View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20577_low_3 (Length: 468)
Name: NF20577_low_3
Description: NF20577
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20577_low_3 |
 | |
|
| [»] scaffold0645 (1 HSPs) |
| | |
|
| [»] scaffold0041 (1 HSPs) |
| | |
|
Alignment Details
Target: chr3 (Bit Score: 242; Significance: 1e-134; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 200 - 452
Target Start/End: Original strand, 29533419 - 29533672
Alignment:
| Q |
200 |
gtcgtttctttgggtatcactactatgctagggttagttttctccattgagtggagagtgtgattcttccactaggaatcattaatacgtttctctcctt |
299 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
29533419 |
gtcgtttctttgggtatcactactatgctagggttagttttctccattgagtggagagtgtgattcttccactaggaatcattaacacgtttctctcctt |
29533518 |
T |
|
| Q |
300 |
cccaaaggtcccctttgcctccatttgcatctattcccttcaatctttgagtcctaagaatgaaccatttctttga-ttttttgccttttaaggtttgtg |
398 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
29533519 |
cccaaaggtcccctttgcctccatttgcatctattcccttcaatctttgagtcctaagaatgaaccatttctttgatttttttgccttttaaggtttgtg |
29533618 |
T |
|
| Q |
399 |
cttcaatccttattggtctcttactctcttatacggtggtggtattgtgccatc |
452 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29533619 |
cttcaatccttattggtctcttactctcttatacggtggtggtattgtgccatc |
29533672 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 150; E-Value: 4e-79
Query Start/End: Original strand, 1 - 189
Target Start/End: Complemental strand, 29533121 - 29532930
Alignment:
| Q |
1 |
tcatcaaattaattagttttaggttttttctaaattgctttgggaaagaggtgggtaaac---ccatcttgacgtggcatcactataacatggacaacag |
97 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||| | ||||||||||| ||||||||||||||||||||||| |
|
|
| T |
29533121 |
tcatcaaattaattagttttaggttttttctaaattaccttgggaaagaggtgggtaaactgcctatcttgacgtgacatcactataacatggacaacag |
29533022 |
T |
|
| Q |
98 |
taatccacaatataaaatggatgaggagatgggtttgatatattgacccggtatacttttgttgttagcagattgactcattaattaatttt |
189 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||| |
|
|
| T |
29533021 |
taatccacaatataaaatggacgaggagatgggtttgatatattgacccggtatacttttgttattagcagattgacccattaattaatttt |
29532930 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 22 - 190
Target Start/End: Complemental strand, 11560509 - 11560338
Alignment:
| Q |
22 |
ggttttttctaaattgctttgggaaagaggtgggtaaac---ccatcttgacgtggcatcactataacatggacaacagtaatccacaatataaaatgga |
118 |
Q |
| |
|
||||||||||||||| | ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
11560509 |
ggttttttctaaattaccttgggaaagaggtgggtaaactgcccatcttgacgtggcatcactataacatggacaacagtaatccacaataaaaaatgga |
11560410 |
T |
|
| Q |
119 |
tgaggagatgggtttgatatattgacccggtatacttttgttgttagcagattgactcattaattaattttc |
190 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||| ||||||||||||| ||||||||||||||| |
|
|
| T |
11560409 |
cgaggagatgggtttgatatattgaccaggtatacttttgttattagcagattgacccattaattaattttc |
11560338 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 118; E-Value: 5e-60
Query Start/End: Original strand, 22 - 190
Target Start/End: Complemental strand, 46044777 - 46044606
Alignment:
| Q |
22 |
ggttttttctaaattgctttgggaaagaggtgggtaaac---ccatcttgacgtggcatcactataacatggacaacagtaatccacaatataaaatgga |
118 |
Q |
| |
|
|||||||||||| |||| ||||||||||||||||||||| |||||||||||||||| |||||||| |||||||||| |||||||||||| |||||||| |
|
|
| T |
46044777 |
ggttttttctaacttgccttgggaaagaggtgggtaaactgcccatcttgacgtggcagcactataatatggacaacaataatccacaataaaaaatgga |
46044678 |
T |
|
| Q |
119 |
