View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20578_high_19 (Length: 454)

Name: NF20578_high_19
Description: NF20578
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20578_high_19
NF20578_high_19
[»] chr3 (25 HSPs)
chr3 (33-121)||(39583336-39583424)
chr3 (33-108)||(38145981-38146056)
chr3 (16-122)||(13582421-13582528)
chr3 (12-122)||(26856847-26856958)
chr3 (11-109)||(53785633-53785732)
chr3 (33-121)||(26772670-26772758)
chr3 (33-121)||(32546707-32546795)
chr3 (33-121)||(44198679-44198767)
chr3 (33-124)||(52411998-52412089)
chr3 (33-107)||(42205993-42206067)
chr3 (57-130)||(4669794-4669867)
chr3 (11-121)||(37133083-37133194)
chr3 (12-109)||(3443397-3443495)
chr3 (18-101)||(4763884-4763967)
chr3 (33-120)||(46940880-46940967)
chr3 (11-120)||(7502096-7502204)
chr3 (35-124)||(25094681-25094770)
chr3 (48-109)||(38671002-38671063)
chr3 (33-88)||(44781-44836)
chr3 (70-124)||(7257700-7257754)
chr3 (32-106)||(25190040-25190114)
chr3 (14-119)||(25324943-25325049)
chr3 (75-120)||(465030-465075)
chr3 (71-120)||(26276528-26276577)
chr3 (35-124)||(38978908-38978997)
[»] chr8 (20 HSPs)
chr8 (33-130)||(38815197-38815294)
chr8 (11-119)||(3821138-3821247)
chr8 (33-121)||(39434579-39434667)
chr8 (38-121)||(3187882-3187965)
chr8 (25-121)||(22589434-22589531)
chr8 (35-107)||(25021923-25021995)
chr8 (40-121)||(42659139-42659220)
chr8 (73-121)||(24320249-24320297)
chr8 (77-124)||(500151-500198)
chr8 (33-96)||(6592513-6592575)
chr8 (35-94)||(24124967-24125026)
chr8 (48-102)||(24451051-24451105)
chr8 (56-109)||(8882268-8882321)
chr8 (12-108)||(9259377-9259474)
chr8 (35-107)||(8540489-8540561)
chr8 (33-95)||(43823927-43823989)
chr8 (35-124)||(4699780-4699868)
chr8 (81-122)||(8619733-8619774)
chr8 (37-121)||(18804525-18804608)
chr8 (33-109)||(37514145-37514221)
[»] chr6 (10 HSPs)
chr6 (32-121)||(32115630-32115719)
chr6 (41-124)||(3137362-3137445)
chr6 (35-108)||(959506-959579)
chr6 (33-121)||(17249412-17249500)
chr6 (36-118)||(29338189-29338271)
chr6 (35-120)||(28625844-28625928)
chr6 (50-109)||(357840-357899)
chr6 (33-119)||(24016251-24016337)
chr6 (33-121)||(34304408-34304496)
chr6 (39-109)||(33220824-33220894)
[»] chr7 (28 HSPs)
chr7 (22-121)||(21326933-21327033)
chr7 (33-120)||(48539094-48539181)
chr7 (33-119)||(41117877-41117963)
chr7 (11-119)||(43856788-43856897)
chr7 (11-101)||(4501191-4501282)
chr7 (11-109)||(27521395-27521494)
chr7 (11-91)||(19277235-19277316)
chr7 (36-109)||(23037469-23037542)
chr7 (35-120)||(30216167-30216252)
chr7 (11-129)||(22197891-22198009)
chr7 (11-129)||(22239812-22239930)
chr7 (33-108)||(24527514-24527589)
chr7 (11-120)||(5972300-5972410)
chr7 (33-107)||(25187038-25187112)
chr7 (33-119)||(28517394-28517480)
chr7 (39-121)||(45003010-45003092)
chr7 (11-119)||(40726564-40726673)
chr7 (44-112)||(36558985-36559053)
chr7 (33-109)||(45613949-45614025)
chr7 (11-109)||(5825197-5825296)
chr7 (57-120)||(27027761-27027824)
chr7 (67-121)||(2904292-2904346)
chr7 (37-130)||(43333941-43334034)
chr7 (33-121)||(982861-982949)
chr7 (33-104)||(10905047-10905118)
chr7 (45-119)||(34772696-34772770)
chr7 (66-120)||(42295324-42295378)
chr7 (66-94)||(45974739-45974767)
[»] chr4 (29 HSPs)
chr4 (11-119)||(4419177-4419286)
chr4 (33-121)||(3329908-3329996)
chr4 (34-120)||(23242813-23242899)
chr4 (33-106)||(16955387-16955460)
chr4 (35-169)||(8738069-8738203)
chr4 (12-121)||(25504207-25504317)
chr4 (39-120)||(50001039-50001120)
chr4 (33-121)||(53170424-53170513)
chr4 (38-102)||(18981651-18981714)
chr4 (41-124)||(23233229-23233312)
chr4 (17-119)||(55933550-55933653)
chr4 (48-109)||(48657037-48657098)
chr4 (33-109)||(23255637-23255713)
chr4 (33-121)||(30940839-30940927)
chr4 (11-119)||(600776-600885)
chr4 (40-121)||(53619498-53619579)
chr4 (33-101)||(38535676-38535744)
chr4 (33-121)||(39001309-39001397)
chr4 (35-108)||(49344248-49344325)
chr4 (57-121)||(50442610-50442674)
chr4 (72-107)||(1041351-1041386)
chr4 (35-130)||(26521392-26521486)
chr4 (33-108)||(34107803-34107878)
chr4 (33-120)||(50464403-50464490)
chr4 (11-109)||(56462190-56462289)
chr4 (142-176)||(214961-214995)
chr4 (23-91)||(6865916-6865984)
chr4 (35-120)||(45661604-45661689)
chr4 (11-94)||(132324-132408)
[»] chr1 (17 HSPs)
chr1 (9-121)||(22346807-22346920)
chr1 (11-119)||(34644480-34644589)
chr1 (11-130)||(2898605-2898725)
chr1 (33-109)||(24177618-24177694)
chr1 (33-130)||(31737430-31737526)
chr1 (40-109)||(40515989-40516057)
chr1 (11-130)||(2764382-2764502)
chr1 (33-121)||(21472915-21473003)
chr1 (33-119)||(6670212-6670298)
chr1 (66-121)||(4611101-4611156)
chr1 (17-107)||(4862079-4862170)
chr1 (11-93)||(20259881-20259964)
chr1 (67-122)||(30688468-30688523)
chr1 (33-96)||(38731546-38731609)
chr1 (78-120)||(45835338-45835380)
chr1 (48-121)||(47459594-47459667)
chr1 (33-121)||(28041234-28041322)
[»] chr5 (15 HSPs)
chr5 (29-135)||(15292128-15292234)
chr5 (33-121)||(2566202-2566290)
chr5 (35-119)||(32269906-32269990)
chr5 (39-121)||(430514-430596)
chr5 (11-120)||(13166994-13167104)
chr5 (37-122)||(23023506-23023591)
chr5 (11-122)||(37873722-37873834)
chr5 (33-96)||(22188762-22188825)
chr5 (32-109)||(16017097-16017174)
chr5 (33-101)||(19260236-19260304)
chr5 (33-109)||(35310372-35310448)
chr5 (78-112)||(43349981-43350015)
chr5 (44-109)||(15809973-15810038)
chr5 (33-102)||(25663139-25663208)
chr5 (33-102)||(38875570-38875638)
[»] chr2 (14 HSPs)
chr2 (33-121)||(17344550-17344638)
chr2 (11-121)||(4413150-4413261)
chr2 (9-122)||(13413262-13413376)
chr2 (71-112)||(26407839-26407880)
chr2 (33-121)||(9685522-9685610)
chr2 (33-109)||(41868015-41868091)
chr2 (39-121)||(27502274-27502356)
chr2 (11-130)||(7760929-7761049)
chr2 (11-109)||(16351928-16352027)
chr2 (11-101)||(44686348-44686439)
chr2 (23-108)||(19161879-19161965)
chr2 (33-121)||(18745061-18745149)
chr2 (34-130)||(3825629-3825725)
chr2 (11-119)||(8036566-8036677)
[»] scaffold0148 (1 HSPs)
scaffold0148 (11-129)||(33154-33273)
[»] scaffold0009 (1 HSPs)
scaffold0009 (38-121)||(103018-103101)
[»] scaffold0490 (1 HSPs)
scaffold0490 (33-88)||(6279-6334)
[»] scaffold0361 (1 HSPs)
scaffold0361 (37-117)||(17390-17468)
[»] scaffold1768 (1 HSPs)
scaffold1768 (35-124)||(293-382)


