View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20578_high_59 (Length: 256)

Name: NF20578_high_59
Description: NF20578
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20578_high_59
NF20578_high_59
[»] chr6 (7 HSPs)
chr6 (8-256)||(6679412-6679660)
chr6 (8-256)||(6774626-6774874)
chr6 (9-63)||(6780044-6780098)
chr6 (132-220)||(6668545-6668633)
chr6 (9-63)||(6668417-6668471)
chr6 (132-205)||(6779897-6779970)
chr6 (182-223)||(9866416-9866457)
[»] chr5 (7 HSPs)
chr5 (99-253)||(36848060-36848213)
chr5 (114-256)||(6162440-6162579)
chr5 (8-80)||(36848275-36848347)
chr5 (8-80)||(6162666-6162738)
chr5 (99-176)||(36859535-36859614)
chr5 (15-69)||(36859694-36859748)
chr5 (8-63)||(6163424-6163479)
[»] chr3 (4 HSPs)
chr3 (113-253)||(46521961-46522098)
chr3 (135-253)||(49881548-49881663)
chr3 (8-80)||(46521796-46521868)
chr3 (8-78)||(49881399-49881469)
[»] chr1 (2 HSPs)
chr1 (113-253)||(18135526-18135663)
chr1 (8-67)||(18135371-18135430)
[»] scaffold0299 (1 HSPs)
scaffold0299 (192-239)||(13409-13453)


Alignment Details
Target: chr6 (Bit Score: 237; Significance: 1e-131; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 8 - 256
Target Start/End: Original strand, 6679412 - 6679660
Alignment:
Q  8 tggacatcatcccagaggagaattaccctactgaattctcttatagatcaagagtatgttcagtggtttatcaccaattctttcttctgaactaatatgt 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  6679412 tggacatcatcccagaggagaattaccctactgaattctcttatagatcaagagtatgttcagtggtttatcaccaattttttcttctgaactaatatgt 6679511  T
Q  108 ctcaggatttaatagaagttcccttggtttcaggttatacttctgtttcaagagattgaaggagtagatgtatgcatttttggaatgtatgtccaggaat 207  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  6679512 ctcaggatttaatagaagttcccttggtttcaggttatacttctgtttcaatagattgaaggagtagatgtatgcatttttggaatgtatgtccaggaat 6679611  T
Q  208 ttggctctgaatgcggcggcaatcccaatcagcattgtgtatacatatc 256  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||    
T  6679612 ttggctctgaatgcggcggcaatcccaatcagcgttgtgtatacatatc 6679660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 8 - 256
Target Start/End: Complemental strand, 6774874 - 6774626
Alignment:
Q  8 tggacatcatcccagaggagaattaccctactgaattctcttatagatcaagagtatgttcagtggtttatcaccaattctttcttctgaactaatatgt 107  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6774874 tggacatcatcccagaggaaaattaccctactgaattctcttatagatcaagagtatgttcagtggtttatcaccaattctttcttctgaactaatatgt 6774775  T
Q  108 ctcaggatttaatagaagttcccttggtttcaggttatacttctgtttcaagagattgaaggagtagatgtatgcatttttggaatgtatgtccaggaat 207  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  6774774 ctcaggatttaatagaagttcccttggtttcaggttatacttctgtttcaaaagattgaaggagtagatgtatgcatttttggaatgtatgtccaggaat 6774675  T
Q  208 ttggctctgaatgcggcggcaatcccaatcagcattgtgtatacatatc 256  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||    
T  6774674 ttggctctgaatgcggcggcaatcccaatcagcgttgtgtatacatatc 6774626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 9 - 63
Target Start/End: Complemental strand, 6780098 - 6780044
Alignment:
Q  9 ggacatcatcccagaggagaattaccctactgaattctcttatagatcaagagta 63  Q
    ||||||||| |||||||||||||||||| ||||||||||||||||||||||||||    
T  6780098 ggacatcattccagaggagaattaccctgctgaattctcttatagatcaagagta 6780044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 132 - 220
Target Start/End: Original strand, 6668545 - 6668633
Alignment:
Q  132 tggtttcaggttatacttctgtttcaagagattgaaggagtagatgtatgcatttttggaatgtatgtccaggaatttggctctgaatg 220  Q
    |||||| ||||||| ||||| |||||  |||||||||||| |||||||||||| |||| ||||||||||||||| | |||||| |||||    
T  6668545 tggttttaggttattcttctatttcagaagattgaaggagcagatgtatgcatatttgcaatgtatgtccaggagtatggctcggaatg 6668633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 9 - 63
Target Start/End: Original strand, 6668417 - 6668471
Alignment:
Q  9 ggacatcatcccagaggagaattaccctactgaattctcttatagatcaagagta 63  Q
    ||||||||  |||||||||||||||||| ||||||||||||||||||||||||||    
