View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20578_high_33 (Length: 360)
Name: NF20578_high_33
Description: NF20578
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20578_high_33 |
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Alignment Details
Target: chr1 (Bit Score: 176; Significance: 9e-95; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 176; E-Value: 9e-95
Query Start/End: Original strand, 1 - 188
Target Start/End: Original strand, 14596860 - 14597047
Alignment:
| Q |
1 |
cacctggtgtagtcgatcagtaagattaattggtgctgatccacgaaatgcatctcgcttggttacacaatatacagaacgccatccacgattgtgcatg |
100 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14596860 |
cacctggtgtagtcgatcagtaagattaattggtgcagatccacgaaatgcatctcgcttggttacacaatatacagaacgccatccacgattgtgcatg |
14596959 |
T |
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| Q |
101 |
cggtaccctgtaaccacgtcttctgtcactgacccataaatccatcccactctttctccccattctgtcttgtcttcatacctacatg |
188 |
Q |
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| T |
14596960 |
cggtaccctgtaaccacatcctctgtcactgacccataaatccatcccactctttctccccattctgtcttgtcttcatacctacatg |
14597047 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 1 - 188
Target Start/End: Complemental strand, 14611710 - 14611523
Alignment:
| Q |
1 |
cacctggtgtagtcgatcagtaagattaattggtgctgatccacgaaatgcatctcgcttggttacacaatatacagaacgccatccacgattgtgcatg |
100 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||| || ||||||||||||||||||||||| ||||||||| |
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| T |
14611710 |
cacctggtgtagtcgatcagtaaggttaattggtgctgatccgcgaaatgcatctcgcttggtcacgcaatatacagaacgccatccacggttgtgcatg |
14611611 |
T |
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| Q |
101 |
cggtaccctgtaaccacgtcttctgtcactgacccataaatccatcccactctttctccccattctgtcttgtcttcatacctacatg |
188 |
Q |
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| T |
14611610 |
cggtaacctgtaacgacgtcctctgtcactgatccataaatccatcccactctgtctccccattctgtcttctcttcgtacctacatg |
14611523 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 111; E-Value: 6e-56
Query Start/End: Original strand, 239 - 353
Target Start/End: Original strand, 14597098 - 14597212
Alignment:
| Q |
239 |
gttgtcttttcatatataatattgtatataagtacaaaaatattttttatgacttatatgtttgtgtttgacaaagtatacataccaacaagaaatgaca |
338 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14597098 |
gttgtcttttcatatataatattgtatataagtacaaaaatattttttatgacttatatgtttgtgtttgacaaagtatacataccaacaagaaatgaca |
14597197 |
T |
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| Q |
339 |
gacacaggttctgct |
353 |
Q |
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||||||| ||||||| |
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| T |
14597198 |
gacacagattctgct |
14597212 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 41 - 182
Target Start/End: Original strand, 12192718 - 12192859
Alignment:
| Q |
41 |
ccacgaaatgcatctcgcttggttacacaatatacagaacgccatccacgattgtgcatgcggtaccctgtaaccacgtcttctgtcactgacccataaa |
140 |
Q |
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||||| || ||||| | |||||| |||||||| ||||| | |||||| | ||||||||| | || ||||| || || || || || || ||||| |||| |
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| T |
12192718 |
ccacggaaggcatccctcttggtcacacaatacacagacctccatcctctattgtgcattctataacctgtcacaacatcctcggttaccgacccgtaaa |
12192817 |
T |
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| Q |
141 |
tccatcccactctttctccccattctgtcttgtcttcatacc |
182 |
Q |
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||||||| ||||| ||||||||||| ||||| |||||||||| |
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| T |
12192818 |
tccatccaactctatctccccattcggtcttatcttcatacc |
12192859 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 82 - 183
Target Start/End: Original strand, 15417158 - 15417259
Alignment:
| Q |
82 |
ccatccacgattgtgcatgcggtaccctgtaaccacgtcttctgtcactgacccataaatccatcccactctttctccccattctgtcttgtcttcatac |
181 |
Q |
| |
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||||||||| |||||||| | ||| || || || || |||||||||||||| ||||||||||| || | ||| |||||||||||||| || || |||||| |
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| T |
15417158 |
ccatccacggttgtgcattctgtaaccagttacaacatcttctgtcactgatccataaatccaacctattctatctccccattctgttttatcctcatac |
15417257 |
T |
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| Q |
182 |
ct |
183 |
Q |
| |
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|| |
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| T |
15417258 |
ct |
15417259 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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