Alignment Details
Target: chr3 (Bit Score: 61; Significance: 5e-26; HSPs: 25)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 33 - 121
Target Start/End: Original strand, 39583336 - 39583424
Alignment:
Q  33 agagttcaaagggtcatgcatagaaatgtaatttctcctaggttcatgaatgttgtgtttacgatgattgattttgctattcaaaaagg 121  Q
    ||||||||||||||||||||||| ||||| || |||||||||||||||||||| |||||||||| |||||||||||| || ||||||||    
T  39583336 agagttcaaagggtcatgcatagcaatgtcatgtctcctaggttcatgaatgtcgtgtttacgaggattgattttgccatccaaaaagg 39583424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 33 - 108
Target Start/End: Complemental strand, 38146056 - 38145981
Alignment:
Q  33 agagttcaaagggtcatgcatagaaatgtaatttctcctaggttcatgaatgttgtgtttacgatgattgattttg 108  Q
    ||||||||||||||||||||||  ||||| || |||||||||| |||||| |||||||||||||||||||||||||    
T  38146056 agagttcaaagggtcatgcataacaatgtcatgtctcctaggtccatgaacgttgtgtttacgatgattgattttg 38145981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 16 - 122
Target Start/End: Complemental strand, 13582528 - 13582421
Alignment:
Q  16 attgtggaccttttaca-agagttcaaagggtcatgcatagaaatgtaatttctcctaggttcatgaatgttgtgtttacgatgattgattttgctattc 114  Q
    ||||| |||||| |||| |||||||||| |||||||||||  ||||| || |||||||||  |||||||||||||||||||| ||||||||| || || |    
T  13582528 attgttgaccttctacagagagttcaaaaggtcatgcataacaatgtcatgtctcctaggaccatgaatgttgtgtttacgaagattgatttagccatcc 13582429  T
Q  115 aaaaaggc 122  Q
    ||||||||    
T  13582428 aaaaaggc 13582421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 12 - 122
Target Start/End: Original strand, 26856847 - 26856958
Alignment:
Q  12 agagattgtggaccttttaca-agagttcaaagggtcatgcatagaaatgtaatttctcctaggttcatgaatgttgtgtttacgatgattgattttgct 110  Q
    ||||| ||| |||||| |||| ||||||||||||||||||||||| ||||| || ||||||||||| |||||||||||| || ||| ||||| |||| |     
T  26856847 agagactgttgaccttctacatagagttcaaagggtcatgcatagcaatgtcatgtctcctaggtttatgaatgttgtgcttgcgaggattggttttacc 26856946  T
Q  111 attcaaaaaggc 122  Q
    || |||||||||    
T  26856947 atccaaaaaggc 26856958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 11 - 109
Target Start/End: Complemental strand, 53785732 - 53785633
Alignment:
Q  11 cagagattgtggaccttttaca-agagttcaaagggtcatgcatagaaatgtaatttctcctaggttcatgaatgttgtgtttacgatgattgattttgc 109  Q
    ||||| |||| |||||| |||| |||||||||| |||||||||||| ||||| || |||||||||| |||||||||| ||||||||| ||||| ||||||    
T  53785732 cagaggttgttgaccttctacatagagttcaaaaggtcatgcatagcaatgtcatgtctcctaggtccatgaatgttatgtttacgaggattggttttgc 53785633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 33 - 121
Target Start/End: Complemental strand, 26772758 - 26772670
Alignment:
Q  33 agagttcaaagggtcatgcatagaaatgtaatttctcctaggttcatgaatgttgtgtttacgatgattgattttgctattcaaaaagg 121  Q
    ||||| |||||| | |||||||  ||||| || |||||||||| |||||||||||||||||||| |||||||||||| || ||||||||    
T  26772758 agagtacaaaggattatgcataacaatgttatgtctcctaggtccatgaatgttgtgtttacgaggattgattttgccatccaaaaagg 26772670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 33 - 121
Target Start/End: Complemental strand, 32546795 - 32546707
Alignment:
Q  33 agagttcaaagggtcatgcatagaaatgtaatttctcctaggttcatgaatgttgtgtttacgatgattgattttgctattcaaaaagg 121  Q
    ||||||||||  ||||||||||| ||||| || |||||||||| ||||||||||||||| |||| ||||| |||||| || ||||||||    
T  32546795 agagttcaaaaagtcatgcatagtaatgtcatgtctcctaggtccatgaatgttgtgttcacgaggattggttttgccatccaaaaagg 32546707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 33 - 121
Target Start/End: Complemental strand, 44198767 - 44198679
Alignment:
Q  33 agagttcaaagggtcatgcatagaaatgtaatttctcctaggttcatgaatgttgtgtttacgatgattgattttgctattcaaaaagg 121  Q
    |||||||| | ||| |||||||| ||||| || |||||||||| |||||||||||||||| |||| ||||||||||| || ||||||||    
T  44198767 agagttcagaaggttatgcatagcaatgtcatgtctcctaggtccatgaatgttgtgtttgcgataattgattttgccatccaaaaagg 44198679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 33 - 124
Target Start/End: Original strand, 52411998 - 52412089
Alignment:
Q  33 agagttcaaagggtcatgcatagaaatgtaatttctcctaggttcatgaatgttgtgtttacgatgattgattttgctattcaaaaaggctt 124  Q
    ||||||||||||||||||||||  ||||| || ||||||||   ||| ||| |||||||||| |||||||||||||| || |||||||||||    
T  52411998 agagttcaaagggtcatgcataacaatgtcatgtctcctagacccataaatattgtgtttacaatgattgattttgccatccaaaaaggctt 52412089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 33 - 107
Target Start/End: Complemental strand, 42206067 - 42205993
Alignment:
Q  33 agagttcaaagggtcatgcatagaaatgtaatttctcctaggttcatgaatgttgtgtttacgatgattgatttt 107  Q
    |||||| ||| ||||||||||||||||||||| | |||||| | ||| || ||||||||||||||||||||||||    
T  42206067 agagtttaaatggtcatgcatagaaatgtaatgtatcctagatccataaacgttgtgtttacgatgattgatttt 42205993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 57 - 130
Target Start/End: Original strand, 4669794 - 4669867
Alignment:
Q  57 aatgtaatttctcctaggttcatgaatgttgtgtttacgatgattgattttgctattcaaaaaggcttcgcggc 130  Q
    ||||| || |||||| ||| |||||||||||||||||||||||||||||||| ||| |||||||| || |||||    
T  4669794 aatgtcatgtctccttggtccatgaatgttgtgtttacgatgattgattttgttatccaaaaaggtttggcggc 4669867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 11 - 121
Target Start/End: Original strand, 37133083 - 37133194
Alignment:
Q  11 cagagattgtggaccttttaca-agagttcaaagggtcatgcatagaaatgtaatttctcctaggttcatgaatgttgtgtttacgatgattgattttgc 109  Q
    ||||| |||| |||||| |||| ||||||| || |||||||||||| ||||| || ||||||| ||| ||||||||||||||||  | ||||| ||||||    
T  37133083 cagaggttgttgaccttctacatagagttctaaaggtcatgcatagcaatgtcatgtctcctaagttaatgaatgttgtgtttataaggattggttttgc 37133182  T
Q  110 tattcaaaaagg 121  Q
     || ||||||||    
T  37133183 gatccaaaaagg 37133194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 12 - 109
Target Start/End: Original strand, 3443397 - 3443495
Alignment:
Q  12 agagattgtggaccttttaca-agagttcaaagggtcatgcatagaaatgtaatttctcctaggttcatgaatgttgtgtttacgatgattgattttgc 109  Q
    |||| |||| |||||| |||| ||||||||||||||||||| ||| |||||  | |||||||  |  ||||||||||||||||||||||||| ||||||    
T  3443397 agaggttgttgaccttctacatagagttcaaagggtcatgcgtaggaatgtcttgtctcctaaatctatgaatgttgtgtttacgatgattggttttgc 3443495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 18 - 101
Target Start/End: Original strand, 4763884 - 4763967
Alignment:
Q  18 tgtggaccttttaca-agagttcaaagggtcatgcatagaaatgtaatttctcctaggttcatgaatgttgtgtttacgatgatt 101  Q
    |||||||||| |||| |||||||||| ||| |||||||| ||||| || |||||| ||| |||||||||||||||||||| ||||    
T  4763884 tgtggaccttctacatagagttcaaaaggttatgcatagcaatgtcatgtctcct-ggtccatgaatgttgtgtttacgaggatt 4763967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 33 - 120
Target Start/End: Original strand, 46940880 - 46940967
Alignment:
Q  33 agagttcaaagggtcatgcatagaaatgtaatttctcctaggttcatgaatgttgtgtttacgatgattgattttgctattcaaaaag 120  Q
    |||||||||||| |||||||    ||||| ||  ||| ||||||||||||||||||||||||||  |||||||||| ||| |||||||    
T  46940880 agagttcaaaggatcatgcacgacaatgtcatgactcataggttcatgaatgttgtgtttacgaaaattgattttgttatccaaaaag 46940967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 11 - 120
Target Start/End: Original strand, 7502096 - 7502204
Alignment:
Q  11 cagagattgtggaccttttacaagagttcaaagggtcatgcatagaaatgtaatttctcctaggttcatgaatgttgtgtttacgatgattgattttgct 110  Q
    ||||| |||| |||||| |||| ||||| ||||||||||||| |  ||||| ||  ||| ||| | ||||||| || |||||||||| ||||||||||||    
T  7502096 cagaggttgttgaccttctaca-gagtttaaagggtcatgcacaacaatgtcatgactcatagatccatgaatattatgtttacgataattgattttgct 7502194  T
Q  111 attcaaaaag 120  Q
    || |||||||    
T  7502195 atccaaaaag 7502204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 35 - 124
Target Start/End: Original strand, 25094681 - 25094770
Alignment:
Q  35 agttcaaagggtcatgcatagaaatgtaatttctcctaggttcatgaatgttgtgtttacgatgattgattttgctattcaaaaaggctt 124  Q
    |||||||| |||||||||||| |||||||| |||  || || ||||||||||||||| |||| ||||  |||||| ||  ||||||||||    
T  25094681 agttcaaatggtcatgcatagcaatgtaatatcttttaagtccatgaatgttgtgttcacgaagattagttttgcaatctaaaaaggctt 25094770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 48 - 109
Target Start/End: Original strand, 38671002 - 38671063
Alignment:
Q  48 atgcatagaaatgtaatttctcctaggttcatgaatgttgtgtttacgatgattgattttgc 109  Q
    |||||||| ||||| || |||||||||| |||||||||||||| ||||| ||||| ||||||    
T  38671002 atgcatagcaatgttatgtctcctaggtccatgaatgttgtgtgtacgaggattggttttgc 38671063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 33 - 88
Target Start/End: Complemental strand, 44836 - 44781
Alignment:
Q  33 agagttcaaagggtcatgcatagaaatgtaatttctcctaggttcatgaatgttgt 88  Q
    |||||||||| |||||||||||| ||||| || | |||||||| ||||||||||||    
T  44836 agagttcaaaaggtcatgcatagcaatgtcatgtttcctaggtccatgaatgttgt 44781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 70 - 124
Target Start/End: Original strand, 7257700 - 7257754
Alignment:
Q  70 ctaggttcatgaatgttgtgtttacgatgattgattttgctattcaaaaaggctt 124  Q
    |||||| |||||||||||||||||||| ||||  |||||  ||||||||||||||    
T  7257700 ctaggtccatgaatgttgtgtttacgaagattagttttgtcattcaaaaaggctt 7257754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 32 - 106
Target Start/End: Original strand, 25190040 - 25190114
Alignment:
Q  32 aagagttcaaagggtcatgcatagaaatgtaatttctcctaggttcatgaatgttgtgtttacgatgattgattt 106  Q
    |||||||||||| |||||| ||||||||||| | || |||| ||  ||||||||||| |||| || |||||||||    
T  25190040 aagagttcaaagagtcatgaatagaaatgtagtgtcgcctaagtatatgaatgttgtatttaagaggattgattt 25190114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 14 - 119
Target Start/End: Complemental strand, 25325049 - 25324943
Alignment:
Q  14 agattgtggaccttttaca-agagttcaaagggtcatgcatagaaatgtaatttctcctaggttcatgaatgttgtgtttacgatgattgattttgctat 112  Q
    ||||||| |||||| |||| |||||||||| | |||||||||| ||||| |  | |||||  | ||||||| ||||| |||||||||||| |||||| ||    
T  25325049 agattgttgaccttctacatagagttcaaatgatcatgcatagcaatgtcaagtttcctaaatccatgaatattgtgcttacgatgattgcttttgccat 25324950  T
Q  113 tcaaaaa 119  Q
     ||||||    
T  25324949 ccaaaaa 25324943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 75 - 120
Target Start/End: Original strand, 465030 - 465075
Alignment:
Q  75 ttcatgaatgttgtgtttacgatgattgattttgctattcaaaaag 120  Q
    |||||||||||||||||||| |  ||||||||||| ||||||||||    
T  465030 ttcatgaatgttgtgtttacaaatattgattttgccattcaaaaag 465075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 71 - 120
Target Start/End: Complemental strand, 26276577 - 26276528
Alignment:
Q  71 taggttcatgaatgttgtgtttacgatgattgattttgctattcaaaaag 120  Q
    ||||| ||||||||||||||||| || |||||||||||| || |||||||    
T  26276577 taggtccatgaatgttgtgtttatgaggattgattttgccatccaaaaag 26276528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 35 - 124
Target Start/End: Original strand, 38978908 - 38978997
Alignment:
Q  35 agttcaaagggtcatgcatagaaatgtaatttctcctaggttcatgaatgttgtgtttacgatgattgattttgctattcaaaaaggctt 124  Q
    |||||||| ||| |||||||  ||||| || |||| |||||| || ||||||||||||||||  |||  |||||| || |||||||||||    
T  38978908 agttcaaaaggtgatgcataacaatgtcatgtctcataggtttatcaatgttgtgtttacgaaaattagttttgccatccaaaaaggctt 38978997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 58; Significance: 3e-24; HSPs: 20)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 33 - 130
Target Start/End: Complemental strand, 38815294 - 38815197
Alignment:
Q  33 agagttcaaagggtcatgcatagaaatgtaatttctcctaggttcatgaatgttgtgtttacgatgattgattttgctattcaaaaaggcttcgcggc 130  Q
    ||||||||||||||||||||||| ||||| || |||||||||| |||||||||||||||||||| ||||| |||| | || ||||||||||| |||||    
T  38815294 agagttcaaagggtcatgcatagcaatgtcatgtctcctaggtccatgaatgttgtgtttacgaggattggtttttccatccaaaaaggcttagcggc 38815197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 11 - 119
Target Start/End: Complemental strand, 3821247 - 3821138
Alignment:
Q  11 cagagattgtggaccttttaca-agagttcaaagggtcatgcatagaaatgtaatttctcctaggttcatgaatgttgtgtttacgatgattgattttgc 109  Q
    ||||| |||| |||||| |||| |||||||||||||| |||||||| ||||| || |||||||||||||| |||||| ||||||||| ||||||| ||||    
T  3821247 cagaggttgttgaccttctacatagagttcaaagggtaatgcatagcaatgtcatgtctcctaggttcataaatgttatgtttacgaggattgatattgc 3821148  T
Q  110 tattcaaaaa 119  Q
     ||| |||||    
T  3821147 aatttaaaaa 3821138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 33 - 121
Target Start/End: Complemental strand, 39434667 - 39434579
Alignment:
Q  33 agagttcaaagggtcatgcatagaaatgtaatttctcctaggttcatgaatgttgtgtttacgatgattgattttgctattcaaaaagg 121  Q
    ||||| |||||||| |||||||  |||||||| |||| ||| | |||||||||||||||||||| |||||||||||| || ||||||||    
T  39434667 agagtccaaagggttatgcatatcaatgtaatgtctcttagatccatgaatgttgtgtttacgaggattgattttgccatccaaaaagg 39434579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 38 - 121
Target Start/End: Complemental strand, 3187965 - 3187882
Alignment:
Q  38 tcaaagggtcatgcatagaaatgtaatttctcctaggttcatgaatgttgtgtttacgatgattgattttgctattcaaaaagg 121  Q
    ||||||||| |||||||| ||||| || |||||||||| ||||||||||||||||||||  |||| |||||| || ||||||||    
T  3187965 tcaaagggttatgcatagcaatgttatgtctcctaggtccatgaatgttgtgtttacgagaattggttttgccatccaaaaagg 3187882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 25 - 121
Target Start/End: Original strand, 22589434 - 22589531
Alignment:
Q  25 cttttaca-agagttcaaagggtcatgcatagaaatgtaatttctcctaggttcatgaatgttgtgtttacgatgattgattttgctattcaaaaagg 121  Q
    |||||||| |||||||||| |||||||||||| ||||| || |||| |||||  |||||||||||||| |||| ||||| |||||| || ||||||||    
T  22589434 cttttacatagagttcaaaaggtcatgcatagcaatgtcatgtctcataggtctatgaatgttgtgttcacgaggattggttttgccatccaaaaagg 22589531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 35 - 107
Target Start/End: Original strand, 25021923 - 25021995
Alignment:
Q  35 agttcaaagggtcatgcatagaaatgtaatttctcctaggttcatgaatgttgtgtttacgatgattgatttt 107  Q
    |||||||||||||||||| |  ||||| || |||||||||| || ||||||||||||||| ||||||||||||    
T  25021923 agttcaaagggtcatgcacaacaatgtcatatctcctaggtccaggaatgttgtgtttacaatgattgatttt 25021995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 40 - 121
Target Start/End: Complemental strand, 42659220 - 42659139
Alignment:
Q  40 aaagggtcatgcatagaaatgtaatttctcctaggttcatgaatgttgtgtttacgatgattgattttgctattcaaaaagg 121  Q
    ||||||| |||||||| ||| | || ||| ||||||||||||||||||||||||||| |||| ||||||  || ||||||||    
T  42659220 aaagggttatgcatagcaatattatgtcttctaggttcatgaatgttgtgtttacgaggattaattttgtcatccaaaaagg 42659139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 73 - 121
Target Start/End: Complemental strand, 24320297 - 24320249
Alignment:
Q  73 ggttcatgaatgttgtgtttacgatgattgattttgctattcaaaaagg 121  Q
    |||||||||||||||||||||||| ||||||||||| ||| ||||||||    
T  24320297 ggttcatgaatgttgtgtttacgaggattgattttgatatccaaaaagg 24320249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 77 - 124
Target Start/End: Complemental strand, 500198 - 500151
Alignment:
Q  77 catgaatgttgtgtttacgatgattgattttgctattcaaaaaggctt 124  Q
    |||||||||||||||||||| |||||||||| | ||||||||||||||    
T  500198 catgaatgttgtgtttacgaggattgattttaccattcaaaaaggctt 500151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 33 - 96
Target Start/End: Complemental strand, 6592575 - 6592513
Alignment:
Q  33 agagttcaaagggtcatgcatagaaatgtaatttctcctaggttcatgaatgttgtgtttacga 96  Q
    |||||||||| ||||||||||| || ||| || |||| ||||||||||||||||||||||||||    
T  6592575 agagttcaaaaggtcatgcatataa-tgtcatgtctcataggttcatgaatgttgtgtttacga 6592513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 35 - 94
Target Start/End: Complemental strand, 24125026 - 24124967
Alignment:
Q  35 agttcaaagggtcatgcatagaaatgtaatttctcctaggttcatgaatgttgtgtttac 94  Q
    |||||||| |||||||||||| ||||| || |||| ||||| ||||||||||||||||||    
T  24125026 agttcaaaaggtcatgcatagcaatgtcatgtctcataggtccatgaatgttgtgtttac 24124967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 48 - 102
Target Start/End: Complemental strand, 24451105 - 24451051
Alignment:
Q  48 atgcatagaaatgtaatttctcctaggttcatgaatgttgtgtttacgatgattg 102  Q
    |||||||| ||||| || |||||||||| ||||||||||||||| ||||||||||    
T  24451105 atgcatagcaatgtcatgtctcctaggtccatgaatgttgtgttcacgatgattg 24451051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 56 - 109
Target Start/End: Complemental strand, 8882321 - 8882268
Alignment:
Q  56 aaatgtaatttctcctaggttcatgaatgttgtgtttacgatgattgattttgc 109  Q
    |||||| || |||||||||| |||||||||||||||||||| |||| |||||||    
T  8882321 aaatgtcatgtctcctaggtccatgaatgttgtgtttacgaggattaattttgc 8882268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 12 - 108
