View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20578_high_26 (Length: 392)

Name: NF20578_high_26
Description: NF20578
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20578_high_26
NF20578_high_26
[»] chr2 (7 HSPs)
chr2 (1-376)||(32063663-32064034)
chr2 (153-376)||(32030668-32030899)
chr2 (14-89)||(40373518-40373593)
chr2 (15-84)||(6247727-6247796)
chr2 (13-84)||(44195038-44195108)
chr2 (13-70)||(18248748-18248805)
chr2 (15-71)||(15524257-15524313)
[»] chr7 (4 HSPs)
chr7 (15-90)||(4088933-4089008)
chr7 (19-89)||(44057680-44057750)
chr7 (15-68)||(32097238-32097291)
chr7 (15-84)||(5078960-5079029)
[»] chr6 (1 HSPs)
chr6 (13-92)||(5008439-5008518)
[»] chr5 (3 HSPs)
chr5 (15-84)||(10437480-10437549)
chr5 (13-89)||(39691041-39691117)
chr5 (15-84)||(32535338-32535407)
[»] chr8 (7 HSPs)
chr8 (8-84)||(7421522-7421598)
chr8 (15-84)||(37109454-37109523)
chr8 (15-71)||(41178316-41178372)
chr8 (13-68)||(26432162-26432215)
chr8 (8-84)||(36642851-36642927)
chr8 (19-84)||(2271054-2271119)
chr8 (15-84)||(25264081-25264150)
[»] chr4 (3 HSPs)
chr4 (15-89)||(39009432-39009506)
chr4 (15-79)||(1019170-1019234)
chr4 (15-84)||(42541675-42541746)
[»] chr3 (3 HSPs)
chr3 (15-89)||(54918113-54918187)
chr3 (15-84)||(26187353-26187422)
chr3 (15-84)||(12931375-12931444)
[»] scaffold0123 (1 HSPs)
scaffold0123 (37-84)||(28245-28292)
[»] chr1 (1 HSPs)
chr1 (22-84)||(6596540-6596602)


Alignment Details
Target: chr2 (Bit Score: 303; Significance: 1e-170; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 1 - 376
Target Start/End: Original strand, 32063663 - 32064034
Alignment:
1 ttttagatataattaattaattagagggaacaattggaagtaaaataataattcaatattgaaaagtgcaaatgacattcatttcgaaataannnnnnnn 100  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||            
32063663 ttttagatataattaattaattagagggaacaattgaaagtaaaataataattcaatattgaaaagtgtaaatgacattcatttcgaaataatttttttt 32063762  T
101 atttaaaacgagacttattttaaaatgaatgaagtattaaactcatgctatatatcgagacttagatccaaatccattaatttctacattgtacttgagt 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    |||||| ||||||||||||||||||||||||||||||||||||||    
32063763 atttaaaacgagacttattttaaaatgaatgaagtattaaactcatgctat----cgagacctagatccaaatccattaatttctacattgtacttgagt 32063858  T
201 ggacacctttgaccaaaagatgcctcaaagtaccttctaacttctcacattaaatactataaatagaagatacctaacatatagcaagacacatccatca 300  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||    
32063859 ggacacctttgaacaaaagatgcctcaaagtaccttctaacttctcacattaaatattataaatagaagatacctaacatatagcaaaacacatccatca 32063958  T
301 atcaacaattcacacaacaatgtctatttttcttaaccccaaaacctcatttctcactttattgttcttttcattt 376  Q
     ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
32063959 ctcaacaattcacacaacaatgtctatttttcttaaccccaatacctcatttctcactttattgttcttttcattt 32064034  T

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Target: chr2; HSP #2
Raw Score: 150; E-Value: 3e-79
Query Start/End: Original strand, 153 - 376
Target Start/End: Original strand, 32030668 - 32030899
Alignment:
153 tatcgagacttagatccaaatccattaatttctacatt-gtacttgagt-ggacacctttgaccaaaagatgcctcaaagtacctt------ctaac-tt 243  Q
    |||| |||| |||||||||||||||||||||||| | | |||||||||| ||||| |||||||||||||||||||||| |||||||      ||||| ||    
32030668 tatctagacctagatccaaatccattaatttctataatagtacttgagttggacaactttgaccaaaagatgcctcaa-gtacctttctaacctaacctt 32030766  T
244 ctcacattaaatactataaatagaagatacctaacatatagcaagacacatccatcaatcaacaattcacacaacaatgtctatttttcttaaccccaaa 343  Q
    |||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
32030767 ctcacattgaatactataaatagaagatacctaacatatagcaaaacacatccatcaatcaacaattcacacaacaatgtctatttttcttaaccccaaa 32030866  T
344 acctcatttctcactttattgttcttttcattt 376  Q
    |||||||||||||||||||||||||||||||||    
32030867 acctcatttctcactttattgttcttttcattt 32030899  T

