View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20577_low_11 (Length: 259)

Name: NF20577_low_11
Description: NF20577
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20577_low_11
NF20577_low_11
[»] chr4 (4 HSPs)
chr4 (21-249)||(23062259-23062487)
chr4 (32-249)||(32880670-32880874)
chr4 (90-175)||(43992238-43992323)
chr4 (78-172)||(19318834-19318928)
[»] chr2 (1 HSPs)
chr2 (21-249)||(28592866-28593093)
[»] chr6 (2 HSPs)
chr6 (21-249)||(25907261-25907489)
chr6 (96-199)||(21695849-21695952)
[»] chr8 (2 HSPs)
chr8 (21-249)||(21279261-21279489)
chr8 (94-203)||(28164880-28164989)
[»] chr5 (3 HSPs)
chr5 (162-249)||(30302015-30302101)
chr5 (132-178)||(14779531-14779577)
chr5 (96-172)||(20584724-20584800)
[»] chr7 (4 HSPs)
chr7 (78-228)||(9817132-9817282)
chr7 (78-228)||(10719057-10719207)
chr7 (159-205)||(20483935-20483981)
chr7 (90-178)||(21115432-21115520)
[»] chr1 (2 HSPs)
chr1 (78-228)||(15229641-15229790)
chr1 (81-210)||(10505307-10505436)
[»] scaffold0985 (1 HSPs)
scaffold0985 (94-196)||(438-540)
[»] scaffold0114 (1 HSPs)
scaffold0114 (94-203)||(26706-26815)
[»] chr3 (1 HSPs)
chr3 (96-202)||(34932178-34932284)


Alignment Details
Target: chr4 (Bit Score: 217; Significance: 1e-119; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 21 - 249
Target Start/End: Complemental strand, 23062487 - 23062259
Alignment:
21 tgtcggagtaaaggggctgcggctgatcctagtttgttgacaaacttgcgcaaacgcatgacacatttgatgattcaagaggataagtattggcgacagc 120  Q
    |||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
23062487 tgtcagagtcaaggggctgcggctgatcctagtttgttgacaaacttgcgcaaacgcatgacacatttgatgattcaagaggataagtattggcgacagc 23062388  T
121 gagcaaagacacactggtatcgtgatggtgacttgaataccaaattttttcatgcttcagccacgtcaagaaagaaggtaaaccgcattaattttttgga 220  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
23062387 gagcaaagacacactggtatcgtgatggtgacttgaataccaaattttttcatgcttcagccacgtcaagaaagaaggtaaaccgcattaattttttgga 23062288  T
221 taatgatgaaggggtacgaattgatgatg 249  Q
    ||||||||||||||||||||||| |||||    
23062287 taatgatgaaggggtacgaattgctgatg 23062259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 32 - 249
Target Start/End: Original strand, 32880670 - 32880874
Alignment:
32 aggggctgcggctgatcctagtttgttgacaaacttgcgcaaacgcatgacacatttgatgattcaagaggataagtattggcgacagcgagcaaagaca 131  Q
    ||||||||||||| |||||||||||||||||||||||||||             ||||||||||||||||||||||||| || |||||||||||||||||    
32880670 aggggctgcggcttatcctagtttgttgacaaacttgcgca-------------tttgatgattcaagaggataagtatgggtgacagcgagcaaagaca 32880756  T
132 cactggtatcgtgatggtgacttgaataccaaattttttcatgcttcagccacgtcaagaaagaaggtaaaccgcattaattttttggataatgatgaag 231  Q
    |||||||||| ||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||| ||||||    
32880757 cactggtatcatgatggtgacttgaataccaaatattttcatgcttcaaccacgtcaagaaagaaggtaaaccgcattaatgttttggataataatgaag 32880856  T
232 gggtacgaattgatgatg 249  Q
    |||||||||||| |||||    
32880857 gggtacgaattgctgatg 32880874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 90 - 175
Target Start/End: Complemental strand, 43992323 - 43992238
Alignment:
90 atgattcaagaggataagtattggcgacagcgagcaaagacacactggtatcgtgatggtgacttgaataccaaattttttcatgc 175  Q
    |||||||||||||||||||||||| ||||  ||||||| || || ||||||||||||||||| || ||||| || |||||||||||    
43992323 atgattcaagaggataagtattggagacaaagagcaaaaactcattggtatcgtgatggtgatttaaatacaaatttttttcatgc 43992238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 78 - 172
Target Start/End: Complemental strand, 19318928 - 19318834
Alignment:
78 atgacacatttgatgattcaagaggataagtattggcgacagcgagcaaagacacactggtatcgtgatggtgacttgaataccaaattttttca 172  Q