Target Start/End: Original strand, 9259377 - 9259474
Alignment:
Q  12 agagattgtggaccttttaca-agagttcaaagggtcatgcatagaaatgtaatttctcctaggttcatgaatgttgtgtttacgatgattgattttg 108  Q
    |||| |||| |||||| |||| |||||||| ||  |||||||||| ||||| || | ||||| || |||||||||||| ||||||| |||||||||||    
T  9259377 agaggttgttgaccttctacatagagttcacagactcatgcatagcaatgtcatatatcctaagtccatgaatgttgtatttacgaagattgattttg 9259474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 35 - 107
Target Start/End: Original strand, 8540489 - 8540561
Alignment:
Q  35 agttcaaagggtcatgcatagaaatgtaatttctcctaggttcatgaatgttgtgtttacgatgattgatttt 107  Q
    ||||||||||||||||| ||  ||||| || | | |||  ||||| |||||||||||||||||||||||||||    
T  8540489 agttcaaagggtcatgcttaacaatgtcatgttttctattttcataaatgttgtgtttacgatgattgatttt 8540561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 33 - 95
Target Start/End: Complemental strand, 43823989 - 43823927
Alignment:
Q  33 agagttcaaagggtcatgcatagaaatgtaatttctcctaggttcatgaatgttgtgtttacg 95  Q
    |||||||||| |||||||||||| ||||| || ||||| || | ||| |||||||||||||||    
T  43823989 agagttcaaatggtcatgcatagcaatgtcatgtctccgagatccattaatgttgtgtttacg 43823927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 35 - 124
Target Start/End: Complemental strand, 4699868 - 4699780
Alignment:
Q  35 agttcaaagggtcatgcatagaaatgtaatttctcctaggttcatgaatgttgtgtttacgatgattgattttgctattcaaaaaggctt 124  Q
    |||||||||| ||||| |||| ||| | || || ||||||| |||||||||||||||||| | ||||  |||||| || |||||||||||    
T  4699868 agttcaaagg-tcatgaatagcaatattatgtcacctaggtccatgaatgttgtgtttacaaggattagttttgccatccaaaaaggctt 4699780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 81 - 122
Target Start/End: Complemental strand, 8619774 - 8619733
Alignment:
Q  81 aatgttgtgtttacgatgattgattttgctattcaaaaaggc 122  Q
    |||||||||||||||| ||||||||||||  |||||||||||    
T  8619774 aatgttgtgtttacgacgattgattttgcctttcaaaaaggc 8619733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 37 - 121
Target Start/End: Complemental strand, 18804608 - 18804525
Alignment:
Q  37 ttcaaagggtcatgcatagaaatgtaatttctcctaggttcatgaatgttgtgtttacgatgattgattttgctattcaaaaagg 121  Q
    |||||| |||||||||||  ||||| ||  |||||||||||| || |||| ||||||||| ||||| |||||| || ||||||||    
T  18804608 ttcaaaaggtcatgcataacaatgtcatgactcctaggttca-gagtgttttgtttacgaggattggttttgccatccaaaaagg 18804525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 33 - 109
Target Start/End: Complemental strand, 37514221 - 37514145
Alignment:
Q  33 agagttcaaagggtcatgcatagaaatgtaatttctcctaggttcatgaatgttgtgtttacgatgattgattttgc 109  Q
    |||||||||| |||||||||||  ||||| |  |||| ||||| |||||||||||| || |||| ||||||| ||||    
T  37514221 agagttcaaaaggtcatgcatatcaatgttacgtctcttaggtccatgaatgttgtattcacgaggattgatcttgc 37514145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 58; Significance: 3e-24; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 32 - 121
Target Start/End: Complemental strand, 32115719 - 32115630
Alignment:
Q  32 aagagttcaaagggtcatgcatagaaatgtaatttctcctaggttcatgaatgttgtgtttacgatgattgattttgctattcaaaaagg 121  Q
    ||||||||||| |||||||||||  ||||| || |||||||||| ||||||||||||||||||||||||||||||||||||  |||||||    
T  32115719 aagagttcaaaaggtcatgcataacaatgtcatgtctcctaggtccatgaatgttgtgtttacgatgattgattttgctatctaaaaagg 32115630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 41 - 124
Target Start/End: Original strand, 3137362 - 3137445
Alignment:
Q  41 aagggtcatgcatagaaatgtaatttctcctaggttcatgaatgttgtgtttacgatgattgattttgctattcaaaaaggctt 124  Q
    ||||||||||||||| ||||| || |||||||||| |||||||||||||||||||| ||||| |||||| || |||||||||||    
T  3137362 aagggtcatgcatagcaatgtcatgtctcctaggtccatgaatgttgtgtttacgaggattggttttgccatccaaaaaggctt 3137445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 35 - 108
Target Start/End: Complemental strand, 959579 - 959506
Alignment:
Q  35 agttcaaagggtcatgcatagaaatgtaatttctcctaggttcatgaatgttgtgtttacgatgattgattttg 108  Q
    |||||||| |||||||||||| |||||  | |||||||||| |||||||||||||||||||| |||||||||||    
T  959579 agttcaaaaggtcatgcatagcaatgttgtgtctcctaggtccatgaatgttgtgtttacgaggattgattttg 959506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 33 - 121
Target Start/End: Original strand, 17249412 - 17249500
Alignment:
Q  33 agagttcaaagggtcatgcatagaaatgtaatttctcctaggttcatgaatgttgtgtttacgatgattgattttgctattcaaaaagg 121  Q
    ||||| |||||| | ||| |||| ||||| || ||||||| ||||||||||||||||||||||| ||||| |||||| || ||||||||    
T  17249412 agagtccaaaggattatgtatagcaatgttatgtctcctaagttcatgaatgttgtgtttacgaggattggttttgccatccaaaaagg 17249500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 36 - 118
Target Start/End: Original strand, 29338189 - 29338271
Alignment:
Q  36 gttcaaagggtcatgcatagaaatgtaatttctcctaggttcatgaatgttgtgtttacgatgattgattttgctattcaaaa 118  Q
    ||||||||||||||||| |  ||||| ||  ||||||||| |||||||||||||||||| | |||||||||| |||| |||||    
T  29338189 gttcaaagggtcatgcacatcaatgtcatgactcctaggtccatgaatgttgtgtttacaaggattgatttttctatccaaaa 29338271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 35 - 120
Target Start/End: Complemental strand, 28625928 - 28625844
Alignment:
Q  35 agttcaaagggtcatgcatagaaatgtaatttctcctaggttcatgaatgttgtgtttacgatgattgattttgctattcaaaaag 120  Q
    |||||||| ||||||||||| | |||| || |||| |||||  ||||||||||||||||||  |||||||||||| ||||||||||    
T  28625928 agttcaaaaggtcatgcata-acatgtcatatctcataggtctatgaatgttgtgtttacggagattgattttgccattcaaaaag 28625844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 50 - 109
Target Start/End: Original strand, 357840 - 357899
Alignment:
Q  50 gcatagaaatgtaatttctcctaggttcatgaatgttgtgtttacgatgattgattttgc 109  Q
    |||||| ||||| || |||||||||| |||||||||||||||||||| |||| |||||||    
T  357840 gcatagcaatgttatctctcctaggtccatgaatgttgtgtttacgaagattaattttgc 357899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 33 - 119
Target Start/End: Complemental strand, 24016337 - 24016251
Alignment:
Q  33 agagttcaaagggtcatgcatagaaatgtaatttctcctaggttcatgaatgttgtgtttacgatgattgattttgctattcaaaaa 119  Q
    |||||||||||||||||||| |  ||||| || ||||||| || ||| ||| || |||||||||| |||| |||||||||| |||||    
T  24016337 agagttcaaagggtcatgcacaagaatgtcatgtctcctaagtacataaatattatgtttacgataattggttttgctattaaaaaa 24016251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 33 - 121
Target Start/End: Complemental strand, 34304496 - 34304408
Alignment:
Q  33 agagttcaaagggtcatgcatagaaatgtaatttctcctaggttcatgaatgttgtgtttacgatgattgattttgctattcaaaaagg 121  Q
    ||||| ||||| || |||||||| ||| | || |||| |||||  ||||||||||| ||||||| |||||||||||| || ||||||||    
T  34304496 agagtccaaagagttatgcatagcaatatcatgtctcataggtctatgaatgttgtatttacgaggattgattttgcaatccaaaaagg 34304408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 39 - 109
Target Start/End: Original strand, 33220824 - 33220894
Alignment:
Q  39 caaagggtcatgcatagaaatgtaatttctcctaggttcatgaatgttgtgtttacgatgattgattttgc 109  Q
    |||||||| |||||||| |||||  | ||| |||||| ||||||||||| ||||||||| |||| ||||||    
T  33220824 caaagggttatgcatagcaatgttgtgtcttctaggtccatgaatgttgcgtttacgataattggttttgc 33220894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 57; Significance: 1e-23; HSPs: 28)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 22 - 121
Target Start/End: Original strand, 21326933 - 21327033
Alignment:
Q  22 gaccttttaca-agagttcaaagggtcatgcatagaaatgtaatttctcctaggttcatgaatgttgtgtttacgatgattgattttgctattcaaaaag 120  Q
    ||||||||||| |||||||||| |||||||||||| ||||| || |||||||||| ||||||||||||||| |||| |||||||||||| || |||||||    
T  21326933 gaccttttacatagagttcaaaaggtcatgcatagcaatgttatgtctcctaggtccatgaatgttgtgttcacgaggattgattttgccatccaaaaag 21327032  T
Q  121 g 121  Q
    |    
T  21327033 g 21327033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 33 - 120
Target Start/End: Complemental strand, 48539181 - 48539094
Alignment:
Q  33 agagttcaaagggtcatgcatagaaatgtaatttctcctaggttcatgaatgttgtgtttacgatgattgattttgctattcaaaaag 120  Q
    ||||| |||| |||||||||||| ||||| || |||||||||| |||||||||||||||||||| ||||| |||||| || |||||||    
T  48539181 agagtccaaaaggtcatgcatagcaatgtcatgtctcctaggtccatgaatgttgtgtttacgaggattggttttgccatccaaaaag 48539094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 33 - 119
Target Start/End: Original strand, 41117877 - 41117963
Alignment:
Q  33 agagttcaaagggtcatgcatagaaatgtaatttctcctaggttcatgaatgttgtgtttacgatgattgattttgctattcaaaaa 119  Q
    |||||| ||| | |||||||||| ||||| || | |||||||| ||||||||||||||| |||||||||||||||||||| ||||||    
T  41117877 agagtttaaaagatcatgcatagcaatgtcatgtttcctaggtccatgaatgttgtgttcacgatgattgattttgctatccaaaaa 41117963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 11 - 119
Target Start/End: Complemental strand, 43856897 - 43856788
Alignment:
Q  11 cagagattgtggaccttttaca-agagttcaaagggtcatgcatagaaatgtaatttctcctaggttcatgaatgttgtgtttacgatgattgattttgc 109  Q
    ||||| |||| |||||| |||| |||||||||||||||||||| |  ||||| ||  ||||||||| |||||||||| |||||||||  |||||||||||    
T  43856897 cagaggttgttgaccttctacatagagttcaaagggtcatgcacaacaatgtcatgactcctaggtccatgaatgttatgtttacgagaattgattttgc 43856798  T
Q  110 tattcaaaaa 119  Q
    ||| ||||||    
T  43856797 tatccaaaaa 43856788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 11 - 101
Target Start/End: Complemental strand, 4501282 - 4501191
Alignment:
Q  11 cagagattgtggaccttttaca-agagttcaaagggtcatgcatagaaatgtaatttctcctaggttcatgaatgttgtgtttacgatgatt 101  Q
    ||||| |||| |||||| |||| |||||||||| | |||||||||| ||||| || |||||||| |||||||||||||||||||||| ||||    
T  4501282 cagaggttgttgaccttctacatagagttcaaaagttcatgcatagcaatgtcatgtctcctagattcatgaatgttgtgtttacgaggatt 4501191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 11 - 109
Target Start/End: Complemental strand, 27521494 - 27521395
Alignment:
Q  11 cagagattgtggaccttttaca-agagttcaaagggtcatgcatagaaatgtaatttctcctaggttcatgaatgttgtgtttacgatgattgattttgc 109  Q
    ||||| |||| |||||| |||| |||||||||| |||||||||||  ||||| || ||||||| ||  ||||||||||||||||||| ||||||||||||    
T  27521494 cagaggttgttgaccttctacatagagttcaaaaggtcatgcataacaatgtcatgtctcctaagtctatgaatgttgtgtttacgaggattgattttgc 27521395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 11 - 91
Target Start/End: Complemental strand, 19277316 - 19277235
Alignment:
Q  11 cagagattgtggaccttttaca-agagttcaaagggtcatgcatagaaatgtaatttctcctaggttcatgaatgttgtgtt 91  Q
    ||||| |||| |||||| |||| |||||||||| |||||||||||| ||||| || |||||||||| |||||||||||||||    
T  19277316 cagaggttgttgaccttctacatagagttcaaaaggtcatgcatagcaatgtcatgtctcctaggtccatgaatgttgtgtt 19277235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 36 - 109
Target Start/End: Complemental strand, 23037542 - 23037469
Alignment:
Q  36 gttcaaagggtcatgcatagaaatgtaatttctcctaggttcatgaatgttgtgtttacgatgattgattttgc 109  Q
    ||||||||||| |||||||| ||||| ||||||| |||||  |||||| |||||||||||| ||||||||||||    
T  23037542 gttcaaagggttatgcatagcaatgtcatttctcttaggtctatgaattttgtgtttacgaggattgattttgc 23037469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 35 - 120
Target Start/End: Original strand, 30216167 - 30216252
Alignment:
Q  35 agttcaaagggtcatgcatagaaatgtaatttctcctaggttcatgaatgttgtgtttacgatgattgattttgctattcaaaaag 120  Q
    |||||||| |||||||||||| ||||| || ||||||||||  |||||||||||||| |||| ||| |||||||  ||||||||||    
T  30216167 agttcaaatggtcatgcatagcaatgtcatatctcctaggtctatgaatgttgtgttcacgaggatcgattttgtcattcaaaaag 30216252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 11 - 129
Target Start/End: Complemental strand, 22198009 - 22197891
Alignment:
Q  11 cagagattgtggaccttttaca-agagttcaaagggtcatgcatagaaatgtaatttctcctaggttcatgaatgttgtgtttacgatgattgattttgc 109  Q
    ||||| |||| |||||| |||| |||||||||| ||| ||| |||| || || || ||||||||||  |||||||||||||||||||| ||||||||||     
T  22198009 cagaggttgttgaccttctacatagagttcaaaaggttatg-atagcaacgtcatgtctcctaggtcaatgaatgttgtgtttacgataattgattttgt 22197911  T
Q  110 tattcaaaaaggcttcgcgg 129  Q
     || ||||||||||| ||||    
T  22197910 catccaaaaaggcttggcgg 22197891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 11 - 129
Target Start/End: Original strand, 22239812 - 22239930
Alignment:
Q  11 cagagattgtggaccttttaca-agagttcaaagggtcatgcatagaaatgtaatttctcctaggttcatgaatgttgtgtttacgatgattgattttgc 109  Q
    ||||| |||| |||||| |||| |||||||||| ||| ||| |||| || || || ||||||||||  |||||||||||||||||||| ||||||||||     
T  22239812 cagaggttgttgaccttctacatagagttcaaaaggttatg-atagcaacgtcatgtctcctaggtcaatgaatgttgtgtttacgataattgattttgt 22239910  T
Q  110 tattcaaaaaggcttcgcgg 129  Q
     || ||||||||||| ||||    
T  22239911 catccaaaaaggcttggcgg 22239930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 33 - 108
Target Start/End: Complemental strand, 24527589 - 24527514
Alignment:
Q  33 agagttcaaagggtcatgcatagaaatgtaatttctcctaggttcatgaatgttgtgtttacgatgattgattttg 108  Q
    |||||||||| |||||||||||| ||||| ||||||||| ||| |||||||||||| || |||| ||||| |||||    
T  24527589 agagttcaaaaggtcatgcatagcaatgtcatttctccttggtccatgaatgttgtattcacgaggattggttttg 24527514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 11 - 120
Target Start/End: Original strand, 5972300 - 5972410
Alignment:
Q  11 cagagattgtggaccttttaca-agagttcaaagggtcatgcatagaaatgtaatttctcctaggttcatgaatgttgtgtttacgatgattgattttgc 109  Q
    ||||| |||| |||||| |||| ||||||||||  ||||||||||| ||||| |||||||| || |  ||||||||||||||||||| ||||  ||||||    
T  5972300 cagaggttgttgaccttctacatagagttcaaaatgtcatgcatagtaatgtcatttctcccagatctatgaatgttgtgtttacgaggattagttttgc 5972399  T
Q  110 tattcaaaaag 120  Q
     || |||||||    
T  5972400 catccaaaaag 5972410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 33 - 107
Target Start/End: Original strand, 25187038 - 25187112
Alignment:
Q  33 agagttcaaagggtcatgcatagaaatgtaatttctcctaggttcatgaatgttgtgtttacgatgattgatttt 107  Q
    |||||||||| |||||||||||| ||||| || |||||||| | |||||||||||||||  | ||||||||||||    
T  25187038 agagttcaaaaggtcatgcatagcaatgtcatgtctcctagatccatgaatgttgtgttcccaatgattgatttt 25187112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 33 - 119
Target Start/End: Original strand, 28517394 - 28517480
Alignment:
Q  33 agagttcaaagggtcatgcatagaaatgtaatttctcctaggttcatgaatgttgtgtttacgatgattgattttgctattcaaaaa 119  Q
    ||||| |||||||| |||||||  ||||| || ||||||| || |||||||||||||||||||| ||||| |||||| || ||||||    
T  28517394 agagtccaaagggttatgcataacaatgttatgtctcctaagtccatgaatgttgtgtttacgaggattggttttgccatccaaaaa 28517480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 39 - 121
Target Start/End: Original strand, 45003010 - 45003092
Alignment:
Q  39 caaagggtcatgcatagaaatgtaatttctcctaggttcatgaatgttgtgtttacgatgattgattttgctattcaaaaagg 121  Q
    ||||| || |||||||| ||||| || |||| ||||  |||||||||||||||||||| |||||||||||| || ||||||||    
T  45003010 caaagagttatgcatagcaatgttatgtctcataggaccatgaatgttgtgtttacgaagattgattttgccatccaaaaagg 45003092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 11 - 119
Target Start/End: Original strand, 40726564 - 40726673
Alignment:
Q  11 cagagattgtggaccttttaca-agagttcaaagggtcatgcatagaaatgtaatttctcctaggttcatgaatgttgtgtttacgatgattgattttgc 109  Q
    ||||| |||| |||||| |||| ||||| |||||||| |||||||  ||||  || |||||||| | ||||||||||||||||| || ||||||||||||    
T  40726564 cagaggttgttgaccttctacatagagtccaaagggttatgcataacaatgctatgtctcctagatccatgaatgttgtgtttatgaggattgattttgc 40726663  T
Q  110 tattcaaaaa 119  Q
     || ||||||    
T  40726664 catccaaaaa 40726673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 44 - 112
Target Start/End: Original strand, 36558985 - 36559053
Alignment:
Q  44 ggtcatgcatagaaatgtaatttctcctaggttcatgaatgttgtgtttacgatgattgattttgctat 112  Q
    ||||||||||| |||| | || |||  ||||| ||||||||||||||||||||||| ||||||||||||    
T  36558985 ggtcatgcatataaatatcatgtcttataggtccatgaatgttgtgtttacgatgaatgattttgctat 36559053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 33 - 109
Target Start/End: Original strand, 45613949 - 45614025
Alignment:
Q  33 agagttcaaagggtcatgcatagaaatgtaatttctcctaggttcatgaatgttgtgtttacgatgattgattttgc 109  Q
    |||||||||| | |||||||||  ||||| |  |||||||||| |||||||||||||||||||| ||||| ||||||    
T  45613949 agagttcaaaagttcatgcataacaatgtcaaatctcctaggtccatgaatgttgtgtttacgaggattggttttgc 45614025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 11 - 109
Target Start/End: Complemental strand, 5825296 - 5825197
Alignment:
Q  11 cagagattgtggaccttttaca-agagttcaaagggtcatgcatagaaatgtaatttctcctaggttcatgaatgttgtgtttacgatgattgattttgc 109  Q
    ||||| |||| |||||| |||| |||||  ||||||| |||||||| ||||| || ||||||||||  ||| ||||||||||||||| ||||| ||||||    
