View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20578_high_66 (Length: 249)
Name: NF20578_high_66
Description: NF20578
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20578_high_66 |
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Alignment Details
Target: chr5 (Bit Score: 204; Significance: 1e-111; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 16 - 231
Target Start/End: Original strand, 33119954 - 33120169
Alignment:
| Q |
16 |
ataggatggttggcaatagttggtttagcagtctacataatattcttttcaccaggaatgggaactgttccatgggttatcaactctgaaatataccctt |
115 |
Q |
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| T |
33119954 |
ataggatggttggcgatagttggtttagcagtctacataatattcttttcaccaggaatgggaacggttccatgggttatcaactctgaaatacaccctt |
33120053 |
T |
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| Q |
116 |
taaggtatagaggaatatgtggaggaatagcatcaacaacagtgtgggtctctaacctcattgtttctcaatcctttttatctgtcatagaacttcttgg |
215 |
Q |
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| T |
33120054 |
taaggtatagaggaatatgtggaggaatagcatcaacaacagtgtgggtctctaacctcattgtttctcaatcctttttatctgtcatagaacttcttgg |
33120153 |
T |
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| Q |
216 |
gactgcatggacattc |
231 |
Q |
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|||||||||||||||| |
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| T |
33120154 |
gactgcatggacattc |
33120169 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 58 - 198
Target Start/End: Original strand, 33116784 - 33116924
Alignment:
| Q |
58 |
ttcttttcaccaggaatgggaactgttccatgggttatcaactctgaaatataccctttaaggtatagaggaatatgtggaggaatagcatcaacaacag |
157 |
Q |
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| T |
33116784 |
ttcttttcacctggaatggggactgttccatgggtcataaactctgagatttaccctttaaggtatagaggagtctgtggaggaatggcttcaacaagtg |
33116883 |
T |
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| Q |
158 |
tgtgggtctctaacctcattgtttctcaatcctttttatct |
198 |
Q |
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| T |
33116884 |
tttggatctcaaaccttattgtttctcaatcctttttatct |
33116924 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 82; Significance: 8e-39; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 47 - 188
Target Start/End: Complemental strand, 21492025 - 21491884
Alignment:
| Q |
47 |
tctacataatattcttttcaccaggaatgggaactgttccatgggttatcaactctgaaatataccctttaaggtatagaggaatatgtggaggaatagc |
146 |
Q |
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| T |
21492025 |
tctacatcatattcttctcgcctggaatgggaacagttccatgggttgttaactctgaaatctatccattgaggtatagaggaatatgtggaggaatagc |
21491926 |
T |
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| Q |
147 |
atcaacaacagtgtgggtctctaacctcattgtttctcaatc |
188 |
Q |
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| T |
21491925 |
atcaacaacagtgtgggtttccaaccttgttgtttctcaatc |
21491884 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 56 - 153
Target Start/End: Complemental strand, 21558576 - 21558479
Alignment:
| Q |
56 |
tattcttttcaccaggaatgggaactgttccatgggttatcaactctgaaatataccctttaaggtatagaggaatatgtggaggaatagcatcaaca |
153 |
Q |
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| T |
21558576 |
tattcttctcaccaggaatgggaacagttccatgggttgtaaactctgaaatatatccattaagatacagaggaatatgtggaggaatcgcgtcaaca |
21558479 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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