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Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 14 - 89
Target Start/End: Complemental strand, 40373593 - 40373518
Alignment:
14 taattaattagagggaacaattggaagtaaaataataattcaatattgaaaagtgcaaatgacattcatttcgaaa 89  Q
    ||||||||||||| | |||||| |||||||||||||||||  | |||||||||||||| ||| ||| |||| ||||    
40373593 taattaattagagagtacaattagaagtaaaataataattttacattgaaaagtgcaagtgatatttattttgaaa 40373518  T

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Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 15 - 84
Target Start/End: Complemental strand, 6247796 - 6247727
Alignment:
15 aattaattagagggaacaattggaagtaaaataataattcaatattgaaaagtgcaaatgacattcattt 84  Q
    |||||||||||||| ||| ||||||||||||| ||| ||| | ||||||||| |||  ||||||||||||    
6247796 aattaattagagggtacagttggaagtaaaatcatatttctacattgaaaagcgcaggtgacattcattt 6247727  T

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Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 13 - 84
Target Start/End: Original strand, 44195038 - 44195108
Alignment:
13 ttaattaattagagggaacaattggaagtaaaataataattcaatattgaaaagtgcaaatgacattcattt 84  Q
    ||||||||||||||| | ||| || ||||||||||||||||| | ||||||||||  |||||||||| ||||    
44195038 ttaattaattagaggta-caactgaaagtaaaataataattctacattgaaaagtttaaatgacatttattt 44195108  T

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Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 13 - 70
Target Start/End: Complemental strand, 18248805 - 18248748
Alignment:
13 ttaattaattagagggaacaattggaagtaaaataataattcaatattgaaaagtgca 70  Q
    |||||||||||||||| |||| || || |||||||||||||  | |||||||||||||    
18248805 ttaattaattagagggtacaactgaaaataaaataataattttacattgaaaagtgca 18248748  T

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Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 15 - 71
Target Start/End: Complemental strand, 15524313 - 15524257
Alignment:
15 aattaattagagggaacaattggaagtaaaataataattcaatattgaaaagtgcaa 71  Q
    ||||||||| |||| ||||||| || ||||||||||||||   ||||||||||||||    
15524313 aattaattaaagggtacaattgaaaataaaataataattctgcattgaaaagtgcaa 15524257  T

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Target: chr7 (Bit Score: 48; Significance: 2e-18; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 15 - 90
Target Start/End: Original strand, 4088933 - 4089008
Alignment:
15 aattaattagagggaacaattggaagtaaaataataattcaatattgaaaagtgcaaatgacattcatttcgaaat 90  Q
    |||||||||||||  ||||||||||||||||||||||||| | |||||||||||||| | |||||||||| |||||    
4088933 aattaattagaggatacaattggaagtaaaataataattctacattgaaaagtgcaactaacattcattttgaaat 4089008  T

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Target: chr7; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 19 - 89
Target Start/End: Original strand, 44057680 - 44057750
Alignment:
19 aattagagggaacaattggaagtaaaataataattcaatattgaaaagtgcaaatgacattcatttcgaaa 89  Q
    ||||| |||| ||||||||||||||||||||||||| | |||||||||||||| |||||||||||| ||||    
44057680 aattaaagggtacaattggaagtaaaataataattctacattgaaaagtgcaagtgacattcattttgaaa 44057750  T

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Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 15 - 68
Target Start/End: Original strand, 32097238 - 32097291
Alignment:
15 aattaattagagggaacaattggaagtaaaataataattcaatattgaaaagtg 68  Q
    |||||||||||||| | ||||||||||||||||||||||| | |||||||||||    
32097238 aattaattagagggtataattggaagtaaaataataattctacattgaaaagtg 32097291  T

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Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 15 - 84
Target Start/End: Original strand, 5078960 - 5079029
Alignment:
15 aattaattagagggaacaattggaagtaaaataataattcaatattgaaaagtgcaaatgacattcattt 84  Q
    |||||||||||  | |||||||||| | |||||||||||| | ||||||||||| |||| | ||||||||    
5078960 aattaattagactgtacaattggaaatcaaataataattctacattgaaaagtgtaaataatattcattt 5079029  T