T  5825296 cagaggttgttgaccttctacatagagtcgaaagggttatgcatagcaatgttatgtctcctaggtctatggatgttgtgtttacgaggattggttttgc 5825197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 57 - 120
Target Start/End: Original strand, 27027761 - 27027824
Alignment:
Q  57 aatgtaatttctcctaggttcatgaatgttgtgtttacgatgattgattttgctattcaaaaag 120  Q
    ||||| || |||||||||| ||||||||||||||| |||| ||||| ||||||||| |||||||    
T  27027761 aatgtcatgtctcctaggtccatgaatgttgtgttcacgaggattggttttgctatccaaaaag 27027824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 67 - 121
Target Start/End: Complemental strand, 2904346 - 2904292
Alignment:
Q  67 ctcctaggttcatgaatgttgtgtttacgatgattgattttgctattcaaaaagg 121  Q
    |||||||||  |||||||||||||||||||| |||| ||||||||| ||||||||    
T  2904346 ctcctaggtctatgaatgttgtgtttacgataattggttttgctatccaaaaagg 2904292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 37 - 130
Target Start/End: Original strand, 43333941 - 43334034
Alignment:
Q  37 ttcaaagggtcatgcatagaaatgtaatttctcctaggttcatgaatgttgtgtttacgatgattgattttgctattcaaaaaggcttcgcggc 130  Q
    |||||| |||||||||||  ||||  || |||||||| |  |||||||||| ||||| |||||||| |||||| |||||||||| ||| |||||    
T  43333941 ttcaaaaggtcatgcatatcaatgacatgtctcctagatctatgaatgttgagtttatgatgattggttttgccattcaaaaagacttggcggc 43334034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 33 - 121
Target Start/End: Complemental strand, 982949 - 982861
Alignment:
Q  33 agagttcaaagggtcatgcatagaaatgtaatttctcctaggttcatgaatgttgtgtttacgatgattgattttgctattcaaaaagg 121  Q
    |||||||||| |||||||||||  ||||| || ||| ||| || ||||||||||||||| |||| ||||| | |||| || ||||||||    
T  982949 agagttcaaaaggtcatgcatatcaatgtcatgtcttctatgtccatgaatgttgtgttcacgaggattggtattgccatccaaaaagg 982861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 33 - 104
Target Start/End: Complemental strand, 10905118 - 10905047
Alignment:
Q  33 agagttcaaagggtcatgcatagaaatgtaatttctcctaggttcatgaatgttgtgtttacgatgattgat 104  Q
    ||||||||||| | ||||||||  ||||| || |||||||||| ||||||||| |||||||| | |||||||    
T  10905118 agagttcaaagagccatgcataacaatgtcatgtctcctaggtccatgaatgtcgtgtttacaaggattgat 10905047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 45 - 119
Target Start/End: Complemental strand, 34772770 - 34772696
Alignment:
Q  45 gtcatgcatagaaatgtaatttctcctaggttcatgaatgttgtgtttacgatgattgattttgctattcaaaaa 119  Q
    ||||||||||  ||||| || | | |||||| ||||||| ||||||||||||| |||| |||||| |||||||||    
T  34772770 gtcatgcatatcaatgtcatgttttctaggtccatgaatattgtgtttacgataattggttttgccattcaaaaa 34772696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 66 - 120
Target Start/End: Original strand, 42295324 - 42295378
Alignment:
Q  66 tctcctaggttcatgaatgttgtgtttacgatgattgattttgctattcaaaaag 120  Q
    |||||||||| ||||||| |||||||||||||||||  ||||| ||| |||||||    
T  42295324 tctcctaggtccatgaatcttgtgtttacgatgattagttttgttatccaaaaag 42295378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 66 - 94
Target Start/End: Original strand, 45974739 - 45974767
Alignment:
Q  66 tctcctaggttcatgaatgttgtgtttac 94  Q
    |||||||||||||||||||||||||||||    
T  45974739 tctcctaggttcatgaatgttgtgtttac 45974767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 54; Significance: 8e-22; HSPs: 29)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 11 - 119
Target Start/End: Complemental strand, 4419286 - 4419177
Alignment:
Q  11 cagagattgtggaccttttaca-agagttcaaagggtcatgcatagaaatgtaatttctcctaggttcatgaatgttgtgtttacgatgattgattttgc 109  Q
    ||||| |||| |||||| |||| |||||||||||||| |||||||  ||||| || |||||||||| |||||||||||||||||||||||||| ||||||    
T  4419286 cagaggttgttgaccttctacatagagttcaaagggttatgcataacaatgttatgtctcctaggtccatgaatgttgtgtttacgatgattggttttgc 4419187  T
Q  110 tattcaaaaa 119  Q
     || ||||||    
T  4419186 catccaaaaa 4419177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 33 - 121
Target Start/End: Complemental strand, 3329996 - 3329908
Alignment:
Q  33 agagttcaaagggtcatgcatagaaatgtaatttctcctaggttcatgaatgttgtgtttacgatgattgattttgctattcaaaaagg 121  Q
    ||||| |||||||| |||||||| ||||| || |||||||||| |||||||| ||||||||||||||||| |||||| || ||||||||    
T  3329996 agagtccaaagggttatgcatagcaatgttatgtctcctaggtccatgaatgctgtgtttacgatgattggttttgccatccaaaaagg 3329908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 34 - 120
Target Start/End: Complemental strand, 23242899 - 23242813
Alignment:
Q  34 gagttcaaagggtcatgcatagaaatgtaatttctcctaggttcatgaatgttgtgtttacgatgattgattttgctattcaaaaag 120  Q
    ||||| |||||||||||||||  ||||| ||||||| ||||| ||| ||| |||||||||||||||||||||||| ||| |||||||    
T  23242899 gagtttaaagggtcatgcataacaatgtcatttctcttaggtccataaatattgtgtttacgatgattgattttgttatccaaaaag 23242813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 33 - 106
Target Start/End: Complemental strand, 16955460 - 16955387
Alignment:
Q  33 agagttcaaagggtcatgcatagaaatgtaatttctcctaggttcatgaatgttgtgtttacgatgattgattt 106  Q
    |||||||||| |||||||||||| ||||| || |||||||||  |||||||||||||||||||| |||||||||    
T  16955460 agagttcaaaaggtcatgcatagcaatgtcatgtctcctaggcccatgaatgttgtgtttacgaggattgattt 16955387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 35 - 169
Target Start/End: Complemental strand, 8738203 - 8738069
Alignment:
Q  35 agttcaaagggtcatgcatagaaatgtaatttctcctaggttcatgaatgttgtgtttacgatgattgattttgctattcaaaaaggcttcgcggctcag 134  Q
    |||||||||| ||||||||| |||||| || |||| |||||||||||||||||||| ||| | |||||||||||  || |||||| | || ||||| |||    
T  8738203 agttcaaaggctcatgcataaaaatgtcatgtctcttaggttcatgaatgttgtgtatacaaagattgattttgtcatccaaaaaagtttagcggcgcag 8738104  T
Q  135 tgttttacctgtttgtctttcactcatgtgtaatt 169  Q
    | | ||| | | ||  |||||| ||||||||||||    
T  8738103 tttgttatccgcttacctttcattcatgtgtaatt 8738069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 12 - 121
Target Start/End: Complemental strand, 25504317 - 25504207
Alignment:
Q  12 agagattgtggaccttttaca-agagttcaaagggtcatgcatagaaatgtaatttctcctaggttcatgaatgttgtgtttacgatgattgattttgct 110  Q
    ||||| ||| ||||||||| | |||||| ||| |||||||||||| ||||| || |||| ||||| ||||||| ||||||||| || ||||| ||||||     
T  25504317 agagactgttgaccttttaaatagagtttaaaaggtcatgcatagtaatgtcatgtctcataggtccatgaatattgtgtttatgaggattgcttttgcc 25504218  T
Q  111 attcaaaaagg 121  Q
    |||||||||||    
T  25504217 attcaaaaagg 25504207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 39 - 120
Target Start/End: Original strand, 50001039 - 50001120
Alignment:
Q  39 caaagggtcatgcatagaaatgtaatttctcctaggttcatgaatgttgtgtttacgatgattgattttgctattcaaaaag 120  Q
    |||||||| |||||||| ||||| || |||||||| | ||| |||||||||||||||| |||||||||||| || |||||||    
T  50001039 caaagggttatgcatagcaatgttatgtctcctagatccataaatgttgtgtttacgaagattgattttgccatccaaaaag 50001120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 33 - 121
Target Start/End: Complemental strand, 53170513 - 53170424
Alignment:
Q  33 agagttcaaagggtcatgcatagaaatgtaatttctcctag-gttcatgaatgttgtgtttacgatgattgattttgctattcaaaaagg 121  Q
    |||||||||| |||||||||||| ||||| || |||||||  | |||||||||||||||| |||| |||||||||||||||  |||||||    
T  53170513 agagttcaaaaggtcatgcatagcaatgtcatgtctcctataggtcatgaatgttgtgttcacgaggattgattttgctatctaaaaagg 53170424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 38 - 102
Target Start/End: Original strand, 18981651 - 18981714
Alignment:
Q  38 tcaaagggtcatgcatagaaatgtaatttctcctaggttcatgaatgttgtgtttacgatgattg 102  Q
    |||||||||||||||||| ||||| || |||| ||||| ||||||||||||||||||||||||||    
T  18981651 tcaaagggtcatgcatagtaatgtcatgtctc-taggtccatgaatgttgtgtttacgatgattg 18981714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 41 - 124
Target Start/End: Original strand, 23233229 - 23233312
Alignment:
Q  41 aagggtcatgcatagaaatgtaatttctcctaggttcatgaatgttgtgtttacgatgattgattttgctattcaaaaaggctt 124  Q
    ||||||||||||||  ||||| || | |||||| |||||||||||||| |||| || ||||||||| ||||| |||||||||||    
T  23233229 aagggtcatgcataataatgtcatgtttcctagattcatgaatgttgtctttatgaggattgatttggctatccaaaaaggctt 23233312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 17 - 119
Target Start/End: Original strand, 55933550 - 55933653
Alignment:
Q  17 ttgtggaccttttaca-agagttcaaagggtcatgcatagaaatgtaatttctcctaggttcatgaatgttgtgtttacgatgattgattttgctattca 115  Q
    |||| |||||| |||| ||||| |||||||| || ||||  ||| | || |||||||||| | ||||||||||||||||||||||||||||||| || ||    
T  55933550 ttgttgaccttctacatagagtccaaagggttatacataacaatattatgtctcctaggtccgtgaatgttgtgtttacgatgattgattttgccatcca 55933649  T
Q  116 aaaa 119  Q
    ||||    
T  55933650 aaaa 55933653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 48 - 109
Target Start/End: Original strand, 48657037 - 48657098
Alignment:
Q  48 atgcatagaaatgtaatttctcctaggttcatgaatgttgtgtttacgatgattgattttgc 109  Q
    |||||||| ||||| || |||| |||||  ||||||||||||||||||||||||||||||||    
T  48657037 atgcatagcaatgttatgtctcataggtctatgaatgttgtgtttacgatgattgattttgc 48657098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 33 - 109
Target Start/End: Complemental strand, 23255713 - 23255637
Alignment:
Q  33 agagttcaaagggtcatgcatagaaatgtaatttctcctaggttcatgaatgttgtgtttacgatgattgattttgc 109  Q
    ||||| |||||||| |||||||  ||||| || ||||||| || ||||||| |||||||||||| ||||||||||||    
T  23255713 agagtccaaagggttatgcataacaatgttatgtctcctaagtccatgaatattgtgtttacgaggattgattttgc 23255637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 33 - 121
Target Start/End: Original strand, 30940839 - 30940927
Alignment:
Q  33 agagttcaaagggtcatgcatagaaatgtaatttctcctaggttcatgaatgttgtgtttacgatgattgattttgctattcaaaaagg 121  Q
    |||||||||| |||||||||||  ||||| || | ||||||||  |||||||||||||| | || |||||||||||| || ||||||||    
T  30940839 agagttcaaaaggtcatgcataacaatgtcatatatcctaggtctatgaatgttgtgttcatgaggattgattttgccatccaaaaagg 30940927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 11 - 119
Target Start/End: Original strand, 600776 - 600885
Alignment:
Q  11 cagagattgtggaccttttaca-agagttcaaagggtcatgcatagaaatgtaatttctcctaggttcatgaatgttgtgtttacgatgattgattttgc 109  Q
    ||||| |||| |||||| |||| |||||||||| ||||||| |||   |||| || |||||||||| ||| |||| ||||||||||||||||  ||||||    
T  600776 cagaggttgttgaccttctacatagagttcaaaaggtcatgtataactatgtcatgtctcctaggtccattaatgctgtgtttacgatgattagttttgc 600875  T
Q  110 tattcaaaaa 119  Q
     || ||||||    
T  600876 catccaaaaa 600885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 40 - 121
Target Start/End: Complemental strand, 53619579 - 53619498
Alignment:
Q  40 aaagggtcatgcatagaaatgtaatttctcctaggttcatgaatgttgtgtttacgatgattgattttgctattcaaaaagg 121  Q
    ||||||| |||||||  ||||| || |||| ||||| ||||||||||||||||||||  |||| |||||| || ||||||||    
T  53619579 aaagggttatgcataacaatgttatgtctcttaggtccatgaatgttgtgtttacgagaattggttttgccatccaaaaagg 53619498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 33 - 101
Target Start/End: Original strand, 38535676 - 38535744
Alignment:
Q  33 agagttcaaagggtcatgcatagaaatgtaatttctcctaggttcatgaatgttgtgtttacgatgatt 101  Q
    ||||||||||| ||||||||||| ||||| || |||  ||||| |||| ||||||||||||||| ||||    
T  38535676 agagttcaaagagtcatgcatagcaatgtcatgtcttataggtccatggatgttgtgtttacgaggatt 38535744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 33 - 121
Target Start/End: Complemental strand, 39001397 - 39001309
Alignment:
Q  33 agagttcaaagggtcatgcatagaaatgtaatttctcctaggttcatgaatgttgtgtttacgatgattgattttgctattcaaaaagg 121  Q
    ||||| |||||| | |||||||  |||||  | |||||||||| |||||||||||||||||||| ||||| |||||  || ||||||||    
T  39001397 agagtccaaaggattatgcataacaatgttgtgtctcctaggtccatgaatgttgtgtttacgaggattggttttgtcatccaaaaagg 39001309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 35 - 108
Target Start/End: Original strand, 49344248 - 49344325
Alignment:
Q  35 agttcaaagggtcatgcatagaaatgtaatttctcctaggttcatg----aatgttgtgtttacgatgattgattttg 108  Q
    |||| |||||||||  |||||||||||||| |||||||| | ||||    ||||||||||||| ||||||||||||||    
T  49344248 agtttaaagggtcactcatagaaatgtaatgtctcctagatccatgaattaatgttgtgtttatgatgattgattttg 49344325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 57 - 121
Target Start/End: Original strand, 50442610 - 50442674
Alignment:
Q  57 aatgtaatttctcctaggttcatgaatgttgtgtttacgatgattgattttgctattcaaaaagg 121  Q
    ||||| || ||||||||||||||| |||||||||||| || ||||| |||||| || ||||||||    
T  50442610 aatgttatgtctcctaggttcatggatgttgtgtttaagaggattggttttgccatccaaaaagg 50442674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 72 - 107
Target Start/End: Complemental strand, 1041386 - 1041351
Alignment:
Q  72 aggttcatgaatgttgtgtttacgatgattgatttt 107  Q
    ||||||||||||||||||||| ||||||||||||||    
T  1041386 aggttcatgaatgttgtgttttcgatgattgatttt 1041351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 35 - 130
Target Start/End: Complemental strand, 26521486 - 26521392
Alignment:
Q  35 agttcaaagggtcatgcatagaaatgtaatttctcctaggttcatgaatgttgtgtttacgatgattgattttgctattcaaaaaggcttcgcggc 130  Q
    ||||||||||||||||| ||| ||||| || | |||||||  ||||| |||||||||||||| ||||| |||||  || |||||||| || |||||    
T  26521486 agttcaaagggtcatgcgtagcaatgtcatgtatcctaggcccatga-tgttgtgtttacgaggattggttttgtcatccaaaaaggtttagcggc 26521392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 33 - 108
Target Start/End: Original strand, 34107803 - 34107878
Alignment:
Q  33 agagttcaaagggtcatgcatagaaatgtaatttctcctaggttcatgaatgttgtgtttacgatgattgattttg 108  Q
    ||||||||||  ||||||||||  ||||| || |||||||| | ||||||||||||||| |||| ||||| |||||    
T  34107803 agagttcaaaaagtcatgcataacaatgttatgtctcctagatccatgaatgttgtgttcacgaggattggttttg 34107878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 33 - 120
Target Start/End: Original strand, 50464403 - 50464490
Alignment:
Q  33 agagttcaaagggtcatgcatagaaatgtaatttctcctaggttcatgaatgttgtgtttacgatgattgattttgctattcaaaaag 120  Q
    |||||| |||||||||||||||  ||||| || ||||| |  |  ||||||||||||||||||| |||| ||||||| || |||||||    
T  50464403 agagtttaaagggtcatgcataacaatgtcatgtctcccaaatatatgaatgttgtgtttacgaggatttattttgccatccaaaaag 50464490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 11 - 109
Target Start/End: Original strand, 56462190 - 56462289
Alignment:
Q  11 cagagattgtggaccttttaca-agagttcaaagggtcatgcatagaaatgtaatttctcctaggttcatgaatgttgtgtttacgatgattgattttgc 109  Q
    ||||| |||| |||||| |||| |||||||||||| ||||||||   ||||| || ||||||| || ||| ||||||||||||||||  |||| ||||||    
T  56462190 cagaggttgttgaccttctacatagagttcaaaggatcatgcatgacaatgtcatgtctcctaagtccataaatgttgtgtttacgagaattggttttgc 56462289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 142 - 176
Target Start/End: Original strand, 214961 - 214995
Alignment:
Q  142 cctgtttgtctttcactcatgtgtaattttcatat 176  Q
    ||||||||| |||||||||||||||||||||||||    
T  214961 cctgtttgtatttcactcatgtgtaattttcatat 214995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 23 - 91
Target Start/End: Original strand, 6865916 - 6865984
Alignment:
Q  23 accttttaca-agagttcaaagggtcatgcatagaaatgtaatttctcctaggttcatgaatgttgtgtt 91  Q
    |||||||||| |||||||||||||| |||||||| ||||| || ||||||| | ||||||||||| ||||    
T  6865916 accttttacatagagttcaaagggtaatgcatagcaatgtcatgtctccta-gatcatgaatgttctgtt 6865984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 35 - 120
Target Start/End: Complemental strand, 45661689 - 45661604
Alignment:
Q  35 agttcaaagggtcatgcatagaaatgtaatttctcctaggttcatgaatgttgtgtttacgatgattgattttgctattcaaaaag 120  Q
    ||||||||||||||| || |  ||||| ||  ||| ||||| ||||||| |||||||||||| ||||| |||| |||| |||||||    
T  45661689 agttcaaagggtcatacacaacaatgtcataactcgtaggtccatgaatattgtgtttacgaggattggttttactatccaaaaag 45661604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 11 - 94
Target Start/End: Complemental strand, 132408 - 132324
Alignment:
Q  11 cagagattgtggaccttttaca-agagttcaaagggtcatgcatagaaatgtaatttctcctaggttcatgaatgttgtgtttac 94  Q
    |||||||||| ||| || |||| |||||| ||||||||| |||||  ||||| || |||  ||||||||||| ||||||||||||    
T  132408 cagagattgttgacattctacacagagtttaaagggtcaagcataacaatgtcatgtcttttaggttcatgattgttgtgtttac 132324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 54; Significance: 8e-22; HSPs: 17)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 9 - 121
Target Start/End: Complemental strand, 22346920 - 22346807
Alignment:
Q  9 agcagagattgtggaccttttaca-agagttcaaagggtcatgcatagaaatgtaatttctcctaggttcatgaatgttgtgtttacgatgattgatttt 107  Q
    ||||||| |||| |||||| |||| |||||||||| |||||||||||||||||| || ||||||||||| |||||||||||||| |||| ||||  ||||    
T  22346920 agcagaggttgttgaccttctacacagagttcaaaaggtcatgcatagaaatgtcatgtctcctaggtttatgaatgttgtgttcacgaggattagtttt 22346821  T