tgaggagatgggtttgatatattgacccggtatacttttgttgttagcagattgactcattaattaattttc |
190 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||| |
|
|
| T |
46044677 |
cgaggagatgagtttgatatattgacccggtatacttttgttattagcagattgacccattaattaattttc |
46044606 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0645 (Bit Score: 130; Significance: 3e-67; HSPs: 1)
Name: scaffold0645
Description:
Target: scaffold0645; HSP #1
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 22 - 190
Target Start/End: Original strand, 2186 - 2357
Alignment:
| Q |
22 |
ggttttttctaaattgctttgggaaagaggtgggtaaac---ccatcttgacgtggcatcactataacatggacaacagtaatccacaatataaaatgga |
118 |
Q |
| |
|
||||||||||||||| | ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
2186 |
ggttttttctaaattaccttgggaaagaggtgggtaaactgcccatcttgacgtggcatcactataacatggacaacagtaatccacaataaaaaatgga |
2285 |
T |
|
| Q |
119 |
tgaggagatgggtttgatatattgacccggtatacttttgttgttagcagattgactcattaattaattttc |
190 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||| ||||||||||||| ||||||||||||||| |
|
|
| T |
2286 |
cgaggagatgggtttgatatattgaccaggtatacttttgttattagcagattgacccattaattaattttc |
2357 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0041 (Bit Score: 127; Significance: 2e-65; HSPs: 1)
Name: scaffold0041
Description:
Target: scaffold0041; HSP #1
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 21 - 190
Target Start/End: Original strand, 65067 - 65239
Alignment:
| Q |
21 |
aggttttttctaaattgctttgggaaagaggtgggtaaac---ccatcttgacgtggcatcactataacatggacaacagtaatccacaatataaaatgg |
117 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||| |
|
|
| T |
65067 |
aggttttttctaaattgccttgggaaagaggtgggtaaactgcccatcttgacgtggcatcactataacatggacagcagtaatccacaataaaaaatgg |
65166 |
T |
|
| Q |
118 |
atgaggagatgggtttgatatattgacccggtatacttttgttgttagcagattgactcattaattaattttc |
190 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||||||||||| |||||||||| | ||||||||||||||| |
|
|
| T |
65167 |
acgaggagatgggtttgatatattgacccggtatacttttgttattagcagattaatccattaattaattttc |
65239 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 127; Significance: 2e-65; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 21 - 189
Target Start/End: Original strand, 38082674 - 38082846
Alignment:
| Q |
21 |
aggttttttctaaattgctttgggaaagaggtgggtaaac---ccatcttgacgtggcatcactataacatggacaacagtaatccacaatataaaatgg |
117 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||| |
|
|
| T |
38082674 |
aggttttttctaaattgccttgggaaagaggtgggtaaactgcccatcttgacgtggcatcactataacatggataacagtaatccacaataaaaaatgg |
38082773 |
T |
|
| Q |
118 |
atgaggagatgggtttgatatattgacccggtatac-ttttgttgttagcagattgactcattaattaatttt |
189 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||| ||||||| ||||||||||||| |||||||||||||| |
|
|
| T |
38082774 |
acgaggagatgggtttgatatattgacccggtatactttttgttattagcagattgacccattaattaatttt |
38082846 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 126; E-Value: 8e-65
Query Start/End: Original strand, 22 - 190
Target Start/End: Original strand, 22972829 - 22973000
Alignment:
| Q |
22 |
ggttttttctaaattgctttgggaaagaggtgggtaaac---ccatcttgacgtggcatcactataacatggacaacagtaatccacaatataaaatgga |
118 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
22972829 |
ggttttttctaaattgccttgggaaagaggtgggtaaactgcccatcttgacgtggcatcactataacatggacaacagtaatccacaataaaaaatgga |
22972928 |
T |
|
| Q |
119 |
tgaggagatgggtttgatatattgacccggtatacttttgttgttagcagattgactcattaattaattttc |
190 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||| |||||| ||||| ||||||||||||||| |
