View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20577_low_4 (Length: 428)

Name: NF20577_low_4
Description: NF20577
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20577_low_4
NF20577_low_4
[»] chr6 (5 HSPs)
chr6 (225-415)||(21006202-21006392)
chr6 (25-176)||(21006646-21006797)
chr6 (295-413)||(20903488-20903606)
chr6 (295-413)||(20922088-20922206)
chr6 (194-222)||(21006543-21006571)
[»] chr1 (1 HSPs)
chr1 (295-412)||(41336647-41336764)
[»] scaffold0557 (2 HSPs)
scaffold0557 (295-392)||(5327-5424)
scaffold0557 (295-387)||(5628-5720)
[»] scaffold0442 (2 HSPs)
scaffold0442 (295-387)||(9043-9135)
scaffold0442 (295-349)||(8735-8789)
[»] scaffold0115 (1 HSPs)
scaffold0115 (295-392)||(47180-47277)


Alignment Details
Target: chr6 (Bit Score: 155; Significance: 4e-82; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 155; E-Value: 4e-82
Query Start/End: Original strand, 225 - 415
Target Start/End: Complemental strand, 21006392 - 21006202
Alignment:
Q  225 ctaaattcgaatatattggtgcttattcccaaggtgtcgggtgctcagaccatggaagacgtccgaccatttgcattggaacattagctacttcagcatt 324  Q
    |||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||  ||||||||||||||||||||||||||||||    
T  21006392 ctaaattcgaatatattggtgcttattcccaaggtgtcaggtgcttagaccatggaagacgtccgacctattgcattggaacattagctacttcagcatt 21006293  T
Q  325 agacactttgtagtgatagtagctagctgcaaccccttgttggccataaaaactttggtccatctgaggctgcatgttttggttaaatctg 415  Q
    |  ||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  21006292 atgcactttgtagtgatagtagctatttgcaaccccttgttggccataaaaactttggtccatttgaggctgcatgttttggttaaatctg 21006202  T

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Target: chr6; HSP #2
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 25 - 176
Target Start/End: Complemental strand, 21006797 - 21006646
Alignment:
Q  25 aagcaaaggaccagaattttattcattgggactgtaacacggcttattttcatagagttgcgaaaacccacgcactctctaaaattatgtcggttttaca 124  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21006797 aagcaagggaccagaattttattcattgggactgtaacacggcttattttcatagagttgcgaaaacccacgcactctctaaaattatgtcggttttaca 21006698  T
Q  125 tgatggggacaccgttattacatatgcttcagctattgagatgcctgttctt 176  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  21006697 tgatggggacaccgttattacatatgcttcagctattgagatgcatgttctt 21006646  T

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Target: chr6; HSP #3
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 295 - 413
Target Start/End: Complemental strand, 20903606 - 20903488
Alignment:
Q  295 ttgcattggaacattagctacttcagcattagacactttgtagtgatagtagctagctgcaaccccttgttggccataaaaactttggtccatctgaggc 394  Q
    |||||||||||||||||||||||||| ||||| ||||||| ||||||||||||||  || | ||||||||||  |||| ||| |||| ||||| ||| ||    
T  20903606 ttgcattggaacattagctacttcagtattaggcactttgcagtgatagtagctatttggacccccttgttgcgcatagaaattttgatccatttgatgc 20903507  T
Q  395 tgcatgttttggttaaatc 413  Q
    |||||||||||||||||||    
T  20903506 tgcatgttttggttaaatc 20903488  T

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Target: chr6; HSP #4
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 295 - 413
Target Start/End: Complemental strand, 20922206 - 20922088
Alignment:
Q  295 ttgcattggaacattagctacttcagcattagacactttgtagtgatagtagctagctgcaaccccttgttggccataaaaactttggtccatctgaggc 394  Q
    ||||||||||||||||||||||||||||| |  ||||||| | ||||| ||||||  |||| ||||||||||  |||| ||| |||| ||||| ||| ||    
T  20922206 ttgcattggaacattagctacttcagcatcacgcactttgcaatgataatagctatttgcacccccttgttgcgcatagaaattttgatccatttgatgc 20922107  T
Q  395 tgcatgttttggttaaatc 413  Q
    |||||||||||||||||||    
T  20922106 tgcatgttttggttaaatc 20922088  T