Q  108 gctattcaaaaagg 121  Q
    || || ||||||||    
T  22346820 gccatccaaaaagg 22346807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 11 - 119
Target Start/End: Complemental strand, 34644589 - 34644480
Alignment:
Q  11 cagagattgtggaccttttaca-agagttcaaagggtcatgcatagaaatgtaatttctcctaggttcatgaatgttgtgtttacgatgattgattttgc 109  Q
    ||||| |||| |||||| |||| ||||| |||||||| |||||||  ||||| || |||||||||| |||||||||||||||||||||||||||||||||    
T  34644589 cagaggttgttgaccttctacatagagtccaaagggttatgcatatcaatgttatgtctcctaggtccatgaatgttgtgtttacgatgattgattttgc 34644490  T
Q  110 tattcaaaaa 119  Q
     || ||||||    
T  34644489 catccaaaaa 34644480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 11 - 130
Target Start/End: Complemental strand, 2898725 - 2898605
Alignment:
Q  11 cagagattgtggaccttttaca-agagttcaaagggtcatgcatagaaatgtaatttctcctaggttcatgaatgttgtgtttacgatgattgattttgc 109  Q
    ||||| |||| |||||| |||| |||||||||| | |||||||||  ||| | || |||| || | |||||||||||||||||| || ||||||||||||    
T  2898725 cagaggttgttgaccttctacatagagttcaaaagatcatgcataacaatatcatgtctcatacgatcatgaatgttgtgtttaagaggattgattttgc 2898626  T
Q  110 tattcaaaaaggcttcgcggc 130  Q
     || ||||||||||| |||||    
T  2898625 catccaaaaaggcttagcggc 2898605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 33 - 109
Target Start/End: Original strand, 24177618 - 24177694
Alignment:
Q  33 agagttcaaagggtcatgcatagaaatgtaatttctcctaggttcatgaatgttgtgtttacgatgattgattttgc 109  Q
    ||||||||||  ||||||||||| ||||| || |||||||||| ||||||||||||||| |||| ||||| ||||||    
T  24177618 agagttcaaaaagtcatgcatagcaatgtcatatctcctaggtccatgaatgttgtgttcacgaggattggttttgc 24177694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 33 - 130
Target Start/End: Original strand, 31737430 - 31737526
Alignment:
Q  33 agagttcaaagggtcatgcatagaaatgtaatttctcctaggttcatgaatgttgtgtttacgatgattgattttgctattcaaaaaggcttcgcggc 130  Q
    |||||||||| |||||||||||  ||||| || | |||||| | ||||||| | |||||||||| |||||||||||| || ||||||||||| |||||    
T  31737430 agagttcaaaaggtcatgcatatcaatgttatgtttcctagatccatgaat-tagtgtttacgaggattgattttgccatccaaaaaggcttggcggc 31737526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 40 - 109
Target Start/End: Original strand, 40515989 - 40516057
Alignment:
Q  40 aaagggtcatgcatagaaatgtaatttctcctaggttcatgaatgttgtgtttacgatgattgattttgc 109  Q
    |||||||||||||| | ||| |||| |||| ||| ||||||||||||||||||||||| |||||||||||    
T  40515989 aaagggtcatgcatggcaatataatgtctc-tagattcatgaatgttgtgtttacgattattgattttgc 40516057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 11 - 130
Target Start/End: Complemental strand, 2764502 - 2764382
Alignment:
Q  11 cagagattgtggaccttttaca-agagttcaaagggtcatgcatagaaatgtaatttctcctaggttcatgaatgttgtgtttacgatgattgattttgc 109  Q
    ||||| |||| |||||| |||| | ||| |||||||| ||||| |  ||||| || |||| ||||| ||| ||||||||||||||||||||||||||| |    
T  2764502 cagaggttgttgaccttctacataaagtccaaagggttatgcaaatcaatgttatgtctcttaggtccataaatgttgtgtttacgatgattgattttac 2764403  T
Q  110 tattcaaaaaggcttcgcggc 130  Q
     || |||||||| || |||||    
T  2764402 catccaaaaaggtttagcggc 2764382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 33 - 121
Target Start/End: Complemental strand, 21473003 - 21472915
Alignment:
Q  33 agagttcaaagggtcatgcatagaaatgtaatttctcctaggttcatgaatgttgtgtttacgatgattgattttgctattcaaaaagg 121  Q
    |||||||||| |||||||||||| ||||| || |||||||||| ||||||||||| ||| | || || || |||||| || ||||||||    
T  21473003 agagttcaaaaggtcatgcatagcaatgtcatgtctcctaggtccatgaatgttgcgttcaggaggactggttttgccatccaaaaagg 21472915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 33 - 119
Target Start/End: Original strand, 6670212 - 6670298
Alignment:
Q  33 agagttcaaagggtcatgcatagaaatgtaatttctcctaggttcatgaatgttgtgtttacgatgattgattttgctattcaaaaa 119  Q
    ||||||||||| |||||||||   ||||| || |||||||| |||||||||||| | |||||||| ||| ||||||| || ||||||    
T  6670212 agagttcaaagagtcatgcattacaatgtcatatctcctagattcatgaatgttatatttacgataattaattttgccatccaaaaa 6670298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 66 - 121
Target Start/End: Complemental strand, 4611156 - 4611101
Alignment:
Q  66 tctcctaggttcatgaatgttgtgtttacgatgattgattttgctattcaaaaagg 121  Q
    |||||||||| ||||||| ||||||| ||||||||||||||||  || ||||||||    
T  4611156 tctcctaggtccatgaatattgtgttcacgatgattgattttgtcatccaaaaagg 4611101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 17 - 107
Target Start/End: Original strand, 4862079 - 4862170
Alignment:
Q  17 ttgtggaccttttaca-agagttcaaagggtcatgcatagaaatgtaatttctcctaggttcatgaatgttgtgtttacgatgattgatttt 107  Q
    |||| |||||| |||| ||||||||||||||||||||||  ||||| |  || | ||| | ||||||||||||| |||||| ||||||||||    
T  4862079 ttgttgaccttctacatagagttcaaagggtcatgcataacaatgtcacgtcccttagatccatgaatgttgtgattacgaggattgatttt 4862170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 11 - 93
Target Start/End: Original strand, 20259881 - 20259964
Alignment:
Q  11 cagagattgtggaccttttaca-agagttcaaagggtcatgcatagaaatgtaatttctcctaggttcatgaatgttgtgttta 93  Q
    ||||| |||| |||||| |||| |||||||||| |||||||||||| ||||| || |||| || ||| || |||||||||||||    
T  20259881 cagaggttgttgaccttctacatagagttcaaaaggtcatgcatagtaatgtcatgtctcataagttaataaatgttgtgttta 20259964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 67 - 122
Target Start/End: Complemental strand, 30688523 - 30688468
Alignment:
Q  67 ctcctaggttcatgaatgttgtgtttacgatgattgattttgctattcaaaaaggc 122  Q
    ||||| ||| |||||||||||||||||||| ||||| ||||| ||| |||||||||    
T  30688523 ctcctgggtccatgaatgttgtgtttacgaggattggttttgttatccaaaaaggc 30688468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 33 - 96
Target Start/End: Complemental strand, 38731609 - 38731546
Alignment:
Q  33 agagttcaaagggtcatgcatagaaatgtaatttctcctaggttcatgaatgttgtgtttacga 96  Q
    |||||||||||||||||||| |  ||||| ||  ||||||||| ||||||| ||||||||||||    
T  38731609 agagttcaaagggtcatgcacaataatgtcatgactcctaggtccatgaatattgtgtttacga 38731546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 78 - 120
Target Start/End: Original strand, 45835338 - 45835380
Alignment:
Q  78 atgaatgttgtgtttacgatgattgattttgctattcaaaaag 120  Q
    ||||||||||||||||||| |||||||||||| || |||||||    
T  45835338 atgaatgttgtgtttacgaggattgattttgccatccaaaaag 45835380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 48 - 121
Target Start/End: Complemental strand, 47459667 - 47459594
Alignment:
Q  48 atgcatagaaatgtaatttctcctaggttcatgaatgttgtgtttacgatgattgattttgctattcaaaaagg 121  Q
    |||||||| ||||| || ||||||| ||  || ||||||||||||||||  |||||||| || |||||||||||    
T  47459667 atgcatagcaatgttatgtctcctaagtctataaatgttgtgtttacgagaattgatttagccattcaaaaagg 47459594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 33 - 121
Target Start/End: Original strand, 28041234 - 28041322
Alignment:
Q  33 agagttcaaagggtcatgcatagaaatgtaatttctcctaggttcatgaatgttgtgtttacgatgattgattttgctattcaaaaagg 121  Q
    |||||||||| |||||||||||| ||||| || ||  ||| || ||||||||||||| | | || |||||||||| | || ||||||||    
T  28041234 agagttcaaaaggtcatgcatagcaatgtcatgtcctctaagtccatgaatgttgtgctcatgaggattgatttttccatccaaaaagg 28041322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 51; Significance: 5e-20; HSPs: 15)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 29 - 135
Target Start/End: Original strand, 15292128 - 15292234
Alignment:
Q  29 tacaagagttcaaagggtcatgcatagaaatgtaatttctcctaggttcatgaatgttgtgtttacgatgattgattttgctattcaaaaaggcttcgcg 128  Q
    ||||| |||||||| |||||||||||| ||||| |  |||||||||| ||||||||||||||||| || |||||||||||| || |||||| |||| |||    
T  15292128 tacaaaagttcaaaaggtcatgcatagcaatgtcacatctcctaggtccatgaatgttgtgtttatgaggattgattttgccatccaaaaaagcttggcg 15292227  T
Q  129 gctcagt 135  Q
    || ||||    
T  15292228 gcgcagt 15292234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 33 - 121
Target Start/End: Original strand, 2566202 - 2566290
Alignment:
Q  33 agagttcaaagggtcatgcatagaaatgtaatttctcctaggttcatgaatgttgtgtttacgatgattgattttgctattcaaaaagg 121  Q
    |||||||||| |||||||||||| ||||| || |||||||| | ||| |||||||||||||||| |||||||||||| || ||||||||    
T  2566202 agagttcaaaaggtcatgcatagcaatgtcatgtctcctagatccatcaatgttgtgtttacgaggattgattttgccatccaaaaagg 2566290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 35 - 119
Target Start/End: Original strand, 32269906 - 32269990
Alignment:
Q  35 agttcaaagggtcatgcatagaaatgtaatttctcctaggttcatgaatgttgtgtttacgatgattgattttgctattcaaaaa 119  Q
    |||||||| |||||||||||| ||||| || |||||||||| |||||||||||||||||||| ||||||||| || || ||||||    
T  32269906 agttcaaaaggtcatgcatagcaatgtcatgtctcctaggtccatgaatgttgtgtttacgaggattgatttcgccatccaaaaa 32269990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 39 - 121
Target Start/End: Complemental strand, 430596 - 430514
Alignment:
Q  39 caaagggtcatgcatagaaatgtaatttctcctaggttcatgaatgttgtgtttacgatgattgattttgctattcaaaaagg 121  Q
    |||||||| |||||||| ||||| || |||||||||| |||||||||||||||||||| |||||||| ||| || ||||||||    
T  430596 caaagggttatgcatagtaatgttatgtctcctaggtccatgaatgttgtgtttacgaggattgattatgccatccaaaaagg 430514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 11 - 120
Target Start/End: Original strand, 13166994 - 13167104
Alignment:
Q  11 cagagattgtggaccttttaca-agagttcaaagggtcatgcatagaaatgtaatttctcctaggttcatgaatgttgtgtttacgatgattgattttgc 109  Q
    |||||| ||| |||||| |||| ||||| |||||||| |||||||| ||||  || |||||||||| ||||||||||| ||||||||||||||||| ||     
T  13166994 cagagactgttgaccttctacatagagtccaaagggttatgcatagcaatggtatgtctcctaggtccatgaatgttgggtttacgatgattgattctgt 13167093  T
Q  110 tattcaaaaag 120  Q
    ||| |||||||    
T  13167094 tatccaaaaag 13167104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 37 - 122
Target Start/End: Complemental strand, 23023591 - 23023506
Alignment:
Q  37 ttcaaagggtcatgcatagaaatgtaatttctcctaggttcatgaatgttgtgtttacgatgattgattttgctattcaaaaaggc 122  Q
    |||||| |||||||||||  ||||| || ||||||||||  ||||||||||||||||||| |||||||||||  || |||||||||    
T  23023591 ttcaaaaggtcatgcatatcaatgtcatgtctcctaggtcgatgaatgttgtgtttacgaagattgattttgtcatccaaaaaggc 23023506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 11 - 122
Target Start/End: Original strand, 37873722 - 37873834
Alignment:
Q  11 cagagattgtggaccttttaca-agagttcaaagggtcatgcatagaaatgtaatttctcctaggttcatgaatgttgtgtttacgatgattgattttgc 109  Q
    ||||| |||| |||||| |||| |||||||||||||||||||| |  ||||| ||  || ||||||  |||||||||||||||| || ||||||||||||    
T  37873722 cagaggttgttgaccttctacatagagttcaaagggtcatgcagaacaatgtcatgacttctaggtctatgaatgttgtgtttaagaggattgattttgc 37873821  T
Q  110 tattcaaaaaggc 122  Q
    |||  ||||||||    
T  37873822 tatcaaaaaaggc 37873834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 33 - 96
Target Start/End: Original strand, 22188762 - 22188825
Alignment:
Q  33 agagttcaaagggtcatgcatagaaatgtaatttctcctaggttcatgaatgttgtgtttacga 96  Q
    |||||||||| |||||||||||  ||| | || |||||||| ||||||||||||||||||||||    
T  22188762 agagttcaaaaggtcatgcataacaatatcatgtctcctagattcatgaatgttgtgtttacga 22188825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 32 - 109
Target Start/End: Complemental strand, 16017174 - 16017097
Alignment:
Q  32 aagagttcaaagggtcatgcatagaaatgtaatttctcctaggttcatgaatgttgtgtttacgatgattgattttgc 109  Q
    ||||||||||| |||||||||||| |||||  | ||||||||||| |||  ||| || |||| |||||||||||||||    
T  16017174 aagagttcaaaaggtcatgcatagcaatgttgtgtctcctaggtttatgggtgtggtttttaagatgattgattttgc 16017097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 33 - 101
Target Start/End: Complemental strand, 19260304 - 19260236
Alignment:
Q  33 agagttcaaagggtcatgcatagaaatgtaatttctcctaggttcatgaatgttgtgtttacgatgatt 101  Q
    ||||||||||||||||| ||||  |||||||| |||  ||  |||||||||||| ||||||||||||||    
T  19260304 agagttcaaagggtcatacataacaatgtaatgtcttatatattcatgaatgttatgtttacgatgatt 19260236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 33 - 109
Target Start/End: Complemental strand, 35310448 - 35310372
Alignment:
Q  33 agagttcaaagggtcatgcatagaaatgtaatttctcctaggttcatgaatgttgtgtttacgatgattgattttgc 109  Q
    ||||| ||||||||  ||||||  ||||| || |||||||||| ||||||||||||||||||||  |||| ||||||    
T  35310448 agagtccaaagggttttgcatatcaatgttatgtctcctaggtccatgaatgttgtgtttacgagaattggttttgc 35310372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 78 - 112
Target Start/End: Complemental strand, 43350015 - 43349981
Alignment:
Q  78 atgaatgttgtgtttacgatgattgattttgctat 112  Q
    ||||||||||||||||| |||||||||||||||||    
T  43350015 atgaatgttgtgtttacaatgattgattttgctat 43349981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 44 - 109
Target Start/End: Complemental strand, 15810038 - 15809973
Alignment:
Q  44 ggtcatgcatagaaatgtaatttctcctaggttcatgaatgttgtgtttacgatgattgattttgc 109  Q
    ||||||| |||| ||||| || |||||||||  ||||||||| ||||| |||| ||||||||||||    
T  15810038 ggtcatgtatagcaatgtcatgtctcctaggcccatgaatgtcgtgttcacgaggattgattttgc 15809973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 33 - 102
Target Start/End: Original strand, 25663139 - 25663208
Alignment:
Q  33 agagttcaaagggtcatgcatagaaatgtaatttctcctaggttcatgaatgttgtgtttacgatgattg 102  Q
    ||||| |||||||| |||||||  ||||| || || ||||||| ||||||||||| |||||||| |||||    
T  25663139 agagtccaaagggttatgcatatcaatgttatgtcccctaggtccatgaatgttgagtttacgaggattg 25663208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 33 - 102
Target Start/End: Complemental strand, 38875638 - 38875570
Alignment:
Q  33 agagttcaaagggtcatgcatagaaatgtaatttctcctaggttcatgaatgttgtgtttacgatgattg 102  Q
    |||||||||| |||||||||||  |||||  | ||||||||||  |||| ||||||||||||||||||||    
T  38875638 agagttcaaaaggtcatgcataacaatgtcttgtctcctaggtcaatga-tgttgtgtttacgatgattg 38875570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 49; Significance: 7e-19; HSPs: 14)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 33 - 121
Target Start/End: Complemental strand, 17344638 - 17344550
Alignment:
Q  33 agagttcaaagggtcatgcatagaaatgtaatttctcctaggttcatgaatgttgtgtttacgatgattgattttgctattcaaaaagg 121  Q
    |||||||||| |||||||||||  ||||| || |||||||||| |||||||||||||||||||| |||||||||| | || ||||||||    
T  17344638 agagttcaaaaggtcatgcataacaatgtcatgtctcctaggtccatgaatgttgtgtttacgaggattgatttttcgatccaaaaagg 17344550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 11 - 121
Target Start/End: Original strand, 4413150 - 4413261
Alignment:
Q  11 cagagattgtggaccttttaca-agagttcaaagggtcatgcatagaaatgtaatttctcctaggttcatgaatgttgtgtttacgatgattgattttgc 109  Q
    |||||||||| |||||| |||| || ||||||| |||||||||||| || || || |||||||||| ||||||||||||||| | || ||||||||||||    
T  4413150 cagagattgttgaccttctacatagggttcaaaaggtcatgcatagcaaagtcatgtctcctaggtccatgaatgttgtgttcatgaggattgattttgc 4413249  T
Q  110 tattcaaaaagg 121  Q
     || ||||||||    
T  4413250 catccaaaaagg 4413261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 9 - 122
Target Start/End: Complemental strand, 13413376 - 13413262
Alignment:
Q  9 agcagagattgtggaccttttaca-agagttcaaagggtcatgcatagaaatgtaatttctcctaggttcatgaatgttgtgtttacgatgattgatttt 107  Q
    |||||||  ||| |||||| |||| |||||||||| |||||||||||  ||||| || |||||||||| ||||||||||||||||| ||  |||| ||||    
T  13413376 agcagaggctgttgaccttctacatagagttcaaaaggtcatgcataacaatgtcatgtctcctaggtccatgaatgttgtgtttatgagaattggtttt 13413277  T
Q  108 gctattcaaaaaggc 122  Q
    || || |||||||||    
T  13413276 gccatccaaaaaggc 13413262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 71 - 112
Target Start/End: Original strand, 26407839 - 26407880
Alignment:
Q  71 taggttcatgaatgttgtgtttacgatgattgattttgctat 112  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  26407839 taggttcatgaatgttgtgtttacgatgattgattttgctat 26407880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 33 - 121
Target Start/End: Original strand, 9685522 - 9685610
Alignment:
Q  33 agagttcaaagggtcatgcatagaaatgtaatttctcctaggttcatgaatgttgtgtttacgatgattgattttgctattcaaaaagg 121  Q
    |||||||||| ||||||| |||| ||||| || |||||||||| ||||||||||||||| || | ||||| |||||| || ||||||||    
T  9685522 agagttcaaaaggtcatggatagcaatgtcatgtctcctaggtccatgaatgttgtgttcacaaagattgtttttgccatccaaaaagg 9685610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 33 - 109
Target Start/End: Original strand, 41868015 - 41868091
Alignment:
Q  33 agagttcaaagggtcatgcatagaaatgtaatttctcctaggttcatgaatgttgtgtttacgatgattgattttgc 109  Q
    |||||||||| |||||||||||  ||||| || ||||| |||| |||||||||||||||||||| ||||| ||||||    
T  41868015 agagttcaaaaggtcatgcataacaatgtcatgtctcccaggtccatgaatgttgtgtttacgaggattggttttgc 41868091  T