|
|
| T |
22972929 |
cgaggagatgggtttgatatattgatccggtatacttttgttattagcatattgatccattaattaattttc |
22973000 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 121; E-Value: 8e-62
Query Start/End: Original strand, 22 - 189
Target Start/End: Complemental strand, 8206129 - 8205959
Alignment:
| Q |
22 |
ggttttttctaaattgctttgggaaagaggtgggtaaac---ccatcttgacgtggcatcactataacatggacaacagtaatccacaatataaaatgga |
118 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||| ||||| || |
|
|
| T |
8206129 |
ggttttttctaaattgccttgggaaagaggtgggtaaactgcccatcttgacgtggcatcgctataacatggacaacagtaatccacaataaaaaattga |
8206030 |
T |
|
| Q |
119 |
tgaggagatgggtttgatatattgacccggtatacttttgttgttagcagattgactcattaattaatttt |
189 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| | ||||||||||| |||||||| ||||| |
|
|
| T |
8206029 |
cgaggagatgggtttgatatattgacccggtatacttttgttatcagcagattgacccattaattgatttt |
8205959 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 127; Significance: 2e-65; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 21 - 190
Target Start/End: Complemental strand, 40908027 - 40907855
Alignment:
| Q |
21 |
aggttttttctaaattgctttgggaaagaggtgggtaaac---ccatcttgacgtggcatcactataacatggacaacagtaatccacaatataaaatgg |
117 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||| |
|
|
| T |
40908027 |
aggttttttctaaattgccttgggaaagaggtgggtaaactgcccatcttgacgtggcatcactataacatggacagcagtaatccacaataaaaaatgg |
40907928 |
T |
|
| Q |
118 |
atgaggagatgggtttgatatattgacccggtatacttttgttgttagcagattgactcattaattaattttc |
190 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||||||||||| |||||||||| | ||||||||||||||| |
|
|
| T |
40907927 |
acgaggagatgggtttgatatattgacccggtatacttttgttattagcagattaatccattaattaattttc |
40907855 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 111 - 188
Target Start/End: Complemental strand, 32257971 - 32257894
Alignment:
| Q |
111 |
aaaatggatgaggagatgggtttgatatattgacccggtatacttttgttgttagcagattgactcattaattaattt |
188 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||| ||||||||| ||||||||||||| ||||||||||||| |
|
|
| T |
32257971 |
aaaatggacgaggagatgggtttgatatattgacccggtaaacttttgttattagcagattgacccattaattaattt |
32257894 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 114; Significance: 1e-57; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 21 - 185
Target Start/End: Original strand, 42808938 - 42809105
Alignment:
| Q |
21 |
aggttttttctaaattgctttgggaaagaggtgggtaaa---cccatcttgacgtggcatcactataacatggacaacagtaatccacaatataaaatgg |
117 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||| ||||||||||||| ||||||| |
|
|
| T |
42808938 |
aggttttttctaacttgctttgggaaagaggtgggtaaattacccatcttgaggtggcatcactataacatggacaactgtaatccacaataaaaaatgg |
42809037 |
T |
|
| Q |
118 |
atgaggagatgggtttgatatattgacccggtatacttttgttgttagcagattgactcattaattaa |
185 |
Q |
| |
|
| ||||||||| ||||||||||||||| |||||||||||||| ||||||||||||| |||||||||| |
|
|
| T |
42809038 |
actaggagatggatttgatatattgacctggtatacttttgttattagcagattgacccattaattaa |
42809105 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 113; Significance: 5e-57; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 113; E-Value: 5e-57
Query Start/End: Original strand, 22 - 189
Target Start/End: Original strand, 13432403 - 13432573
Alignment:
| Q |
22 |
ggttttttctaaattgctttgggaaagaggtgggtaaacc---catcttgacgtggcatcactataacatggacaacagtaatccacaatataaaatgga |
118 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||| ||||||| |||||||| |
