View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20577_low_6 (Length: 401)

Name: NF20577_low_6
Description: NF20577
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20577_low_6
NF20577_low_6
[»] chr3 (4 HSPs)
chr3 (1-257)||(29532860-29533121)
chr3 (22-257)||(11560271-11560509)
chr3 (22-257)||(46044539-46044777)
chr3 (329-385)||(29533616-29533672)
[»] chr8 (3 HSPs)
chr8 (21-257)||(38082674-38082914)
chr8 (22-257)||(8205891-8206129)
chr8 (22-257)||(22972829-22973073)
[»] scaffold0041 (1 HSPs)
scaffold0041 (21-257)||(65067-65306)
[»] chr7 (2 HSPs)
chr7 (21-257)||(40907788-40908027)
chr7 (111-257)||(32257825-32257971)
[»] scaffold0645 (1 HSPs)
scaffold0645 (22-257)||(2186-2424)
[»] chr2 (1 HSPs)
chr2 (22-257)||(13432403-13432641)
[»] chr5 (1 HSPs)
chr5 (21-254)||(19880183-19880425)
[»] chr4 (1 HSPs)
chr4 (21-255)||(42808938-42809178)
[»] chr1 (2 HSPs)
chr1 (22-185)||(17751797-17751963)
chr1 (22-185)||(1533587-1533752)


Alignment Details
Target: chr3 (Bit Score: 166; Significance: 1e-88; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 166; E-Value: 1e-88
Query Start/End: Original strand, 1 - 257
Target Start/End: Complemental strand, 29533121 - 29532860
Alignment:
Q  1 tcatcaaattaattagttttaggttttttctaaattgctttgggaaagaggtgggtaaac---ccatcttgacgtggcatcactataacatggacaacag 97  Q
    |||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||   | ||||||||||| |||||||||||||||||||||||    
T  29533121 tcatcaaattaattagttttaggttttttctaaattaccttgggaaagaggtgggtaaactgcctatcttgacgtgacatcactataacatggacaacag 29533022  T
Q  98 taatccacaatataaaatggatgaggagatgggtttgatatattgacccggtatacttttgttgttagcagattgactcattaattaattttcnnnnnnn 197  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||            
T  29533021 taatccacaatataaaatggacgaggagatgggtttgatatattgacccggtatacttttgttattagcagattgacccattaattaatttttaaaaaga 29532922  T
Q  198 nngttccagattattttcttct--tcttcgtaactgttttcttctccaatatcaaataactg 257  Q
       |||||||||||||||||||  ||| | ||||||||||||||||||||||||||||||||    
T  29532921 aatttccagattattttcttcttctctgcataactgttttcttctccaatatcaaataactg 29532860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 146; E-Value: 8e-77
Query Start/End: Original strand, 22 - 257
Target Start/End: Complemental strand, 11560509 - 11560271
Alignment:
Q  22 ggttttttctaaattgctttgggaaagaggtgggtaaac---ccatcttgacgtggcatcactataacatggacaacagtaatccacaatataaaatgga 118  Q
    ||||||||||||||| | |||||||||||||||||||||   ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  11560509 ggttttttctaaattaccttgggaaagaggtgggtaaactgcccatcttgacgtggcatcactataacatggacaacagtaatccacaataaaaaatgga 11560410  T
Q  119 tgaggagatgggtttgatatattgacccggtatacttttgttgttagcagattgactcattaattaattttcnnnnnnnnngttccagattattttcttc 218  Q
     |||||||||||||||||||||||||| |||||||||||||| ||||||||||||| |||||||||||||||          ||| |||| |||||||||    
T  11560409 cgaggagatgggtttgatatattgaccaggtatacttttgttattagcagattgacccattaattaattttcaaaaaaaaaattctagataattttcttc 11560310  T
Q  219 ttcttcgtaactgttttcttctccaatatcaaataactg 257  Q
    |||| | |||||| |||||||||||||||||||||||||    
T  11560309 ttctgcataactgctttcttctccaatatcaaataactg 11560271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 22 - 257
Target Start/End: Complemental strand, 46044777 - 46044539
Alignment:
Q  22 ggttttttctaaattgctttgggaaagaggtgggtaaac---ccatcttgacgtggcatcactataacatggacaacagtaatccacaatataaaatgga 118  Q