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Target: chr2; HSP #7
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 39 - 121
Target Start/End: Complemental strand, 27502356 - 27502274
Alignment:
Q  39 caaagggtcatgcatagaaatgtaatttctcctaggttcatgaatgttgtgtttacgatgattgattttgctattcaaaaagg 121  Q
    |||||||| |||||||| ||| | || |||||||| |  ||||||||||||||||||| |||||||||||| || ||||||||    
T  27502356 caaagggttatgcatagcaatatcatgtctcctagatctatgaatgttgtgtttacgaagattgattttgcaatccaaaaagg 27502274  T

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Target: chr2; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 11 - 130
Target Start/End: Original strand, 7760929 - 7761049
Alignment:
Q  11 cagagattgtggaccttttaca-agagttcaaagggtcatgcatagaaatgtaatttctcctaggttcatgaatgttgtgtttacgatgattgattttgc 109  Q
    ||||| |||| |||||| |||| |||||||||||| |||||| ||| ||||| || |||| || ||||| ||||| |||| ||||||  ||||||||||     
T  7760929 cagaggttgttgaccttctacatagagttcaaaggatcatgcgtagcaatgtgatgtctcataagttcaagaatgatgtgcttacgaaaattgattttga 7761028  T
Q  110 tattcaaaaaggcttcgcggc 130  Q
     || ||||||||||| |||||    
T  7761029 catccaaaaaggcttagcggc 7761049  T

