View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20578_high_49 (Length: 283)
Name: NF20578_high_49
Description: NF20578
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20578_high_49 |
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Alignment Details
Target: chr6 (Bit Score: 238; Significance: 1e-132; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 19 - 263
Target Start/End: Complemental strand, 29007813 - 29007568
Alignment:
| Q |
19 |
cagagaaaaaactcaaaataagaggtgggaacaatgtaaagtgtatttttcgagacttgaa-ttaaaatttgtaataacgaacggttcattggatatgtg |
117 |
Q |
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| T |
29007813 |
cagagaaaaaactcaaaataagaggtgggaacaatgtaaagtgtatttttcgagacttgaaattaaaatttgtaataacgaacggttcattggatatgtg |
29007714 |
T |
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| Q |
118 |
atgattggcagtgtttacttacacaccgttatacgacgtgatcgaggtaaaccaacaaggctacaacacatgtacaatagcaaatgccatttccacacac |
217 |
Q |
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| T |
29007713 |
atgattggcagtgtttacttacacaccgttatacgacgtgatcgaggtaaaccaacaaggctacaacacatgtacaatagcaaatgccatttccacacac |
29007614 |
T |
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| Q |
218 |
aacactggagaaacagtgatccacctcactgaatcaggaacacgct |
263 |
Q |
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| T |
29007613 |
aacactggagaaacagtgatccacctcactgaatcaggaacacgct |
29007568 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 124; E-Value: 8e-64
Query Start/End: Original strand, 33 - 263
Target Start/End: Original strand, 21409421 - 21409651
Alignment:
| Q |
33 |
aaaataagaggtgggaacaatgtaaagtgtatttttcgagact-tgaattaaaatttgtaataacgaacggttcattggatatgtgatgattggcagtgt |
131 |
Q |
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| T |
21409421 |
aaaataagtggcaggaacaaagtaaagtgtatttttcgaatgtctaaattaaaattggtaataacaaatg-ttcattggatatgtgatgattgacagtgt |
21409519 |
T |
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| Q |
132 |
ttacttacacaccgttatacgacgtgatcgaggtaaaccaacaaggctacaacacatgtacaatagcaaatgccatttccacacacaacactggagaaac |
231 |
Q |
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| T |
21409520 |
ttacttacacaccgttgtacgacgtaattgaggtaaaccaacaagggtacaacacatgtacaatagcaaatgccatttcgacatacaactcaggagaaac |
21409619 |
T |
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| Q |
232 |
agtgatccacctcactgaatcaggaacacgct |
263 |
Q |
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| T |
21409620 |
agtgatccacgtcattgaatcaggaaaacgct |
21409651 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 33 - 249
Target Start/End: Original strand, 21461710 - 21461926
Alignment:
| Q |
33 |
aaaataagaggtgggaacaatgtaaagtgtatttttcgagact-tgaattaaaatttgtaataacgaacggttcattggatatgtgatgattggcagtgt |
131 |
Q |
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|||||||| || ||||||| ||||||||||||||| || | | |||||||||| |||||||| || | |||||||||||||||||||||| ||| || |
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| T |
21461710 |
aaaataagtggcaggaacaaagtaaagtgtattttttgaatgtataaattaaaattagtaataacaaatg-ttcattggatatgtgatgattgacagcgt |
21461808 |
T |
|
| Q |
132 |
ttacttacacaccgttatacgacgtgatcgaggtaaaccaacaaggctacaacacatgtacaatagcaaatgccatttccacacacaacactggagaaac |
231 |
Q |
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| T |
21461809 |
ttacttacacaccgttgtacaacgtaattgaggtaaaccaacaagggtacaacacatgtacaatagcaaacgccgtttcgacatacaactctggagaaat |
21461908 |
T |
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| Q |
232 |
agtgatccacctcactga |
249 |
Q |
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| T |
21461909 |
agtgatccacctcactga |
21461926 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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