||||||||||||| | ||| ||| ||||||| || ||||| ||||| ||||||||||    
T  87259 ttttcatctcttctttcaatgtttttgccacgtgtcacaaatgtgtgtg-gtgtacaagggtgtatgccacctaaggtggttcatgtataaga 87350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0092 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0092
Description:

Target: scaffold0092; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 387 - 425
Target Start/End: Complemental strand, 23348 - 23310
Alignment:
Q  387 tttgtggtggttttcatggtggtgctgatactgggtctt 425  Q
    ||||||||||||| |||||||||||||||||| ||||||    
T  23348 tttgtggtggtttccatggtggtgctgatactaggtctt 23310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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