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Target: chr2; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 11 - 109
Target Start/End: Original strand, 16351928 - 16352027
Alignment:
Q  11 cagagattgtggaccttttaca-agagttcaaagggtcatgcatagaaatgtaatttctcctaggttcatgaatgttgtgtttacgatgattgattttgc 109  Q
    ||||| |||| |||||| |||| |||||||||| ||||||||| |  ||||| || |||| ||||| ||||||| || ||||||||||||||| ||||||    
T  16351928 cagaggttgttgaccttctacatagagttcaaatggtcatgcacaacaatgtcatgtctcttaggtacatgaatattatgtttacgatgattgtttttgc 16352027  T

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Target: chr2; HSP #10
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 11 - 101
Target Start/End: Complemental strand, 44686439 - 44686348
Alignment:
Q  11 cagagattgtggaccttttaca-agagttcaaagggtcatgcatagaaatgtaatttctcctaggttcatgaatgttgtgtttacgatgatt 101  Q
    ||||| |||| |||||| |||| ||| | |||||||| |||||||| ||||| || |||||||||| | |||||||||||||||||| ||||    
T  44686439 cagagtttgttgaccttctacatagattccaaagggttatgcatagcaatgttatgtctcctaggtccgtgaatgttgtgtttacgaggatt 44686348  T