    ||||| || |||||||| ||||||||||| ||||||||||| || ||||| |  |||||||| |||||||||||  | || || |||||||||||    
19318928 atgactcagttgatgatacaagaggataaatattggcgacaacgtgcaaaaattcactggtaccgtgatggtgatctaaacacgaaattttttca 19318834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 205; Significance: 1e-112; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 21 - 249
Target Start/End: Complemental strand, 28593093 - 28592866
Alignment:
21 tgtcggagtaaaggggctgcggctgatcctagtttgttgacaaacttgcgcaaacgcatgacacatttgatgattcaagaggataagtattggcgacagc 120  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |    
28593093 tgtcggagtcaaggggctgcggctgatcctagtttgttgacaaacttgcgcaaacgcatgacacatttgat-attcaagaggataagtattggcgacaac 28592995  T
121 gagcaaagacacactggtatcgtgatggtgacttgaataccaaattttttcatgcttcagccacgtcaagaaagaaggtaaaccgcattaattttttgga 220  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
28592994 gagcaaagacacactggtatcgtgatggtgacttgaataccaaattttttcatgcttcagccacgtcaagaaagaagataaaccgcattaattttttgga 28592895  T
221 taatgatgaaggggtacgaattgatgatg 249  Q
    ||||||||||||||||||||||| |||||    
28592894 taatgatgaaggggtacgaattgctgatg 28592866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 201; Significance: 1e-110; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 21 - 249
Target Start/End: Complemental strand, 25907489 - 25907261
Alignment:
21 tgtcggagtaaaggggctgcggctgatcctagtttgttgacaaacttgcgcaaacgcatgacacatttgatgattcaagaggataagtattggcgacagc 120  Q
    |||||||||  ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
25907489 tgtcggagtcgaggggttgcggctgatcctagtttgttgacaaacttgcgcaaacgcatgacacatttgatgattcaagaggataagtattggcgacagc 25907390  T
121 gagcaaagacacactggtatcgtgatggtgacttgaataccaaattttttcatgcttcagccacgtcaagaaagaaggtaaaccgcattaattttttgga 220  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||    
25907389 gagcaaagacacacttgtatcgtgatggtgacttgaataccaaatttcttcatgcttcagccatgtcaagaaagaaggtaaaccgcattaattttttgga 25907290  T
221 taatgatgaaggggtacgaattgatgatg 249  Q
    ||||||||||||||||||||||| |||||    
25907289 taatgatgaaggggtacgaattgctgatg 25907261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 96 - 199
Target Start/End: Original strand, 21695849 - 21695952
Alignment:
96 caagaggataagtattggcgacagcgagcaaagacacactggtatcgtgatggtgacttgaataccaaattttttcatgcttcagccacgtcaagaaaga 195  Q
    |||||||||| ||| ||| ||||  |||| || || ||||||||||||||||| || |||||||| | ||| ||||||||  |||| || ||||||||||    
21695849 caagaggatatgtactggtgacaaagagccaaaactcactggtatcgtgatggagatttgaatacgagattctttcatgcggcagcaacttcaagaaaga 21695948  T
196 aggt 199  Q
    ||||    
21695949 aggt 21695952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 133; Significance: 3e-69; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 21 - 249
Target Start/End: Complemental strand, 21279489 - 21279261
Alignment:
21 tgtcggagtaaaggggctgcggctgatcctagtttgttgacaaacttgcgcaaacgcatgacacatttgatgattcaagaggataagtattggcgacagc 120  Q
    ||||||||| |||||||||||| |||||||||||| |||||||||||||| ||||||||||| || |||||||||||||| ||||| |||||||| || |    
21279489 tgtcggagtcaaggggctgcggttgatcctagttttttgacaaacttgcggaaacgcatgacgcaattgatgattcaagaagataactattggcggcaac 21279390  T
121 gagcaaagacacactggtatcgtgatggtgacttgaataccaaattttttcatgcttcagccacgtcaagaaagaaggtaaaccgcattaattttttgga 220  Q
    |||| |||||||| |||||||||||||||||| ||||||| |||   |||||||| |||||||| ||||||||||||||||||| |||||||||| ||||    
21279389 gagctaagacacattggtatcgtgatggtgacgtgaatacaaaaaaatttcatgcatcagccacatcaagaaagaaggtaaaccacattaattttctgga 21279290  T
221 taatgatgaaggggtacgaattgatgatg 249  Q
    |||||||||| |||||||| ||| |||||    