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Target: chr6 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 13 - 92
Target Start/End: Original strand, 5008439 - 5008518
Alignment:
13 ttaattaattagagggaacaattggaagtaaaataataattcaatattgaaaagtgcaaatgacattcatttcgaaataa 92  Q
    ||||||||||||| || ||||||| ||||||||||||||||| | |||||||||||||| ||||||| |||| |||||||    
5008439 ttaattaattagatggtacaattgaaagtaaaataataattctacattgaaaagtgcaagtgacattaattttgaaataa 5008518  T

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Target: chr5 (Bit Score: 46; Significance: 4e-17; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 15 - 84
Target Start/End: Original strand, 10437480 - 10437549
Alignment:
15 aattaattagagggaacaattggaagtaaaataataattcaatattgaaaagtgcaaatgacattcattt 84  Q
    |||||||||||||  ||||||||||||||||||||||||| | |||||||||| ||| ||||||||||||    
10437480 aattaattagaggatacaattggaagtaaaataataattctacattgaaaagtacaagtgacattcattt 10437549  T

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Target: chr5; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 13 - 89
Target Start/End: Complemental strand, 39691117 - 39691041
Alignment:
13 ttaattaattagagggaacaattggaagtaaaataataattcaatattgaaaagtgcaaatgacattcatttcgaaa 89  Q
    ||||||||||||| || ||||||| ||||||||||||||||| | |||||||| | ||| |||||||||||||||||    
39691117 ttaattaattagaaggtacaattgaaagtaaaataataattctacattgaaaacttcaagtgacattcatttcgaaa 39691041  T

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Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 15 - 84
Target Start/End: Original strand, 32535338 - 32535407
Alignment:
15 aattaattagagggaacaattggaagtaaaataataattcaatattgaaaagtgcaaatgacattcattt 84  Q
    |||||| |||| || |||||||||| |||||||||||||  | ||||||||||| || ||||||||||||    
32535338 aattaactagaaggtacaattggaaataaaataataattttacattgaaaagtgtaagtgacattcattt 32535407  T

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Target: chr8 (Bit Score: 45; Significance: 2e-16; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 8 - 84
Target Start/End: Original strand, 7421522 - 7421598
Alignment:
8 tataattaattaattagagggaacaattggaagtaaaataataattcaatattgaaaagtgcaaatgacattcattt 84  Q
    |||| |||||||||||||| | ||||||||||||||||||||||||| | ||| ||||||| || ||||||||||||    
7421522 tatatttaattaattagagagtacaattggaagtaaaataataattctacattaaaaagtgtaactgacattcattt 7421598  T

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Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 15 - 84
Target Start/End: Original strand, 37109454 - 37109523
Alignment:
15 aattaattagagggaacaattggaagtaaaataataattcaatattgaaaagtgcaaatgacattcattt 84  Q
    ||||||||||| |  ||||||| ||||||||||||||||| | |||||||||| ||| ||||||||||||    
37109454 aattaattagatgatacaattgaaagtaaaataataattctacattgaaaagtacaagtgacattcattt 37109523  T

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Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 15 - 71
Target Start/End: Original strand, 41178316 - 41178372
Alignment:
15 aattaattagagggaacaattggaagtaaaataataattcaatattgaaaagtgcaa 71  Q
    ||||||||| |||| | ||||||||||||||||||||||| | ||||||||||||||    
41178316 aattaattatagggtaaaattggaagtaaaataataattctacattgaaaagtgcaa 41178372  T

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Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 13 - 68
Target Start/End: Complemental strand, 26432215 - 26432162
Alignment:
13 ttaattaattagagggaacaattggaagtaaaataataattcaatattgaaaagtg 68  Q
    ||||||||||||||   ||||||||||||||||||||||||  |||||||||||||    
26432215 ttaattaattagagt--acaattggaagtaaaataataattttatattgaaaagtg 26432162  T

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Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 8 - 84
Target Start/End: Complemental strand, 36642927 - 36642851
Alignment:
8 tataattaattaattagagggaacaattggaagtaaaataataattcaatattgaaaagtgcaaatgacattcattt 84  Q
    |||||| ||||||||||| |  ||||||| ||||||||||||||||  || |||||||||  |||||||||| ||||    
36642927 tataatcaattaattagatgatacaattgaaagtaaaataataattttatgttgaaaagtataaatgacatttattt 36642851  T