|
|
| T |
13432403 |
ggttttttctaaattgtcttgggaaagaggtgggtaaactgctcatcttaacgtggcatcactataacatggacaacagtaattcacaataaaaaatgga |
13432502 |
T |
|
| Q |
119 |
tgaggagatgggtttgatatattgacccggtatacttttgttgttagcagattgactcattaattaatttt |
189 |
Q |
| |
|
||||||||| ||||||||||||||||| ||||||||||||| ||||||||||||| |||||||||||||| |
|
|
| T |
13432503 |
cgaggagatgagtttgatatattgacccagtatacttttgttattagcagattgacccattaattaatttt |
13432573 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 113; Significance: 5e-57; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 113; E-Value: 5e-57
Query Start/End: Original strand, 22 - 185
Target Start/End: Original strand, 17751797 - 17751963
Alignment:
| Q |
22 |
ggttttttctaaattgctttgggaaagaggtgggtaaac---ccatcttgacgtggcatcactataacatggacaacagtaatccacaatataaaatgga |
118 |
Q |
| |
|
|||||||||||| |||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||| ||| | |||||||| |
|
|
| T |
17751797 |
ggttttttctaacttgccttgggaaagaggtgggtaaactacccatcttgacgtggcatcactataacatggacaactgtaatctacaccaaaaaatgga |
17751896 |
T |
|
| Q |
119 |
tgaggagatgggtttgatatattgacccggtatacttttgttgttagcagattgactcattaattaa |
185 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||| |
|
|
| T |
17751897 |
ttaggagatgggtttgatatattgacccggtatacttttgttattagcagattgacccattaattaa |
17751963 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 101; E-Value: 7e-50
Query Start/End: Original strand, 22 - 185
Target Start/End: Original strand, 1533587 - 1533752
Alignment:
| Q |
22 |
ggttttttctaaattgctttgggaaagaggtgggtaaac---ccatcttgacgtggcatcactataacatggacaacagtaatccacaatataaaatgga |
118 |
Q |
| |
|
|||||||||||| |||| ||||||||||||||||||||| |||||||||||||||||||| |||||||||||||| |||||| ||| | |||||||| |
|
|
| T |
1533587 |
ggttttttctaacttgccttgggaaagaggtgggtaaactacccatcttgacgtggcatcac-ataacatggacaactgtaatctacaccaaaaaatgga |
1533685 |
T |
|
| Q |
119 |
tgaggagatgggtttgatatattgacccggtatacttttgttgttagcagattgactcattaattaa |
185 |
Q |
| |
|
| ||||||||| |||||||||||||||||||||||||||||| ||||||||||||| |||||||||| |
|
|
| T |
1533686 |
ttaggagatggatttgatatattgacccggtatacttttgttattagcagattgacccattaattaa |
1533752 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 111; Significance: 8e-56; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 111; E-Value: 8e-56
Query Start/End: Original strand, 21 - 190
Target Start/End: Complemental strand, 19880425 - 19880253
Alignment:
| Q |
21 |
aggttttttctaaattgctttgggaaagaggtgggtaaaccc---atcttgacgtggcatcactataacatggacaacagtaatccacaatataaaatgg |
117 |
Q |
| |
|
||||||||||||| |||| ||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||| |||| |||||| ||||||| |
|
|
| T |
19880425 |
aggttttttctaacttgccttgggaatgaggtgggtaaaccgccaatcttgacgtggcatcactataacatggacaacagcaatctacaataaaaaatgg |
19880326 |
T |
|
| Q |
118 |
atgaggagatgggtttgatatattgacccggtatacttttgttgttagcagattgactcattaattaattttc |
190 |
Q |
| |
|
| ||||||||||||||||||||||||||| ||||||||||||| ||||||||||||| |||||||||| |||| |
|
|
| T |
19880325 |
acgaggagatgggtttgatatattgacccagtatacttttgttattagcagattgacccattaattaaatttc |
19880253 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 221 - 260
Target Start/End: Original strand, 8054092 - 8054131
Alignment:
| Q |
221 |
actatgctagggttagttttctccattgagtggagagtgt |
260 |
Q |
| |
|
|||||| ||| ||||||||||||||||||||||||||||| |
|
|
| T |
8054092 |
actatgttagagttagttttctccattgagtggagagtgt |
8054131 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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