    |||||||||||| |||| |||||||||||||||||||||   |||||||||||||||| |||||||| |||||||||| |||||||||||| ||||||||    
T  46044777 ggttttttctaacttgccttgggaaagaggtgggtaaactgcccatcttgacgtggcagcactataatatggacaacaataatccacaataaaaaatgga 46044678  T
Q  119 tgaggagatgggtttgatatattgacccggtatacttttgttgttagcagattgactcattaattaattttcnnnnnnnnngttccagattattttcttc 218  Q
     ||||||||| ||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||           ||||||||||||||||     
T  46044677 cgaggagatgagtttgatatattgacccggtatacttttgttattagcagattgacccattaattaattttcaaaaaaaaaaatccagattattttctta 46044578  T
Q  219 ttcttcgtaactgttttcttctccaatatcaaataactg 257  Q
    |||| | |||||| |||||||||||||||||||||||||    
T  46044577 ttctgcataactgctttcttctccaatatcaaataactg 46044539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 329 - 385
Target Start/End: Original strand, 29533616 - 29533672
Alignment:
Q  329 gtgcttcaatccttattggtctcttactctcttatacggtggtggtattgtgccatc 385  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29533616 gtgcttcaatccttattggtctcttactctcttatacggtggtggtattgtgccatc 29533672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 148; Significance: 5e-78; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 148; E-Value: 5e-78
Query Start/End: Original strand, 21 - 257
Target Start/End: Original strand, 38082674 - 38082914
Alignment:
Q  21 aggttttttctaaattgctttgggaaagaggtgggtaaac---ccatcttgacgtggcatcactataacatggacaacagtaatccacaatataaaatgg 117  Q
    |||||||||||||||||| |||||||||||||||||||||   ||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||    
T  38082674 aggttttttctaaattgccttgggaaagaggtgggtaaactgcccatcttgacgtggcatcactataacatggataacagtaatccacaataaaaaatgg 38082773  T
Q  118 atgaggagatgggtttgatatattgacccggtatac-ttttgttgttagcagattgactcattaattaattttcnnnnnnnnngttccagattattttct 216  Q
    | |||||||||||||||||||||||||||||||||| ||||||| ||||||||||||| ||||||||||||||           ||||||||||||||||    
T  38082774 acgaggagatgggtttgatatattgacccggtatactttttgttattagcagattgacccattaattaatttttaaaaaaaaatttccagattattttct 38082873  T
Q  217 tcttcttcgtaactgttttcttctccaatatcaaataactg 257  Q
    |||||| | |||||| |||||||||||||||||||||||||    
T  38082874 tcttctgcataactgctttcttctccaatatcaaataactg 38082914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 146; E-Value: 8e-77
Query Start/End: Original strand, 22 - 257
Target Start/End: Complemental strand, 8206129 - 8205891
Alignment:
Q  22 ggttttttctaaattgctttgggaaagaggtgggtaaac---ccatcttgacgtggcatcactataacatggacaacagtaatccacaatataaaatgga 118  Q
    ||||||||||||||||| |||||||||||||||||||||   |||||||||||||||||| |||||||||||||||||||||||||||||| ||||| ||    
T  8206129 ggttttttctaaattgccttgggaaagaggtgggtaaactgcccatcttgacgtggcatcgctataacatggacaacagtaatccacaataaaaaattga 8206030  T
Q  119 tgaggagatgggtttgatatattgacccggtatacttttgttgttagcagattgactcattaattaattttcnnnnnnnnngttccagattattttcttc 218  Q
     ||||||||||||||||||||||||||||||||||||||||| | ||||||||||| |||||||| |||||           ||||||||||||||||||    
T  8206029 cgaggagatgggtttgatatattgacccggtatacttttgttatcagcagattgacccattaattgattttaaaaaaaaaaattccagattattttcttc 8205930  T
Q  219 ttcttcgtaactgttttcttctccaatatcaaataactg 257  Q
    |||| | ||||||||||||||||||||||||||||||||    
T  8205929 ttctgcataactgttttcttctccaatatcaaataactg 8205891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 22 - 257