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Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 194 - 222
Target Start/End: Complemental strand, 21006571 - 21006543
Alignment:
Q  194 tatggtgactgatgcagataatgctgagt 222  Q
    |||||||||||||||||||||||||||||    
T  21006571 tatggtgactgatgcagataatgctgagt 21006543  T

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Target: chr1 (Bit Score: 66; Significance: 5e-29; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 295 - 412
Target Start/End: Complemental strand, 41336764 - 41336647
Alignment:
Q  295 ttgcattggaacattagctacttcagcattagacactttgtagtgatagtagctagctgcaaccccttgttggccataaaaactttggtccatctgaggc 394  Q
    |||||||||||||||||||||||||||||||  ||||||||||| ||| |||||| ||||| ||||||||||  |||| ||| |||| ||||| ||| ||    
T  41336764 ttgcattggaacattagctacttcagcattacgcactttgtagttataatagctatctgcacccccttgttgcgcatagaaattttgatccatttgatgc 41336665  T
Q  395 tgcatgttttggttaaat 412  Q
    ||||||||||||||||||    
T  41336664 tgcatgttttggttaaat 41336647  T

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Target: scaffold0557 (Bit Score: 58; Significance: 3e-24; HSPs: 2)
Name: scaffold0557
Description:

Target: scaffold0557; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 295 - 392
Target Start/End: Complemental strand, 5424 - 5327
Alignment:
Q  295 ttgcattggaacattagctacttcagcattagacactttgtagtgatagtagctagctgcaaccccttgttggccataaaaactttggtccatctgag 392  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||||  |||| | |||||||||||| | ||| |||| ||||| ||||    
T  5424 ttgcattggaacattagctacttcagcattaggcactttgtagtgatagtagctatttgcatcaccttgttggccaaataaattttgatccatttgag 5327  T

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Target: scaffold0557; HSP #2
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 295 - 387
Target Start/End: Original strand, 5628 - 5720
Alignment:
Q  295 ttgcattggaacattagctacttcagcattagacactttgtagtgatagtagctagctgcaaccccttgttggccataaaaactttggtccat 387  Q
    |||||||||||| |||||||||||| |||||| ||||||||||||||||||||||  | || | |||||||||||| | ||| ||||||||||    
T  5628 ttgcattggaaccttagctacttcaccattaggcactttgtagtgatagtagctatttccatcaccttgttggccaaagaaattttggtccat 5720  T

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Target: scaffold0442 (Bit Score: 57; Significance: 1e-23; HSPs: 2)
Name: scaffold0442
Description:

Target: scaffold0442; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 295 - 387
Target Start/End: Original strand, 9043 - 9135
Alignment:
Q  295 ttgcattggaacattagctacttcagcattagacactttgtagtgatagtagctagctgcaaccccttgttggccataaaaactttggtccat 387  Q
    ||||||||||||||||||||||||| |||||| ||||||||||||||||||||||  |||| | |||||||||||| | ||| ||||||||||    
T  9043 ttgcattggaacattagctacttcaacattaggcactttgtagtgatagtagctatttgcatcaccttgttggccaaagaaattttggtccat 9135  T

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Target: scaffold0442; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 295 - 349
Target Start/End: Complemental strand, 8789 - 8735
Alignment:
Q  295 ttgcattggaacattagctacttcagcattagacactttgtagtgatagtagcta 349  Q
    ||||||||||||||||||||||||| |||||| ||||||||||||||||||||||    
T  8789 ttgcattggaacattagctacttcaacattaggcactttgtagtgatagtagcta 8735  T

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Target: scaffold0115 (Bit Score: 46; Significance: 4e-17; HSPs: 1)
Name: scaffold0115
Description:

Target: scaffold0115; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 295 - 392
Target Start/End: Complemental strand, 47277 - 47180
Alignment:
Q  295 ttgcattggaacattagctacttcagcattagacactttgtagtgatagtagctagctgcaaccccttgttggccataaaaactttggtccatctgag 392  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||  ||||||  |  | | |||||||||||||  ||| |||||||||| ||||    
T  47277 ttgcattggaacattagctacttcagcattaggcactttgtagtgattatagctatttttatcaccttgttggccattgaaattttggtccatttgag 47180  T

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