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Target: chr2; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 23 - 108
Target Start/End: Original strand, 19161879 - 19161965
Alignment:
Q  23 accttttaca-agagttcaaagggtcatgcatagaaatgtaatttctcctaggttcatgaatgttgtgtttacgatgattgattttg 108  Q
    |||||||||| |||||||||| |||||||||||  ||||| || ||||||||||  ||||||  ||||||| ||| |||||||||||    
T  19161879 accttttacatagagttcaaaaggtcatgcatatcaatgtcatgtctcctaggtcaatgaatagtgtgttttcgaggattgattttg 19161965  T

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Target: chr2; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 33 - 121
Target Start/End: Original strand, 18745061 - 18745149
Alignment:
Q  33 agagttcaaagggtcatgcatagaaatgtaatttctcctaggttcatgaatgttgtgtttacgatgattgattttgctattcaaaaagg 121  Q
    |||||||||| | |||||||||| ||||| || | ||||||||  ||||||||||||||||  | ||||| |||||| || ||||||||    
T  18745061 agagttcaaaagatcatgcatagcaatgtcatatttcctaggtctatgaatgttgtgtttataaggattggttttgccatccaaaaagg 18745149  T

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Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 34 - 130
Target Start/End: Complemental strand, 3825725 - 3825629
Alignment:
Q  34 gagttcaaagggtcatgcatagaaatgtaatttctcctaggttcatgaatgttgtgtttacgatgattgattttgctattcaaaaaggcttcgcggc 130  Q
    ||||||||||  |||||||||| ||||| || ||| |||||  ||| ||||||||||||| || ||| |||||||  || ||||||| ||| |||||    
T  3825725 gagttcaaagaatcatgcatagcaatgtcatgtcttctaggaccataaatgttgtgtttatgaagatcgattttgtcatccaaaaagactttgcggc 3825629  T

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Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 11 - 119
Target Start/End: Original strand, 8036566 - 8036677
Alignment:
Q  11 cagagattgtggaccttttaca-agagttcaaagggtcatgcataga--aatgtaatttctcctaggttcatgaatgttgtgtttacgatgattgatttt 107  Q
    ||||| |||| ||||||||||| |||||||||||| | ||||||| |  ||||| || |||||||||| | |  || |||| ||||| ||||||||||||    
T  8036566 cagaggttgttgaccttttacatagagttcaaaggtttatgcatatatcaatgtcatgtctcctaggtccgtagatattgtctttacaatgattgatttt 8036665  T
Q  108 gctattcaaaaa 119  Q
    |  |||||||||    
T  8036666 gtcattcaaaaa 8036677  T

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Target: scaffold0148 (Bit Score: 48; Significance: 3e-18; HSPs: 1)
Name: scaffold0148
Description:

Target: scaffold0148; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 11 - 129
Target Start/End: Complemental strand, 33273 - 33154
Alignment:
Q  11 cagagattgtggaccttttaca-agagttcaaagggtcatgcatagaaatgtaatttctcctaggttcatgaatgttgtgtttacgatgattgattttgc 109  Q
    ||||| |||| |||||| |||| |||||||||| |||||||||||| ||| | || |||||||||| |||||| || |||||||||| |||||||||||     
T  33273 cagaggttgttgaccttctacatagagttcaaaaggtcatgcatagcaattttatgtctcctaggtccatgaacgtcgtgtttacgaggattgattttgt 33174  T
Q  110 tattcaaaaaggcttcgcgg 129  Q
     || ||||||||||| ||||    
T  33173 catccaaaaaggcttggcgg 33154  T

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Target: scaffold0009 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 38 - 121
Target Start/End: Complemental strand, 103101 - 103018
Alignment:
Q  38 tcaaagggtcatgcatagaaatgtaatttctcctaggttcatgaatgttgtgtttacgatgattgattttgctattcaaaaagg 121  Q
    ||||| |||||||||||  |||||  | |||||||||| |||||||||||||||||||| ||||| |||||| || ||||||||    
T  103101 tcaaaaggtcatgcataacaatgtcgtgtctcctaggtccatgaatgttgtgtttacgaggattggttttgccatccaaaaagg 103018  T

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Target: scaffold0490 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: scaffold0490
Description:

Target: scaffold0490; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 33 - 88
Target Start/End: Complemental strand, 6334 - 6279
Alignment:
Q  33 agagttcaaagggtcatgcatagaaatgtaatttctcctaggttcatgaatgttgt 88  Q
    |||||||||| |||||||||||| ||||| || |||||||||| ||||||||||||    
T  6334 agagttcaaaaggtcatgcatagcaatgtcatgtctcctaggtccatgaatgttgt 6279  T

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Target: scaffold0361 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: scaffold0361
Description:

Target: scaffold0361; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 37 - 117
Target Start/End: Original strand, 17390 - 17468
Alignment:
Q  37 ttcaaagggtcatgcatagaaatgtaatttctcctaggttcatgaatgttgtgtttacgatgattgattttgctattcaaa 117  Q
    |||||| |||||||||||  |||||  | |||| ||||| ||||||||||||||||| |||||||| ||||||||| ||||    
T  17390 ttcaaatggtcatgcataataatgt--tgtctcttaggtccatgaatgttgtgtttaagatgattgcttttgctatccaaa 17468  T

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Target: scaffold1768 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold1768
Description:

Target: scaffold1768; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 35 - 124
Target Start/End: Original strand, 293 - 382
Alignment:
Q  35 agttcaaagggtcatgcatagaaatgtaatttctcctaggttcatgaatgttgtgtttacgatgattgattttgctattcaaaaaggctt 124  Q
    ||||||||  ||||| ||||| ||||| || |||||||| |  ||||| ||||||||||||| ||||  |||||| || |||||||||||    
T  293 agttcaaaaagtcatacatagcaatgtcatgtctcctagatcgatgaacgttgtgtttacgaggattagttttgccatccaaaaaggctt 382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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