Target Start/End: Original strand, 22972829 - 22973073
Alignment:
Q  22 ggttttttctaaattgctttgggaaagaggtgggtaaac---ccatcttgacgtggcatcactataacatggacaacagtaatccacaatataaaatgga 118  Q
    ||||||||||||||||| |||||||||||||||||||||   ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  22972829 ggttttttctaaattgccttgggaaagaggtgggtaaactgcccatcttgacgtggcatcactataacatggacaacagtaatccacaataaaaaatgga 22972928  T
Q  119 tgaggagatgggtttgatatattgacccggtatacttttgttgttagcagattgactcattaattaattttc------nnnnnnnnngttccagattatt 212  Q
     |||||||||||||||||||||||| |||||||||||||||| |||||| |||||  |||||||||||||||                ||||||||||||    
T  22972929 cgaggagatgggtttgatatattgatccggtatacttttgttattagcatattgatccattaattaattttcaaaaaaaaaaaaaaaattccagattatt 22973028  T
Q  213 ttcttcttcttcgtaactgttttcttctccaatatcaaataactg 257  Q
    |||||||||| | ||||||||||||||||||||||||||||||||    
T  22973029 ttcttcttctgcataactgttttcttctccaatatcaaataactg 22973073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0041 (Bit Score: 147; Significance: 2e-77; HSPs: 1)
Name: scaffold0041
Description:

Target: scaffold0041; HSP #1
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 21 - 257
Target Start/End: Original strand, 65067 - 65306
Alignment:
Q  21 aggttttttctaaattgctttgggaaagaggtgggtaaac---ccatcttgacgtggcatcactataacatggacaacagtaatccacaatataaaatgg 117  Q
    |||||||||||||||||| |||||||||||||||||||||   ||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||    
T  65067 aggttttttctaaattgccttgggaaagaggtgggtaaactgcccatcttgacgtggcatcactataacatggacagcagtaatccacaataaaaaatgg 65166  T
Q  118 atgaggagatgggtttgatatattgacccggtatacttttgttgttagcagattgactcattaattaattttcnnnnnnnnngttccagattattttctt 217  Q
    | ||||||||||||||||||||||||||||||||||||||||| |||||||||| |  |||||||||||||||          || ||||||||||||||    
T  65167 acgaggagatgggtttgatatattgacccggtatacttttgttattagcagattaatccattaattaattttcaaaaaaaaattttcagattattttctt 65266  T
Q  218 cttcttcgtaactgttttcttctccaatatcaaataactg 257  Q
    ||||| | |||||| |||||||||||||||||||||||||    
T  65267 cttctgcataactgctttcttctccaatatcaaataactg 65306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 147; Significance: 2e-77; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 21 - 257
Target Start/End: Complemental strand, 40908027 - 40907788
Alignment:
Q  21 aggttttttctaaattgctttgggaaagaggtgggtaaac---ccatcttgacgtggcatcactataacatggacaacagtaatccacaatataaaatgg 117  Q
    |||||||||||||||||| |||||||||||||||||||||   ||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||    
T  40908027 aggttttttctaaattgccttgggaaagaggtgggtaaactgcccatcttgacgtggcatcactataacatggacagcagtaatccacaataaaaaatgg 40907928  T
Q  118 atgaggagatgggtttgatatattgacccggtatacttttgttgttagcagattgactcattaattaattttcnnnnnnnnngttccagattattttctt 217  Q
    | ||||||||||||||||||||||||||||||||||||||||| |||||||||| |  |||||||||||||||          || ||||||||||||||    
T  40907927 acgaggagatgggtttgatatattgacccggtatacttttgttattagcagattaatccattaattaattttcaaaaaaaaattttcagattattttctt 40907828  T
Q  218 cttcttcgtaactgttttcttctccaatatcaaataactg 257  Q
    ||||| | |||||| |||||||||||||||||||||||||    
T  40907827 cttctgcataactgctttcttctccaatatcaaataactg 40907788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 111 - 257
Target Start/End: Complemental strand, 32257971 - 32257825
