View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20577_low_9 (Length: 382)
Name: NF20577_low_9
Description: NF20577
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20577_low_9 |
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Alignment Details
Target: chr2 (Bit Score: 174; Significance: 2e-93; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 174; E-Value: 2e-93
Query Start/End: Original strand, 16 - 366
Target Start/End: Original strand, 38287413 - 38287739
Alignment:
| Q |
16 |
gatgaattatggtctatgcaattagtctaggtggatagttcaattattgtctatatctaattggatgtccaannnnnnnagggatggtaatcatgttaaa |
115 |
Q |
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| T |
38287413 |
gatgaattatggtctatgcaattagtctaggtggatagttcaattattgtctatatctaattggatgtccaatttttttagtgatggtaatcatgttaaa |
38287512 |
T |
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| Q |
116 |
ttaagtatttatattgattttgtcaatggttattttttgccgaaaaacttaaccgattagctggtcatcttgagtgaatttcgccatctcaaccacattt |
215 |
Q |
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| T |
38287513 |
ttaagtatttatattgatt----------ttatttttttccgaaaaacttaaccaattagctagtcatcttgagtgaatttcaccctgtcaaccacattt |
38287602 |
T |
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| Q |
216 |
tttctatccacaatgttcaaatgcaagagtttgattaaagaatttgcacataatgttggtaatatcctatttatttnnnnnnnnnnnttaacaaatagca |
315 |
Q |
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| T |
38287603 |
tttctatccacaacgttcaaatgcaagag-------------tttgcacataatgttggtaatatcctattta-ttaaaaaaaaaaattaacaaataaca |
38287688 |
T |
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| Q |
316 |
atgatctttgtcacaaaaaagatctaacattttaatgcatgagccaattat |
366 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38287689 |
atgatctttgtcacaaaaaagatctaacattttaatgcatgagccaattat |
38287739 |
T |
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