View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20578_high_35 (Length: 345)

Name: NF20578_high_35
Description: NF20578
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20578_high_35
NF20578_high_35
[»] chr1 (1 HSPs)
chr1 (6-333)||(27388117-27388448)


Alignment Details
Target: chr1 (Bit Score: 299; Significance: 1e-168; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 6 - 333
Target Start/End: Complemental strand, 27388448 - 27388117
Alignment:
Q  6 attatctggtttcctttcctaattaagtcatgcgtcgcaaatgtttatggaaaaagatcttataacctttcttaatcaatgtcccctttctcataagtat 105  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  27388448 attatctggttccctttcctaattaagtcatgcgtcgcaaatgtttatggaaaaagatcttataacctttcttaatcaatgttccctttctcataagtat 27388349  T
Q  106 taagtaatatcaccatttcttcttttaaatttaaaaattcattttcaatctgtctcatctcaatttaattaaattcgttttgggttaaag----gataca 201  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||    ||||||    
T  27388348 taagtaatatcaccatttcttcttttaaatttaaaaaatcattttcaatctgtctcatctcaacttaattaaattcgttttgggttaaaggatcgataca 27388249  T
Q  202 tcacataatcaagttgaacaacatgtattaccgggggtgtctaattgacatgtttaaaatcagatcttactaatttaataaatcttctataacataacaa 301  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27388248 tcacataatcaagttgaacaacatgtattaccgggggtgtctaattgacatgtttaaaatcagatcttactaatttaataaatcttctataacataacaa 27388149  T
Q  302 gatataaagagatacatcattttgtgttggat 333  Q
    ||||||||||||||||||||||||||||||||    
T  27388148 gatataaagagatacatcattttgtgttggat 27388117  T

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