Alignment:
Q  111 aaaatggatgaggagatgggtttgatatattgacccggtatacttttgttgttagcagattgactcattaattaattttcnnnnnnnnngttccagatta 210  Q
    |||||||| ||||||||||||||||||||||||||||||| ||||||||| ||||||||||||| |||||||||||||            ||||||||||    
T  32257971 aaaatggacgaggagatgggtttgatatattgacccggtaaacttttgttattagcagattgacccattaattaatttaaaaaaaaaaaattccagatta 32257872  T
Q  211 ttttcttcttcttcgtaactgttttcttctccaatatcaaataactg 257  Q
    |||||||||||| | |||||| |||||||||||||||||||||||||    
T  32257871 ttttcttcttctacataactgctttcttctccaatatcaaataactg 32257825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0645 (Bit Score: 146; Significance: 8e-77; HSPs: 1)
Name: scaffold0645
Description:

Target: scaffold0645; HSP #1
Raw Score: 146; E-Value: 8e-77
Query Start/End: Original strand, 22 - 257
Target Start/End: Original strand, 2186 - 2424
Alignment:
Q  22 ggttttttctaaattgctttgggaaagaggtgggtaaac---ccatcttgacgtggcatcactataacatggacaacagtaatccacaatataaaatgga 118  Q
    ||||||||||||||| | |||||||||||||||||||||   ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  2186 ggttttttctaaattaccttgggaaagaggtgggtaaactgcccatcttgacgtggcatcactataacatggacaacagtaatccacaataaaaaatgga 2285  T
Q  119 tgaggagatgggtttgatatattgacccggtatacttttgttgttagcagattgactcattaattaattttcnnnnnnnnngttccagattattttcttc 218  Q
     |||||||||||||||||||||||||| |||||||||||||| ||||||||||||| |||||||||||||||          ||| |||| |||||||||    
T  2286 cgaggagatgggtttgatatattgaccaggtatacttttgttattagcagattgacccattaattaattttcaaaaaaaaaattctagataattttcttc 2385  T
Q  219 ttcttcgtaactgttttcttctccaatatcaaataactg 257  Q
    |||| | |||||| |||||||||||||||||||||||||    
T  2386 ttctgcataactgctttcttctccaatatcaaataactg 2424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 130; Significance: 3e-67; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 22 - 257
Target Start/End: Original strand, 13432403 - 13432641
Alignment:
Q  22 ggttttttctaaattgctttgggaaagaggtgggtaaacc---catcttgacgtggcatcactataacatggacaacagtaatccacaatataaaatgga 118  Q
    ||||||||||||||||  |||||||||||||||||||||    |||||| ||||||||||||||||||||||||||||||||| ||||||| ||||||||    
T  13432403 ggttttttctaaattgtcttgggaaagaggtgggtaaactgctcatcttaacgtggcatcactataacatggacaacagtaattcacaataaaaaatgga 13432502  T
Q  119 tgaggagatgggtttgatatattgacccggtatacttttgttgttagcagattgactcattaattaattttcnnnnnnnnngttccagattattttcttc 218  Q
     ||||||||| ||||||||||||||||| ||||||||||||| ||||||||||||| ||||||||||||||           ||||| ||||||||||||    
T  13432503 cgaggagatgagtttgatatattgacccagtatacttttgttattagcagattgacccattaattaatttttaaaaaaaaaattccaaattattttcttc 13432602  T
Q  219 ttcttcgtaactgttttcttctccaatatcaaataactg 257  Q
    |||| | ||||||||||||||| ||||||||||||||||    
T  13432603 ttctgcataactgttttcttcttcaatatcaaataactg 13432641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 115; Significance: 3e-58; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 21 - 254
Target Start/End: Complemental strand, 19880425 - 19880183
Alignment:
Q  21 aggttttttctaaattgctttgggaaagaggtgggtaaaccc---atcttgacgtggcatcactataacatggacaacagtaatccacaatataaaatgg 117  Q
    ||||||||||||| |||| ||||||| ||||||||||||||    ||||||||||||||||||||||||||||||||||| |||| |||||| |||||||    
T  19880425 aggttttttctaacttgccttgggaatgaggtgggtaaaccgccaatcttgacgtggcatcactataacatggacaacagcaatctacaataaaaaatgg 19880326  T
