View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20578_high_68 (Length: 247)
Name: NF20578_high_68
Description: NF20578
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20578_high_68 |
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Alignment Details
Target: chr4 (Bit Score: 183; Significance: 4e-99; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 1 - 243
Target Start/End: Complemental strand, 53838745 - 53838505
Alignment:
| Q |
1 |
aatcaaatttcttgacactgcaactaacaagtggaggaagcatacaaagatgcactgaagtgtgaaaatggttatcaaacaattattttttgcaattagt |
100 |
Q |
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| T |
53838745 |
aatcaaatttcttg-cactgcaactaccaagtggaggaagcatacaaagatgcactgaagtgtgaaaatggttatcaaacaattattttttgcaattagt |
53838647 |
T |
|
| Q |
101 |
actannnnnnnncttctggctatgtacataatgtgaaaaagttattgtctcttagacccagaagtctataaccaaagttaaagcttaataattaagaaga |
200 |
Q |
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|||| |||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
53838646 |
actatttttttt-ttctggctatgtacataatgtgaaaaagttattgccttttagacccagaagtctataaccaaagttaaagcttaataaataagaaga |
53838548 |
T |
|
| Q |
201 |
tacaatgcaggacaaagagtgattaccaatccaactcattcat |
243 |
Q |
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||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
53838547 |
tacaatgcatgacaaagagtgattaccaatccaactcattcat |
53838505 |
T |
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