T  6668417 ggacatcactccagaggagaattaccctgctgaattctcttatagatcaagagta 6668471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 132 - 205
Target Start/End: Complemental strand, 6779970 - 6779897
Alignment:
Q  132 tggtttcaggttatacttctgtttcaagagattgaaggagtagatgtatgcatttttggaatgtatgtccagga 205  Q
    |||||| ||||||| ||||| |||||  ||||||||||||  ||||||||||| |||| |||||||||||||||    
T  6779970 tggttttaggttattcttctatttcagaagattgaaggagcggatgtatgcatatttgcaatgtatgtccagga 6779897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 182 - 223
Target Start/End: Original strand, 9866416 - 9866457
Alignment:
Q  182 catttttggaatgtatgtccaggaatttggctctgaatgcgg 223  Q
    |||||||||||||||||| ||||| |||||||| ||||||||    
T  9866416 catttttggaatgtatgttcaggagtttggctccgaatgcgg 9866457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 108; Significance: 2e-54; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 99 - 253
Target Start/End: Complemental strand, 36848213 - 36848060
Alignment:
Q  99 ctaatatgtctcag--gatttaatagaagttcccttggtttcaggttatacttctgtttcaagagattgaaggagtagatgtatgcatttttggaatgta 196  Q
    ||||||||||||||  ||||||||| |||||||||||||||||||||||||||||||||||  | |||||||||| ||||||||||||||||||||||||    
T  36848213 ctaatatgtctcagaggatttaataaaagttcccttggtttcaggttatacttctgtttcagaaaattgaaggagcagatgtatgcatttttggaatgta 36848114  T
Q  197 tgtccaggaatttggctctgaatgcggcggcaatcccaatcagcattgtgtatacat 253  Q
    |||||||||||||||||||||||   || ||||||||||||||||||||||||||||    
T  36848113 tgtccaggaatttggctctgaat---gcagcaatcccaatcagcattgtgtatacat 36848060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 114 - 256
Target Start/End: Complemental strand, 6162579 - 6162440
Alignment:
Q  114 atttaatagaagttcccttggtttcaggttatacttctgtttcaagagattgaaggagtagatgtatgcatttttggaatgtatgtccaggaatttggct 213  Q
    ||||||||||||||| || ||||||||||||| |||||||||||  |||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  6162579 atttaatagaagttctctcggtttcaggttattcttctgtttcagcagattgaaggagcagatgtatgcatttttggaatgtatgtccaggaatttggct 6162480  T
Q  214 ctgaatgcggcggcaatcccaatcagcattgtgtatacatatc 256  Q
    |||||||   ||||||||||||||| | |||| ||| ||||||    
T  6162479 ctgaatg---cggcaatcccaatcaacgttgtctatgcatatc 6162440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 8 - 80
Target Start/End: Complemental strand, 36848347 - 36848275
Alignment:
Q  8 tggacatcatcccagaggagaattaccctactgaattctcttatagatcaagagtatgttcagtggtttatca 80  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| || || ||||||||||    
T  36848347 tggacatcatcccagaggagaattaccctactgaattctcttatagatcaagagtaagtccaatggtttatca 36848275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 8 - 80
Target Start/End: Complemental strand, 6162738 - 6162666
Alignment:
Q  8 tggacatcatcccagaggagaattaccctactgaattctcttatagatcaagagtatgttcagtggtttatca 80  Q
    |||||||||||||| | |||||||||||| |||||||||||||||||||||||||| ||||||||||||||||    
T  6162738 tggacatcatcccataagagaattaccctgctgaattctcttatagatcaagagtaagttcagtggtttatca 6162666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 99 - 176
Target Start/End: Complemental strand, 36859614 - 36859535
Alignment:
Q  99 ctaatatgtctc--aggatttaatagaagttcccttggtttcaggttatacttctgtttcaagagattgaaggagtagat 176  Q
    ||||||||||||  ||||||||||||||||||||||||||||| |||||||||||||||||  |  ||||||||||||||    
T  36859614 ctaatatgtctcggaggatttaatagaagttcccttggtttcatgttatacttctgtttcagaaatttgaaggagtagat 36859535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 15 - 69
Target Start/End: Complemental strand, 36859748 - 36859694
Alignment:
Q  15 catcccagaggagaattaccctactgaattctcttatagatcaagagtatgttca 69  Q
    |||||| ||||||||||||||||||||||| |||||||||||||||||| |||||    
T  36859748 catcccggaggagaattaccctactgaattatcttatagatcaagagtaagttca 36859694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 8 - 63
Target Start/End: Complemental strand, 6163479 - 6163424
Alignment:
Q  8 tggacatcatcccagaggagaattaccctactgaattctcttatagatcaagagta 63  Q
    ||||||| || ||||| |||||||||||| ||||||||||||||||||||||||||    
T  6163479 tggacattattccagatgagaattaccctgctgaattctcttatagatcaagagta 6163424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 83; Significance: 2e-39; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 113 - 253
Target Start/End: Original strand, 46521961 - 46522098
Alignment:
Q  113 gatttaatagaagttcccttggtttcaggttatacttctgtttcaagagattgaaggagtagatgtatgcatttttggaatgtatgtccaggaatttggc 212  Q
    |||||||||||||||  |||||||||||||||| |||||||||||  |||||||||||| |||| |||||||||||||||||||||||||||| ||||||    
T  46521961 gatttaatagaagtttgcttggtttcaggttattcttctgtttcagcagattgaaggagcagatatatgcatttttggaatgtatgtccaggagtttggc 46522060  T
Q  213 tctgaatgcggcggcaatcccaatcagcattgtgtatacat 253  Q
    |||||||   |||| ||||| ||||||| ||||||||||||    
T  46522061 tctgaat---gcggaaatccgaatcagcgttgtgtatacat 46522098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 135 - 253
Target Start/End: Original strand, 49881548 - 49881663
Alignment:
Q  135 tttcaggttatacttctgtttcaagagattgaaggagtagatgtatgcatttttggaatgtatgtccaggaatttggctctgaatgcggcggcaatccca 234  Q
    ||||||||||| |||||||||||  ||||||||||||||||| ||||||||||||||||||| | |||||| || ||||| ||||   |||||||||| |    
T  49881548 tttcaggttattcttctgtttcagcagattgaaggagtagatatatgcatttttggaatgtacgcccaggagttcggctccgaat---gcggcaatccaa 49881644  T
Q  235 atcagcattgtgtatacat 253  Q
    |||||| ||||||| ||||    
T  49881645 atcagcgttgtgtacacat 49881663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 8 - 80
Target Start/End: Original strand, 46521796 - 46521868
Alignment:
Q  8 tggacatcatcccagaggagaattaccctactgaattctcttatagatcaagagtatgttcagtggtttatca 80  Q
    |||| ||||| |||||||||||||||||| |||||||||||||||||||||||||| ||||||||| ||||||    
T  46521796 tggatatcattccagaggagaattaccctgctgaattctcttatagatcaagagtaagttcagtggattatca 46521868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 8 - 78
Target Start/End: Original strand, 49881399 - 49881469
Alignment:
Q  8 tggacatcatcccagaggagaattaccctactgaattctcttatagatcaagagtatgttcagtggtttat 78  Q
    |||||||||| |||||||| ||||||||| | |||||||||||||||||||||||| ||||||||||||||    
T  49881399 tggacatcattccagaggaaaattaccctgccgaattctcttatagatcaagagtaagttcagtggtttat 49881469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 83; Significance: 2e-39; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 113 - 253
Target Start/End: Original strand, 18135526 - 18135663
Alignment:
Q  113 gatttaatagaagttcccttggtttcaggttatacttctgtttcaagagattgaaggagtagatgtatgcatttttggaatgtatgtccaggaatttggc 212  Q
    ||||||||| ||||||||||||||||||||||| |||||||||||  | |||||||||| |||| ||||||||||||||||||| |||||||||||||||    
T  18135526 gatttaatataagttcccttggtttcaggttattcttctgtttcagcatattgaaggagcagatatatgcatttttggaatgtacgtccaggaatttggc 18135625  T
Q  213 tctgaatgcggcggcaatcccaatcagcattgtgtatacat 253  Q
    |||||||   ||||||| |||||||||| |||||| |||||    
T  18135626 tctgaat---gcggcaaccccaatcagcgttgtgtctacat 18135663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 8 - 67
Target Start/End: Original strand, 18135371 - 18135430
Alignment:
Q  8 tggacatcatcccagaggagaattaccctactgaattctcttatagatcaagagtatgtt 67  Q
    |||||||||||||  |||||||||||||| ||||||||||||||||| ||||||||||||    
T  18135371 tggacatcatccctcaggagaattaccctgctgaattctcttatagagcaagagtatgtt 18135430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0299 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: scaffold0299
Description:

Target: scaffold0299; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 192 - 239
Target Start/End: Original strand, 13409 - 13453
Alignment:
Q  192 atgtatgtccaggaatttggctctgaatgcggcggcaatcccaatcag 239  Q
    |||||||||||||||||||||||| |||   |||||||||||||||||    
T  13409 atgtatgtccaggaatttggctcttaat---gcggcaatcccaatcag 13453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University