Q  118 atgaggagatgggtttgatatattgacccggtatacttttgttgttagcagattgactcattaattaattttcnnnnnnnnngttccagattattttctt 217  Q
    | ||||||||||||||||||||||||||| ||||||||||||| ||||||||||||| |||||||||| ||||          |||||||||||||||||    
T  19880325 acgaggagatgggtttgatatattgacccagtatacttttgttattagcagattgacccattaattaaatttcaaaaaaaaaattccagattattttctt 19880226  T
Q  218 cttcttc------gtaactgttttcttctccaatatcaaataa 254  Q
    ||||| |       |||||| ||||||||||||||||||||||    
T  19880225 cttctgcataactataactgctttcttctccaatatcaaataa 19880183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 114; Significance: 1e-57; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 21 - 255
Target Start/End: Original strand, 42808938 - 42809178
Alignment:
Q  21 aggttttttctaaattgctttgggaaagaggtgggtaaa---cccatcttgacgtggcatcactataacatggacaacagtaatccacaatataaaatgg 117  Q
    ||||||||||||| |||||||||||||||||||||||||   |||||||||| ||||||||||||||||||||||||| ||||||||||||| |||||||    
T  42808938 aggttttttctaacttgctttgggaaagaggtgggtaaattacccatcttgaggtggcatcactataacatggacaactgtaatccacaataaaaaatgg 42809037  T
Q  118 atgaggagatgggtttgatatattgacccggtatacttttgttgttagcagattgactcattaattaattttcnnnnnnnnng---ttccagattatttt 214  Q
    |  ||||||||| ||||||||||||||| |||||||||||||| ||||||||||||| |||||||||| |                ||||||||||||||    
T  42809038 actaggagatggatttgatatattgacctggtatacttttgttattagcagattgacccattaattaactaaaaaaaaataaaaaattccagattatttt 42809137  T
Q  215 cttcttcttcgtaactgttttcttctccaatatcaaataac 255  Q
    |||||||| | |||||| |||||||||||||||||||||||    
T  42809138 cttcttctgcataactgctttcttctccaatatcaaataac 42809178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 113; Significance: 4e-57; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 22 - 185
Target Start/End: Original strand, 17751797 - 17751963
Alignment:
Q  22 ggttttttctaaattgctttgggaaagaggtgggtaaac---ccatcttgacgtggcatcactataacatggacaacagtaatccacaatataaaatgga 118  Q
    |||||||||||| |||| |||||||||||||||||||||   ||||||||||||||||||||||||||||||||||| |||||| |||  | ||||||||    
T  17751797 ggttttttctaacttgccttgggaaagaggtgggtaaactacccatcttgacgtggcatcactataacatggacaactgtaatctacaccaaaaaatgga 17751896  T
Q  119 tgaggagatgggtttgatatattgacccggtatacttttgttgttagcagattgactcattaattaa 185  Q
    | |||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||    
T  17751897 ttaggagatgggtttgatatattgacccggtatacttttgttattagcagattgacccattaattaa 17751963  T

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Target: chr1; HSP #2
Raw Score: 101; E-Value: 6e-50
Query Start/End: Original strand, 22 - 185
Target Start/End: Original strand, 1533587 - 1533752
Alignment:
Q  22 ggttttttctaaattgctttgggaaagaggtgggtaaac---ccatcttgacgtggcatcactataacatggacaacagtaatccacaatataaaatgga 118  Q
    |||||||||||| |||| |||||||||||||||||||||   |||||||||||||||||||| |||||||||||||| |||||| |||  | ||||||||    
T  1533587 ggttttttctaacttgccttgggaaagaggtgggtaaactacccatcttgacgtggcatcac-ataacatggacaactgtaatctacaccaaaaaatgga 1533685  T
Q  119 tgaggagatgggtttgatatattgacccggtatacttttgttgttagcagattgactcattaattaa 185  Q
    | ||||||||| |||||||||||||||||||||||||||||| ||||||||||||| ||||||||||    
T  1533686 ttaggagatggatttgatatattgacccggtatacttttgttattagcagattgacccattaattaa 1533752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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