View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20578_high_71 (Length: 243)
Name: NF20578_high_71
Description: NF20578
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20578_high_71 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 218; Significance: 1e-120; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 1 - 226
Target Start/End: Original strand, 53838826 - 53839051
Alignment:
| Q |
1 |
tgttgtattattagacaaattaaaactgcttctctgatttacatatgtcaatgtatgaaccaatcctatattgggcacgttggcaacatagaattttgtc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
53838826 |
tgttgtattattagacaaattaaaactgcttccctgatttacatatgtcaatgtatgaaccaatcctatactgggcacgttggcaacatagaattttgtc |
53838925 |
T |
|
| Q |
101 |
atatgttgcattgatatatggactgtacctttacaattgattgattgattgtgtttgaaattaagtgatataatcacgattttctcatgtttgattgtgt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
53838926 |
atatgttgcattgatatatggactgtacctttacaattgattgattgattgtgtttgaaattaagtgatataatcacgattttctcatgtttgattgtgt |
53839025 |
T |
|
| Q |
201 |
ttgaaattaagcctaaacataccttg |
226 |
Q |
| |
|
|||||||||||||||||||||||||| |
|
|
| T |
53839026 |
ttgaaattaagcctaaacataccttg |
53839051 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University