21279289 taatgatgaacgggtacgagttgctgatg 21279261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 94 - 203
Target Start/End: Complemental strand, 28164989 - 28164880
Alignment:
94 ttcaagaggataagtattggcgacagcgagcaaagacacactggtatcgtgatggtgacttgaataccaaattttttcatgcttcagccacgtcaagaaa 193  Q
    |||||||||||| ||||||| ||||| |||| || |||||||||||||||||||| ||| | || |||||| | || |||||||| || || || |||||    
28164989 ttcaagaggatatgtattggagacagagagctaaaacacactggtatcgtgatggagacctaaacaccaaaatcttccatgcttccgcaacctccagaaa 28164890  T
194 gaaggtaaac 203  Q
    ||| ||||||    
28164889 gaaagtaaac 28164880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 76; Significance: 3e-35; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 162 - 249
Target Start/End: Original strand, 30302015 - 30302101
Alignment:
162 aaattttttcatgcttcagccacgtcaagaaagaaggtaaaccgcattaattttttggataatgatgaaggggtacgaattgatgatg 249  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||    
30302015 aaattttttcatgcttcagccacgtcaagaaaga-ggtaaaccgcattaattttttggataatgatgaaggggtacgaattgctgatg 30302101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 132 - 178
Target Start/End: Original strand, 14779531 - 14779577
Alignment:
132 cactggtatcgtgatggtgacttgaataccaaattttttcatgcttc 178  Q
    ||||||||||||||||| |||||||| ||||| |||||| |||||||    
14779531 cactggtatcgtgatggggacttgaacaccaattttttttatgcttc 14779577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 96 - 172
Target Start/End: Original strand, 20584724 - 20584800
Alignment:
96 caagaggataagtattggcgacagcgagcaaagacacactggtatcgtgatggtgacttgaataccaaattttttca 172  Q
    |||||||||| ||||||||||||  |||| || || ||||||||||| |||||  ||||||| || ||||| |||||    
20584724 caagaggatatgtattggcgacaaagagccaaaactcactggtatcgcgatggatacttgaacacgaaattctttca 20584800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 67; Significance: 7e-30; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 78 - 228
Target Start/End: Complemental strand, 9817282 - 9817132
Alignment:
78 atgacacatttgatgattcaagaggataagtattggcgacagcgagcaaagacacactggtatcgtgatggtgacttgaataccaaattttttcatgctt 177  Q
    |||||||| ||||||||| || |||| ||||||||  | || ||||| ||||| ||||||||||||||||||||| | || || |||  ||||||||||     
9817282 atgacacacttgatgattaaataggacaagtattgatggcatcgagctaagactcactggtatcgtgatggtgaccttaacactaaaaattttcatgctg 9817183  T
178 cagccacgtcaagaaagaaggtaaaccgcattaattttttggataatgatg 228  Q
    |||||||||| ||||| ||||||||||| |||||||||||||| |||||||    
9817182 cagccacgtctagaaaaaaggtaaaccgtattaattttttggaaaatgatg 9817132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 78 - 228
Target Start/End: Complemental strand, 10719207 - 10719057
Alignment:
78 atgacacatttgatgattcaagaggataagtattggcgacagcgagcaaagacacactggtatcgtgatggtgacttgaataccaaattttttcatgctt 177  Q
    |||||||| ||||||||| || |||| ||||||||  | || ||||| ||||| ||||||||||||||||||||| | || || |||  ||||||||||     
10719207 atgacacacttgatgattaaataggacaagtattgatggcatcgagctaagactcactggtatcgtgatggtgaccttaacactaaaaattttcatgctg 10719108  T
178 cagccacgtcaagaaagaaggtaaaccgcattaattttttggataatgatg 228  Q
    |||||||||| ||||| ||||||||||| |||||||||||||| |||||||    
10719107 cagccacgtctagaaaaaaggtaaaccgtattaattttttggaaaatgatg 10719057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 159 - 205
Target Start/End: Original strand, 20483935 - 20483981
Alignment:
159 accaaattttttcatgcttcagccacgtcaagaaagaaggtaaaccg 205  Q
    |||||||||||||||||||| |||||||  ||||| |||||||||||    
20483935 accaaattttttcatgcttctgccacgtttagaaaaaaggtaaaccg 20483981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 90 - 178
Target Start/End: Original strand, 21115432 - 21115520
