View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20577_low_8 (Length: 391)
Name: NF20577_low_8
Description: NF20577
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20577_low_8 |
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Alignment Details
Target: chr8 (Bit Score: 267; Significance: 1e-149; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 37 - 374
Target Start/End: Complemental strand, 40573058 - 40572720
Alignment:
| Q |
37 |
tttacctagaggagccacattaaattctttaattatccttatccccaaacctccaaactccttattcaagcaaacaatatcctgtttgttccaagttatt |
136 |
Q |
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| T |
40573058 |
tttacctagaagagccacattaaattctttaattatccttatcccaaaacctccaaactacttattcaagcaaacaatgtcccgtttgatccaagttatt |
40572959 |
T |
|
| Q |
137 |
ttttcaaaatcctcagtttttcgccacattgagaaattaaaaatatattagaccgaagaaataatagaagaaggaaataaaatagactatgagagagaac |
236 |
Q |
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|||| |||||||||| ||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
40572958 |
ttttaaaaatcctcactttttcgccacattgagaagttaaaaatatattagactgaagaaataatagaagaaggaaataaaatagactatgagagaggac |
40572859 |
T |
|
| Q |
237 |
atgacatacttttgaagcatcaaatgaccatccatcgaaagatttgtgctcttccaaatcgaccgtttaaccttataatagtcaaccaaaaggataccaa |
336 |
Q |
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| T |
40572858 |
atgacatatttttgaagcatcaaacgaccatccatcgaaagatttctgctcttccaaatggacagtttaaccttataatagtcaaccaaaaggataccaa |
40572759 |
T |
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| Q |
337 |
aaatttaattt-cgtgaatttgtcgaccacccatgaacc |
374 |
Q |
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| T |
40572758 |
aaatttaatttgcgtgaatttgtcgaccacccatgaacc |
40572720 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 55 - 113
Target Start/End: Original strand, 2540620 - 2540678
Alignment:
| Q |
55 |
attaaattctttaattatccttatccccaaacctccaaactccttattcaagcaaacaa |
113 |
Q |
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| T |
2540620 |
attaaattctctaattctccttatccccaaaccaccaacctccttacttaaacaaacaa |
2540678 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 91 - 151
Target Start/End: Original strand, 3654287 - 3654347
Alignment:
| Q |
91 |
aaactccttattcaagcaaacaatatcctgtttgttccaagttattttttcaaaatcctca |
151 |
Q |
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|||||||||||||||||||| | | ||| |||| ||||||||||||||| ||||||||| |
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| T |
3654287 |
aaactccttattcaagcaaatagtgtcccatttgatccaagttatttttttgaaatcctca |
3654347 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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