View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20578_high_29 (Length: 368)
Name: NF20578_high_29
Description: NF20578
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20578_high_29 |
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Alignment Details
Target: chr1 (Bit Score: 200; Significance: 1e-109; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 124 - 358
Target Start/End: Complemental strand, 4410050 - 4409815
Alignment:
| Q |
124 |
gatttttgactacttacttatttgataacaagaacaattttaagataaggctacagttnnnnnnnn-tgtttgtaagcaaaaacaaatgaaccaaccttg |
222 |
Q |
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| T |
4410050 |
gatttttgactacttacttatttgataacaagaacaattttaagataaggctacagttaaaaaaaaatgtttgtaagcaaaaacaaatgaaccaaccttg |
4409951 |
T |
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| Q |
223 |
tcttaataagcataggaaccttaaataaatcaaacagagccaccatatgaaactttacatatatctgtcaaaatcttcaaaaattcaaacatttttgaca |
322 |
Q |
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| T |
4409950 |
tcttaataagcataggaaccttacataaatcaaacagagccaccatatgaaactttacatatatctgtcaaaatcttcaaaaattcaaacatttttgaca |
4409851 |
T |
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| Q |
323 |
acttctttgcaggatttgtagttgccttgtcctatg |
358 |
Q |
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| T |
4409850 |
acttctttgcaggatttgtagttgccttgtcctatg |
4409815 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 19 - 68
Target Start/End: Complemental strand, 4410155 - 4410106
Alignment:
| Q |
19 |
gtgtgatatcttccatgttcatttgagcagtgtacacatcattctccatt |
68 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4410155 |
gtgtgatatcttccatgttcatttgagcagtgtacacatcattctccatt |
4410106 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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