Alignment:
90 atgattcaagaggataagtattggcgacagcgagcaaagacacactggtatcgtgatggtgacttgaataccaaattttttcatgcttc 178  Q
    ||||| ||||| ||||| |||||||| ||||| || || || || |||||||||||||||||  | || || || ||||||||||||||    
21115432 atgatacaagaagataaatattggcgtcagcgtgcgaaaactcattggtatcgtgatggtgatctaaacacgaagttttttcatgcttc 21115520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 51; Significance: 3e-20; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 78 - 228
Target Start/End: Original strand, 15229641 - 15229790
Alignment:
78 atgacacatttgatgattcaagaggataagtattggcgacagcgagcaaagacacactggtatcgtgatggtgacttgaataccaaattttttcatgctt 177  Q
    ||||| || ||||| ||||||||||||||||||||||| ||||| || ||||| || ||||| ||| |||||||| | ||||| |||    || ||||||    
15229641 atgacgcacttgattattcaagaggataagtattggcggcagcgtgctaagactcattggtaccgt-atggtgaccttaatactaaaaaaattgatgctt 15229739  T
178 cagccacgtcaagaaagaaggtaaaccgcattaattttttggataatgatg 228  Q
    ||||||| ||  |||| ||||||||||| |||||||||||||| |||||||    
15229740 cagccacatcttgaaaaaaggtaaaccgtattaattttttggaaaatgatg 15229790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 81 - 210
Target Start/End: Complemental strand, 10505436 - 10505307
Alignment:
81 acacatttgatgattcaagaggataagtattggcgacagcgagcaaagacacactggtatcgtgatggtgacttgaataccaaattttttcatgcttcag 180  Q
    |||||| ||||||||||||| ||||| |||||| | || ||||| ||||  || |||||||||| ||| ||  ||||||| |||||||||||||| ||      
10505436 acacatctgatgattcaagaagataaatattggaggcaacgagccaagatccattggtatcgtgttggcgatatgaatactaaattttttcatgcctcta 10505337  T
181 ccacgtcaagaaagaaggtaaaccgcatta 210  Q
    |||| || | |||||||||||||| |||||    
10505336 ccacatctaaaaagaaggtaaaccacatta 10505307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0985 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: scaffold0985
Description:

Target: scaffold0985; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 94 - 196
Target Start/End: Complemental strand, 540 - 438
Alignment:
94 ttcaagaggataagtattggcgacagcgagcaaagacacactggtatcgtgatggtgacttgaataccaaattttttcatgcttcagccacgtcaagaaa 193  Q
    ||||||| || | ||||||| | ||| |||| |||||||||||||| |||||||| ||| | ||||||||||| ||||||||||| || || || |||||    
540 ttcaagaagacatgtattggaggcagagagctaagacacactggtaccgtgatggagaccttaataccaaattctttcatgcttccgcaacctccagaaa 441  T
194 gaa 196  Q
    |||    
440 gaa 438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0114 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0114
Description:

Target: scaffold0114; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 94 - 203
Target Start/End: Complemental strand, 26815 - 26706
Alignment:
94 ttcaagaggataagtattggcgacagcgagcaaagacacactggtatcgtgatggtgacttgaataccaaattttttcatgcttcagccacgtcaagaaa 193  Q
    ||||||| |||| ||||||| | ||| |||| || |||||||||||||||||||| ||| | ||||||||||| || || ||||| || || ||  ||||    
26815 ttcaagaagatatgtattggaggcagagagctaaaacacactggtatcgtgatggagacctaaataccaaattcttccacgcttccgcaacctcctgaaa 26716  T
194 gaaggtaaac 203  Q
    ||| ||||||    
26715 gaaagtaaac 26706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 96 - 202
Target Start/End: Original strand, 34932178 - 34932284
Alignment:
96 caagaggataagtattggcgacagcgagcaaagacacactggtatcgtgatggtgacttgaataccaaattttttcatgcttcagccacgtcaagaaaga 195  Q
    |||||||||| ||||||| ||||| |||| || || |||| |||||||||||| ||| |||| || ||||| || ||||| || || || || |||||||    
34932178 caagaggatatgtattggagacagagagctaaaacgcacttgtatcgtgatggagacctgaacacaaaattcttccatgcgtccgcaacctccagaaaga 34932277  T
196 aggtaaa 202  Q
    | |||||    
34932278 aagtaaa 34932284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University