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Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 84
Target Start/End: Complemental strand, 2271119 - 2271054
Alignment:
19 aattagagggaacaattggaagtaaaataataattcaatattgaaaagtgcaaatgacattcattt 84  Q
    |||||||||| ||||||| || ||||||||||||||   ||| |||||||||| | ||||||||||    
2271119 aattagagggtacaattgaaaataaaataataattctgcattaaaaagtgcaagttacattcattt 2271054  T

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Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 15 - 84
Target Start/End: Original strand, 25264081 - 25264150
Alignment:
15 aattaattagagggaacaattggaagtaaaataataattcaatattgaaaagtgcaaatgacattcattt 84  Q
    ||||||||| |||| |||||||  ||||||||||| |||| | |||||||| || || ||||||||||||    
25264081 aattaattatagggtacaattgtcagtaaaataatgattctacattgaaaaatgtaagtgacattcattt 25264150  T

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Target: chr4 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 15 - 89
Target Start/End: Complemental strand, 39009506 - 39009432
Alignment:
15 aattaattagagggaacaattggaagtaaaataataattcaatattgaaaagtgcaaatgacattcatttcgaaa 89  Q
    ||||||||| |||| |||||||||  |||||||||||||| | |||||||||||||| |||||||||||| ||||    
39009506 aattaattaaagggtacaattggagataaaataataattctacattgaaaagtgcaagtgacattcattttgaaa 39009432  T

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Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 15 - 79
Target Start/End: Original strand, 1019170 - 1019234
Alignment:
15 aattaattagagggaacaattggaagtaaaataataattcaatattgaaaagtgcaaatgacatt 79  Q
    |||| |||||||||  |||||||||||| ||||||| ||| | ||||||||||||||||||||||    
1019170 aattgattagagggtgcaattggaagtataataatagttctacattgaaaagtgcaaatgacatt 1019234  T

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Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 15 - 84
Target Start/End: Complemental strand, 42541746 - 42541675
Alignment:
15 aattaattagagggaacaattggaagtaaaataataattcaa--tattgaaaagtgcaaatgacattcattt 84  Q
    |||||||||||||| | || || || |||||||||||||| |  ||||||||||||||| ||||||||||||    
42541746 aattaattagagggtaaaactgaaaataaaataataattctacatattgaaaagtgcaagtgacattcattt 42541675  T

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Target: chr3 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 15 - 89
Target Start/End: Complemental strand, 54918187 - 54918113
Alignment:
15 aattaattagagggaacaattggaagtaaaataataattcaatattgaaaagtgcaaatgacattcatttcgaaa 89  Q
    |||||||||||| | ||||||||||||||||||||||| | | |||||||||||||| |||| ||||||| ||||    
54918187 aattaattagagcgtacaattggaagtaaaataataatcctacattgaaaagtgcaagtgactttcattttgaaa 54918113  T

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Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 15 - 84
Target Start/End: Original strand, 26187353 - 26187422
Alignment:
15 aattaattagagggaacaattggaagtaaaataataattcaatattgaaaagtgcaaatgacattcattt 84  Q
    |||||||||||| | ||||||| ||||||||||||||||| ||||||||||||  || ||||||||||||    
26187353 aattaattagagagtacaattgtaagtaaaataataattctatattgaaaagtataagtgacattcattt 26187422  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 15 - 84
Target Start/End: Original strand, 12931375 - 12931444
Alignment:
15 aattaattagagggaacaattggaagtaaaataataattcaatattgaaaagtgcaaatgacattcattt 84  Q
    ||||||||| |||| | ||||| ||||||||||||||||  |  || |||||||||| ||||||||||||    
12931375 aattaattatagggtaaaattgtaagtaaaataataattatacgttaaaaagtgcaagtgacattcattt 12931444  T

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Target: scaffold0123 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: scaffold0123
Description:

Target: scaffold0123; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 37 - 84
Target Start/End: Original strand, 28245 - 28292
Alignment:
37 gaagtaaaataataattcaatattgaaaagtgcaaatgacattcattt 84  Q
    |||||||||||||||||  | |||||||||||||| ||||||||||||    
28245 gaagtaaaataataattatacattgaaaagtgcaagtgacattcattt 28292  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 22 - 84
Target Start/End: Complemental strand, 6596602 - 6596540
Alignment:
22 tagagggaacaattggaagtaaaataataattcaatattgaaaagtgcaaatgacattcattt 84  Q
    ||||||| | ||||||||||||||||||||||| | ||| || ||||||| ||||||| ||||    
6596602 tagagggtataattggaagtaaaataataattctacattaaacagtgcaagtgacatttattt 6596540  T

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