View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20578_high_54 (Length: 268)
Name: NF20578_high_54
Description: NF20578
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20578_high_54 |
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| [»] scaffold0041 (2 HSPs) |
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Alignment Details
Target: scaffold0041 (Bit Score: 226; Significance: 1e-124; HSPs: 2)
Name: scaffold0041
Description:
Target: scaffold0041; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 18 - 255
Target Start/End: Original strand, 87240 - 87476
Alignment:
| Q |
18 |
cgaactaagcacttttccattcataaaatgcattttacatacttggaagtgatgtgcataattttaaaaatattttacaggaattgacaatgaaagaaaa |
117 |
Q |
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| T |
87240 |
cgaactaagcacttttccattcataaaatgcattttacatacttggaagtgatgtgcataattttaaaa-tattttacaggaattgacaatgaaagaaaa |
87338 |
T |
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| Q |
118 |
gagaaaaggttgcagtccaactgagatgaatatggagtcaaagaagaaatttaaaaatgtgaacaagagtgtggaccctcagctatggcatgccgttgca |
217 |
Q |
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| T |
87339 |
gagaaaaggttgcagtccaactgagatgaatatggagtcaaagaagaaattgaaaaatgtgaacaagagtgtggaccctcagctatggcatgccgttgca |
87438 |
T |
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| Q |
218 |
ggaggaatggttcaaatgccagaagttaactcacaggt |
255 |
Q |
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| T |
87439 |
ggaggaatggttcaaatgccagaagttaactcacaggt |
87476 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0041; HSP #2
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 65 - 255
Target Start/End: Original strand, 95311 - 95492
Alignment:
| Q |
65 |
agtgatgtgcataattttaaaaatattttacaggaattgacaatgaaagaaaagagaaaaggttgcagtc------caactgagatgaatatggagtcaa |
158 |
Q |
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| T |
95311 |
agtgatgtgcataatttttaaaa-atcttacatgaattaacaatgaaagaaaaaagaaaaggttgcaatctaggtgcaactgagatgaatatggagtcaa |
95409 |
T |
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| Q |
159 |
agaagaaatttaaaaatgtgaacaagagtgtggaccctcagctatggcatgccgttgcaggaggaatggttcaaatgccagaagttaactcacaggt |
255 |
Q |
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| T |
95410 |
aaaagaaattgaaaaatgtgaacaagagtg--------------tggcatgccattgcaggaggaatggtgcaaatgccagaagttaactcacaggt |
95492 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 226; Significance: 1e-124; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 18 - 255
Target Start/End: Complemental strand, 40879043 - 40878807
Alignment:
| Q |
18 |
cgaactaagcacttttccattcataaaatgcattttacatacttggaagtgatgtgcataattttaaaaatattttacaggaattgacaatgaaagaaaa |
117 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
40879043 |
cgaactaagcacttttccattcataaaatgcattttacatacttggaagtgatgtgcataattttaaaa-tattttacaggaattgacaatgaaagaaaa |
40878945 |
T |
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| Q |
118 |
gagaaaaggttgcagtccaactgagatgaatatggagtcaaagaagaaatttaaaaatgtgaacaagagtgtggaccctcagctatggcatgccgttgca |
217 |
Q |
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| T |
40878944 |
gagaaaaggttgcagtccaactgagatgaatatggagtcaaagaagaaattgaaaaatgtgaacaagagtgtggaccctcagctatggcatgccgttgca |
40878845 |
T |
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| Q |
218 |
ggaggaatggttcaaatgccagaagttaactcacaggt |
255 |
Q |
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| T |
40878844 |
ggaggaatggttcaaatgccagaagttaactcacaggt |
40878807 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 65 - 255
Target Start/End: Complemental strand, 40870971 - 40870790
Alignment:
| Q |
65 |
agtgatgtgcataattttaaaaatattttacaggaattgacaatgaaagaaaagagaaaaggttgcagtc------caactgagatgaatatggagtcaa |
158 |
Q |
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| T |
40870971 |
agtgatgtgcataatttttaaaa-atcttacatgaattaacaatgaaagaaaaaagaaaaggttgcaatctaggtgcaactgagatgaatatggagtcaa |
40870873 |
T |
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| Q |
159 |
agaagaaatttaaaaatgtgaacaagagtgtggaccctcagctatggcatgccgttgcaggaggaatggttcaaatgccagaagttaactcacaggt |
255 |
Q |
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| T |
40870872 |
aaaagaaattgaaaaatgtgaacaagagtg--------------tggcatgccattgcaggaggaatggtgcaaatgccagaagttaactcacaggt |
40870790 |
T |
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