View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20578_high_39 (Length: 330)
Name: NF20578_high_39
Description: NF20578
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20578_high_39 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 256; Significance: 1e-142; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 10 - 330
Target Start/End: Complemental strand, 10421426 - 10421103
Alignment:
| Q |
10 |
ataatactaacaaagacggttaagggttcacaaaatatcaataatattacaatagcactgcataacatagatttccaagaactaatagcttaaactcaat |
109 |
Q |
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| T |
10421426 |
ataatactaacaaagacggttaagggttcataaaatatcaataatattacaatagcactgcataacatagatttcaaagaactaatagtttaaactcaat |
10421327 |
T |
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| Q |
110 |
attttattatctatc-aatcccacccaaattataagagaaagnnnnnnnctagtaa--agaaaaagatgaattacttgtcatctggatattcatatgtta |
206 |
Q |
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| T |
10421326 |
attttattatctaacaaatcccacccaaattataagagaaagaaaaaaactagtaaagagagaaagatgaattacttgtcatctggatatgcatatgtta |
10421227 |
T |
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| Q |
207 |
gagattacaacaatgtatagagtagtttagatggtgtaagttgagcctttacattaatgaggctgccacccacttaaactaactgatgatattcagaatg |
306 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10421226 |
gagattacaacaatgtatagagtagtttagatggtgtaagttgagcctttacattaatgaggctgccacccacttaaactaactgatgatattcagaata |
10421127 |
T |
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| Q |
307 |
taagcacagaccagtcttcaactc |
330 |
Q |
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|||||||||||||||||||||||| |
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| T |
10421126 |
taagcacagaccagtcttcaactc |
10421103 |
T |
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